Gcaud2589.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2589.t1
Unique Name	Gcaud2589.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	565

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_53_length_63756_cov_4.464180	contig	NODE_53_length_63756_cov_4.464180:17764..19746 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704425.1
Preferred name	DET1
PFAMs	Det1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10571
KEGG Pathway	ko04120,map04120
GOs	GO:0000003,GO:0000122,GO:0000151,GO:0003006,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005700,GO:0006139,GO:0006259,GO:0006281,GO:0006355,GO:0006357,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007276,GO:0007281,GO:0007292,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016567,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030162,GO:0030674,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031461,GO:0031464,GO:0031625,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0036211,GO:0042176,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0044703,GO:0044877,GO:0045732,GO:0045862,GO:0045892,GO:0045934,GO:0046483,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051704,GO:0051716,GO:0060090,GO:0060255,GO:0061136,GO:0065003,GO:0065007,GO:0070647,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090304,GO:1901360,GO:1901564,GO:1901800,GO:1902494,GO:1902679,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903507,GO:1990234,GO:1990756,GO:2000058,GO:2000060,GO:2000112,GO:2000113,GO:2001141
Evalue	1.5e-25
EggNOG OGs	KOG2558@1\|root,KOG2558@2759\|Eukaryota
Description	protein binding, bridging involved in substrate recognition for ubiquitination
COG category	S
BRITE	ko00000,ko00001,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2589	Gcaud2589	Gracilaria caudata M_176_S67 male	gene	NODE_53_length_63756_cov_4.464180 17764..19746 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2589.t1	Gcaud2589.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_53_length_63756_cov_4.464180 17764..19746 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2589.t1.stop1	Gcaud2589.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_53_length_63756_cov_4.464180 17764..17766 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2589.t1.CDS1	Gcaud2589.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_53_length_63756_cov_4.464180 17764..18322 -
Gcaud2589.t1.CDS2	Gcaud2589.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_53_length_63756_cov_4.464180 18399..18428 -
Gcaud2589.t1.CDS3	Gcaud2589.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_53_length_63756_cov_4.464180 18533..19504 -
Gcaud2589.t1.CDS4	Gcaud2589.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_53_length_63756_cov_4.464180 19613..19746 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2589.t1.exon1	Gcaud2589.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_53_length_63756_cov_4.464180 17764..18322 -
Gcaud2589.t1.exon2	Gcaud2589.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_53_length_63756_cov_4.464180 18399..18428 -
Gcaud2589.t1.exon3	Gcaud2589.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_53_length_63756_cov_4.464180 18533..19504 -
Gcaud2589.t1.exon4	Gcaud2589.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_53_length_63756_cov_4.464180 19613..19746 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2589.t1.intron1	Gcaud2589.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_53_length_63756_cov_4.464180 18323..18398 -
Gcaud2589.t1.intron2	Gcaud2589.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_53_length_63756_cov_4.464180 18429..18532 -
Gcaud2589.t1.intron3	Gcaud2589.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_53_length_63756_cov_4.464180 19505..19612 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2589.t1.start1	Gcaud2589.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_53_length_63756_cov_4.464180 19744..19746 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_53_length_63756_cov_4.464180:17764..19746-
coding sequence from alignment at NODE_53_length_63756_cov_4.464180:17764..19746-

mRNA sequence

>Gcaud2589.t1 ID=Gcaud2589.t1|Name=Gcaud2589.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=565bp
MRRRRGRRGMLHALRRRETGSLSGNSFRRATYSALVPSSTFIHVQKTQSI
SSTRASHVRIYDTSAFPPPSSLHPDFQLSSQPNQPSLLLSVPVPIAASAA
QQPQSPSHVHNHPSYTCQFAQFFTHMYTMSIVNGTAHIARDFSISTSSGR
YLILASYQPQNQPHHPPTQQDHLPAISSLPSMTVTFYLVEVRTGVIADRF
ILLDDYVRFASHEGVHFYGDMLCILSMRHQVLHIVKIQEALGKFTEERCI
GAMCDRDDHQVIARAREAQNAYVAHREEGSHSNSDKPAASYQPHGNENDH
NAQDAADVVEEGDDEAEQNEPKETGLGNGMLKNAFYIGLMQRLLVYVYRR
MHSEGNASLFYRVIGQYSFERHLFLRCVLDAFVGDEMEAASLPPSRNSVL
DEGQRREEENDQGNTTRRDGIGERADWWSSVASRRGTSERVRRTRLELSR
IPMSRQVRMVSPYLDRSLFSYNSERSYVLTARRFAPAKDLGSVKFMSAET
GELRFKLATEFSLLDGEVGGERYATDMEDGGLRRRMFLFHPLLPFVMAME
GHRPVNFHVYGHAA*

