Gcaud2590.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2590.t1
Unique NameGcaud2590.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length82
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_53_length_63756_cov_4.464180contigNODE_53_length_63756_cov_4.464180:21610..22086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2590Gcaud2590Gracilaria caudata M_176_S67 malegeneNODE_53_length_63756_cov_4.464180 21610..22086 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2590.t1Gcaud2590.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_53_length_63756_cov_4.464180 21610..22086 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2590.t1.start1Gcaud2590.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_53_length_63756_cov_4.464180 21610..21612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2590.t1.CDS1Gcaud2590.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_53_length_63756_cov_4.464180 21610..21623 +
Gcaud2590.t1.CDS2Gcaud2590.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_53_length_63756_cov_4.464180 21855..22086 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2590.t1.exon1Gcaud2590.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_53_length_63756_cov_4.464180 21610..21623 +
Gcaud2590.t1.exon2Gcaud2590.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_53_length_63756_cov_4.464180 21855..22086 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2590.t1.intron1Gcaud2590.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_53_length_63756_cov_4.464180 21624..21854 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2590.t1.stop1Gcaud2590.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_53_length_63756_cov_4.464180 22084..22086 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2590.t1 ID=Gcaud2590.t1|Name=Gcaud2590.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=82bp
MYEQRRFCGQFQLRTTQAGLNSNAYKAGRSGHLVTKGQQYIFLSSSMGIS
VNLQKIALESCSYTMNITLFICETQKSQLIR*
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spliced messenger RNA

>Gcaud2590.t1 ID=Gcaud2590.t1|Name=Gcaud2590.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=246bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:21610..22086+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGAACAAAGGAGATTTTGCGGACAATTTCAACTCCGAACAACGCA
AGCAGGTTTAAACTCGAACGCCTATAAAGCCGGACGCTCTGGACATTTAG
TAACAAAAGGTCAGCAATATATATTCCTCTCGTCAAGTATGGGAATCTCC
GTCAATCTCCAGAAAATTGCACTTGAATCTTGCTCCTACACAATGAACAT
TACTCTCTTTATATGTGAAACGCAGAAAAGTCAACTTATTCGATAG
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protein sequence of Gcaud2590.t1

>Gcaud2590.t1 ID=Gcaud2590.t1|Name=Gcaud2590.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=82bp
MYEQRRFCGQFQLRTTQAGLNSNAYKAGRSGHLVTKGQQYIFLSSSMGIS
VNLQKIALESCSYTMNITLFICETQKSQLIR*
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mRNA from alignment at NODE_53_length_63756_cov_4.464180:21610..22086+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2590.t1 ID=Gcaud2590.t1|Name=Gcaud2590.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=477bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:21610..22086+ (Gracilaria caudata M_176_S67 male)
ATGTACGAACAAAGGTGCGATACTGTACTAACATTATTATGCTCAGCTTC
AAACTGTCGAAAGTCATGTGGAGATCCAATAATGACCATCCAGACAAACC
ACCCAGTGGTACTAATTCGACTCTTTTCACTGCCTTGGGGCTCACCTTTC
TTTCGGCTGCCCTAATCAGCCGCGTCAAATACTGGGGTATAAATGCATAC
TGAAAAGTTTTACAACTAACAACACAAAACATCATGCTTGACTAGGAGAT
TTTGCGGACAATTTCAACTCCGAACAACGCAAGCAGGTTTAAACTCGAAC
GCCTATAAAGCCGGACGCTCTGGACATTTAGTAACAAAAGGTCAGCAATA
TATATTCCTCTCGTCAAGTATGGGAATCTCCGTCAATCTCCAGAAAATTG
CACTTGAATCTTGCTCCTACACAATGAACATTACTCTCTTTATATGTGAA
ACGCAGAAAAGTCAACTTATTCGATAG
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Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:21610..22086+

>Gcaud2590.t1 ID=Gcaud2590.t1|Name=Gcaud2590.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=246bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:21610..22086+ (Gracilaria caudata M_176_S67 male)
ATGTACGAACAAAGGAGATTTTGCGGACAATTTCAACTCCGAACAACGCA
AGCAGGTTTAAACTCGAACGCCTATAAAGCCGGACGCTCTGGACATTTAG
TAACAAAAGGTCAGCAATATATATTCCTCTCGTCAAGTATGGGAATCTCC
GTCAATCTCCAGAAAATTGCACTTGAATCTTGCTCCTACACAATGAACAT
TACTCTCTTTATATGTGAAACGCAGAAAAGTCAACTTATTCGATAG
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