spliced messenger RNA

>Gcaud2589.t1 ID=Gcaud2589.t1|Name=Gcaud2589.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:17764..19746- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACGACGTCGTGGTCGTCGTGGCATGCTTCACGCGCTGCGTCGACG
TGAAACTGGCAGCTTGTCGGGCAACTCGTTTCGACGTGCCACCTACTCCG
CGCTCGTTCCCTCCTCCACTTTTATTCATGTGCAAAAGACCCAGTCCATA
TCGTCTACTCGCGCTTCCCACGTTCGTATATATGATACTTCTGCTTTCCC
GCCGCCTTCCTCACTTCATCCCGACTTTCAGCTTTCTTCACAACCGAATC
AGCCTTCCCTCTTGTTATCAGTACCTGTTCCAATTGCCGCTTCCGCTGCG
CAACAACCGCAGTCGCCTTCTCATGTACATAATCATCCGTCCTACACATG
CCAGTTTGCACAGTTTTTCACCCATATGTATACAATGTCCATAGTCAATG
GCACCGCTCACATTGCGAGGGACTTCTCTATAAGCACGTCGAGTGGAAGA
TACTTGATTCTCGCCTCATATCAACCTCAAAACCAACCTCATCATCCACC
CACTCAACAAGATCATCTACCGGCTATTTCATCGCTTCCTTCCATGACCG
TTACTTTTTATCTGGTCGAAGTTCGTACCGGGGTCATTGCCGACCGTTTC
ATTCTCTTGGACGATTATGTCAGGTTCGCTTCCCACGAAGGGGTCCATTT
CTACGGTGATATGCTTTGCATTCTTTCCATGAGGCACCAAGTCCTACATA
TTGTCAAGATACAAGAGGCTTTAGGAAAGTTTACCGAAGAGCGATGTATT
GGTGCCATGTGCGATAGAGATGATCATCAAGTTATTGCTCGCGCCCGAGA
GGCGCAAAATGCTTACGTTGCCCACCGGGAGGAGGGGAGTCATTCAAATT
CCGACAAACCAGCTGCATCATACCAACCGCATGGTAATGAAAACGATCAT
AACGCCCAAGATGCTGCTGATGTAGTGGAGGAGGGCGATGATGAAGCCGA
ACAAAATGAGCCAAAGGAAACTGGCTTGGGCAACGGAATGCTAAAGAACG
CGTTTTATATCGGACTTATGCAGAGATTGTTGGTGTATGTTTATAGACGG
ATGCATTCTGAGGGCAATGCATCCTTGTTTTATCGTGTCATCGGGCAATA
TAGCTTCGAGAGACACTTGTTTCTTCGTTGTGTATTAGATGCGTTTGTGG
GTGACGAAATGGAAGCGGCATCTTTACCACCATCGAGAAATAGTGTGCTG
GATGAAGGGCAACGCAGAGAGGAGGAAAATGATCAGGGAAACACTACACG
TAGGGATGGTATCGGCGAACGAGCGGACTGGTGGTCAAGCGTTGCAAGTC
GACGAGGCACTTCTGAACGAGTCAGAAGGACCCGGTTGGAGTTGTCGCGC
ATTCCTATGTCGAGACAAGTGCGGATGGTGTCCCCGTACTTGGACCGCTC
GTTGTTCTCGTATAATTCTGAAAGAAGCTATGTGCTGACCGCTAGAAGAT
TCGCACCCGCAAAGGATTTGGGCAGCGTCAAGTTCATGAGCGCGGAAACT
GGAGAGTTGAGATTCAAGTTGGCGACGGAGTTTAGCTTGTTGGATGGTGA
AGTGGGGGGAGAGAGGTATGCGACGGACATGGAGGACGGTGGTCTACGGC
GAAGAATGTTTCTCTTTCACCCGCTTTTGCCGTTTGTCATGGCGATGGAG
GGGCATCGTCCGGTTAACTTTCATGTCTATGGACATGCTGCATGA

protein sequence of Gcaud2589.t1

>Gcaud2589.t1 ID=Gcaud2589.t1|Name=Gcaud2589.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=565bp
MRRRRGRRGMLHALRRRETGSLSGNSFRRATYSALVPSSTFIHVQKTQSI
SSTRASHVRIYDTSAFPPPSSLHPDFQLSSQPNQPSLLLSVPVPIAASAA
QQPQSPSHVHNHPSYTCQFAQFFTHMYTMSIVNGTAHIARDFSISTSSGR
YLILASYQPQNQPHHPPTQQDHLPAISSLPSMTVTFYLVEVRTGVIADRF
ILLDDYVRFASHEGVHFYGDMLCILSMRHQVLHIVKIQEALGKFTEERCI
GAMCDRDDHQVIARAREAQNAYVAHREEGSHSNSDKPAASYQPHGNENDH
NAQDAADVVEEGDDEAEQNEPKETGLGNGMLKNAFYIGLMQRLLVYVYRR
MHSEGNASLFYRVIGQYSFERHLFLRCVLDAFVGDEMEAASLPPSRNSVL
DEGQRREEENDQGNTTRRDGIGERADWWSSVASRRGTSERVRRTRLELSR
IPMSRQVRMVSPYLDRSLFSYNSERSYVLTARRFAPAKDLGSVKFMSAET
GELRFKLATEFSLLDGEVGGERYATDMEDGGLRRRMFLFHPLLPFVMAME
GHRPVNFHVYGHAA*

mRNA from alignment at NODE_53_length_63756_cov_4.464180:17764..19746-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2589.t1 ID=Gcaud2589.t1|Name=Gcaud2589.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1983bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:17764..19746- (Gracilaria caudata M_176_S67 male)
ATGAGACGACGTCGTGGTCGTCGTGGCATGCTTCACGCGCTGCGTCGACG
TGAAACTGGCAGCTTGTCGGGCAACTCGTTTCGACGTGCCACCTACTCCG
CGCTCGTTCCCTCCTCCACTTTTATTCATGTGCAGTCCGTTCCCAACCTC
TACTTTCGCCGCTTCACGGCGTGTGGGCAGTATCTCATAGCGCTCGACGC
TAATAACCGTCTCATCGTTTTCCGATTTGAAACCGGTGGCAGAAAGACCC
AGTCCATATCGTCTACTCGCGCTTCCCACGTTCGTATATATGATACTTCT
GCTTTCCCGCCGCCTTCCTCACTTCATCCCGACTTTCAGCTTTCTTCACA
ACCGAATCAGCCTTCCCTCTTGTTATCAGTACCTGTTCCAATTGCCGCTT
CCGCTGCGCAACAACCGCAGTCGCCTTCTCATGTACATAATCATCCGTCC
TACACATGCCAGTTTGCACAGTTTTTCACCCATATGTATACAATGTCCAT
AGTCAATGGCACCGCTCACATTGCGAGGGACTTCTCTATAAGCACGTCGA
GTGGAAGATACTTGATTCTCGCCTCATATCAACCTCAAAACCAACCTCAT
CATCCACCCACTCAACAAGATCATCTACCGGCTATTTCATCGCTTCCTTC
CATGACCGTTACTTTTTATCTGGTCGAAGTTCGTACCGGGGTCATTGCCG
ACCGTTTCATTCTCTTGGACGATTATGTCAGGTTCGCTTCCCACGAAGGG
GTCCATTTCTACGGTGATATGCTTTGCATTCTTTCCATGAGGCACCAAGT
CCTACATATTGTCAAGATACAAGAGGCTTTAGGAAAGTTTACCGAAGAGC
GATGTATTGGTGCCATGTGCGATAGAGATGATCATCAAGTTATTGCTCGC
GCCCGAGAGGCGCAAAATGCTTACGTTGCCCACCGGGAGGAGGGGAGTCA
TTCAAATTCCGACAAACCAGCTGCATCATACCAACCGCATGGTAATGAAA
ACGATCATAACGCCCAAGATGCTGCTGATGTAGTGGAGGAGGGCGATGAT
GAAGCCGAACAAAATGAGCCAAAGGAAACTGGCTTGGGCAACGGAATGCT
AAAGAACGCGTTTTATATCGGACTTATGCAGAGATTGTTGGTGTATGTTT
ATAGACGGATGCATTCTGAGGGCAATGCATCCTTGTTTTATCGTGTCATC
GGGCAATATAGCTTGTTAGTGATGCGCAAAGCACAGTTTTTGGATGATGA
CCACTTGTTGATTCGTTTAGGTTCTTCTAATCTTAATGAGCATGGTGTCC
AACCGCCGGATGTGTTAGCGAGAGACACTTGTTTCTTCGTTGTGTATTGT
ATGTCTACCACTCGCATTATCAACTTGTATGAAAACAGATCTACCCAACT
GTTGCGTATCTTTCGCACGTATAGAGATGCGTTTGTGGGTGACGAAATGG
AAGCGGCATCTTTACCACCATCGAGAAATAGTGTGCTGGATGAAGGGCAA
CGCAGAGAGGAGGAAAATGATCAGGGAAACACTACACGTAGGGATGGTAT
CGGCGAACGAGCGGACTGGTGGTCAAGCGTTGCAAGTCGACGAGGCACTT
CTGAACGAGTCAGAAGGACCCGGTTGGAGTTGTCGCGCATTCCTATGTCG
AGACAAGTGCGGATGGTGTCCCCGTACTTGGACCGCTCGTTGTTCTCGTA
TAATTCTGAAAGAAGCTATGTGCTGACCGCTAGAAGATTCGCACCCGCAA
AGGATTTGGGCAGCGTCAAGTTCATGAGCGCGGAAACTGGAGAGTTGAGA
TTCAAGTTGGCGACGGAGTTTAGCTTGTTGGATGGTGAAGTGGGGGGAGA
GAGGTATGCGACGGACATGGAGGACGGTGGTCTACGGCGAAGAATGTTTC
TCTTTCACCCGCTTTTGCCGTTTGTCATGGCGATGGAGGGGCATCGTCCG
GTTAACTTTCATGTCTATGGACATGCTGCATGA

Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:17764..19746-

>Gcaud2589.t1 ID=Gcaud2589.t1|Name=Gcaud2589.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1695bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:17764..19746- (Gracilaria caudata M_176_S67 male)
ATGAGACGACGTCGTGGTCGTCGTGGCATGCTTCACGCGCTGCGTCGACG
TGAAACTGGCAGCTTGTCGGGCAACTCGTTTCGACGTGCCACCTACTCCG
CGCTCGTTCCCTCCTCCACTTTTATTCATGTGCAAAAGACCCAGTCCATA
TCGTCTACTCGCGCTTCCCACGTTCGTATATATGATACTTCTGCTTTCCC
GCCGCCTTCCTCACTTCATCCCGACTTTCAGCTTTCTTCACAACCGAATC
AGCCTTCCCTCTTGTTATCAGTACCTGTTCCAATTGCCGCTTCCGCTGCG
CAACAACCGCAGTCGCCTTCTCATGTACATAATCATCCGTCCTACACATG
CCAGTTTGCACAGTTTTTCACCCATATGTATACAATGTCCATAGTCAATG
GCACCGCTCACATTGCGAGGGACTTCTCTATAAGCACGTCGAGTGGAAGA
TACTTGATTCTCGCCTCATATCAACCTCAAAACCAACCTCATCATCCACC
CACTCAACAAGATCATCTACCGGCTATTTCATCGCTTCCTTCCATGACCG
TTACTTTTTATCTGGTCGAAGTTCGTACCGGGGTCATTGCCGACCGTTTC
ATTCTCTTGGACGATTATGTCAGGTTCGCTTCCCACGAAGGGGTCCATTT
CTACGGTGATATGCTTTGCATTCTTTCCATGAGGCACCAAGTCCTACATA
TTGTCAAGATACAAGAGGCTTTAGGAAAGTTTACCGAAGAGCGATGTATT
GGTGCCATGTGCGATAGAGATGATCATCAAGTTATTGCTCGCGCCCGAGA
GGCGCAAAATGCTTACGTTGCCCACCGGGAGGAGGGGAGTCATTCAAATT
CCGACAAACCAGCTGCATCATACCAACCGCATGGTAATGAAAACGATCAT
AACGCCCAAGATGCTGCTGATGTAGTGGAGGAGGGCGATGATGAAGCCGA
ACAAAATGAGCCAAAGGAAACTGGCTTGGGCAACGGAATGCTAAAGAACG
CGTTTTATATCGGACTTATGCAGAGATTGTTGGTGTATGTTTATAGACGG
ATGCATTCTGAGGGCAATGCATCCTTGTTTTATCGTGTCATCGGGCAATA
TAGCTTCGAGAGACACTTGTTTCTTCGTTGTGTATTAGATGCGTTTGTGG
GTGACGAAATGGAAGCGGCATCTTTACCACCATCGAGAAATAGTGTGCTG
GATGAAGGGCAACGCAGAGAGGAGGAAAATGATCAGGGAAACACTACACG
TAGGGATGGTATCGGCGAACGAGCGGACTGGTGGTCAAGCGTTGCAAGTC
GACGAGGCACTTCTGAACGAGTCAGAAGGACCCGGTTGGAGTTGTCGCGC
ATTCCTATGTCGAGACAAGTGCGGATGGTGTCCCCGTACTTGGACCGCTC
GTTGTTCTCGTATAATTCTGAAAGAAGCTATGTGCTGACCGCTAGAAGAT
TCGCACCCGCAAAGGATTTGGGCAGCGTCAAGTTCATGAGCGCGGAAACT
GGAGAGTTGAGATTCAAGTTGGCGACGGAGTTTAGCTTGTTGGATGGTGA
AGTGGGGGGAGAGAGGTATGCGACGGACATGGAGGACGGTGGTCTACGGC
GAAGAATGTTTCTCTTTCACCCGCTTTTGCCGTTTGTCATGGCGATGGAG
GGGCATCGTCCGGTTAACTTTCATGTCTATGGACATGCTGCATGA