Gcaud2587.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2587.t1
Unique Name	Gcaud2587.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	320

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_53_length_63756_cov_4.464180	contig	NODE_53_length_63756_cov_4.464180:8394..9353 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706294.1
PFAMs	TPT
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15281
KEGG TC	2.A.7.15
GOs	GO:0003674,GO:0005215,GO:0005338,GO:0006810,GO:0008150,GO:0015165,GO:0015780,GO:0015931,GO:0015932,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0090481,GO:1901264,GO:1901505
Evalue	7.16e-63
EggNOG OGs	COG5070@1\|root,KOG1444@2759\|Eukaryota
Description	nucleotide-sugar transmembrane transporter activity
COG category	GOU
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2587	Gcaud2587	Gracilaria caudata M_176_S67 male	gene	NODE_53_length_63756_cov_4.464180 8394..9353 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2587.t1.start1	Gcaud2587.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_53_length_63756_cov_4.464180 8394..8396 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2587.t1.CDS1	Gcaud2587.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_53_length_63756_cov_4.464180 8394..9353 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2587.t1.exon1	Gcaud2587.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_53_length_63756_cov_4.464180 8394..9353 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2587.t1.stop1	Gcaud2587.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_53_length_63756_cov_4.464180 9351..9353 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2587.t1	Gcaud2587.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_53_length_63756_cov_4.464180 8394..9353 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_53_length_63756_cov_4.464180:8394..9353+
coding sequence from alignment at NODE_53_length_63756_cov_4.464180:8394..9353+

mRNA sequence

>Gcaud2587.t1 ID=Gcaud2587.t1|Name=Gcaud2587.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=320bp
MLLQLVVSVSALTLLRVMRVITIPQRSTRQIAVLLLPAVFFISNVTVGLL
ALKLVNIPMFSAFRRLSVLSVMLLEYIVLRKTASRSIIATVFVMVAGSFL
AGLGDLAFDPLGYCLVFLNNFITAANLVSIKKASQIARLDALPLFYYVSL
ISLPIVFLLSFVSGELSQAITDVYARPDLHSIGFVFALSLSAASAFLINF
FTNMCTQLTSPLTTAITGQMKNVLQTILGIFAFGYVVTPLNLFGLAVALA
GSLLFARQKYREAQNAKIGKPARASSSGHLSVPVPQTSGDQVHERKAAEY
EAKTPMLRTSGKMVSAAAG*

spliced messenger RNA

>Gcaud2587.t1 ID=Gcaud2587.t1|Name=Gcaud2587.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=960bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:8394..9353+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTTGCAGCTTGTGGTTTCTGTGTCCGCTCTGACTTTGTTGCGTGT
CATGCGAGTTATTACTATTCCGCAACGCTCTACTAGACAGATTGCGGTGT
TACTTTTGCCGGCAGTGTTCTTCATTTCTAATGTAACTGTTGGATTGCTT
GCACTAAAGCTTGTTAACATTCCCATGTTCTCCGCTTTTCGACGACTTAG
CGTGCTGTCTGTCATGCTGCTGGAGTACATTGTGCTGCGAAAGACTGCGT
CGCGTTCAATTATCGCCACTGTTTTTGTCATGGTTGCTGGAAGCTTTCTT
GCCGGTTTGGGTGATCTCGCGTTCGATCCTCTGGGATATTGTCTTGTGTT
TCTCAACAATTTTATCACCGCCGCCAACTTGGTATCCATTAAGAAAGCGT
CACAAATTGCGCGCCTAGACGCACTGCCTCTCTTCTACTACGTTTCACTC
ATCTCGCTACCCATTGTCTTTTTGCTTAGTTTTGTTTCCGGCGAACTCTC
TCAAGCTATCACCGATGTGTACGCACGTCCGGATTTGCATTCTATCGGTT
TTGTATTCGCGCTCTCGTTATCCGCCGCCTCCGCGTTTCTCATCAACTTT
TTCACCAACATGTGCACTCAACTCACGTCGCCTCTCACCACCGCTATCAC
CGGTCAGATGAAGAATGTGTTGCAGACCATTCTCGGAATTTTTGCTTTTG
GATATGTGGTTACTCCGCTCAATCTGTTCGGTTTGGCTGTTGCGTTGGCT
GGCTCGTTGTTGTTTGCCAGACAGAAGTATCGAGAGGCCCAGAATGCCAA
GATCGGGAAACCTGCTCGAGCTTCTTCTAGTGGTCACTTGTCGGTTCCCG
TGCCACAAACTTCGGGTGACCAAGTGCATGAAAGAAAGGCGGCGGAATAT
GAGGCTAAGACACCGATGTTGCGGACGAGTGGAAAAATGGTTTCGGCGGC
AGCGGGGTAG

protein sequence of Gcaud2587.t1

>Gcaud2587.t1 ID=Gcaud2587.t1|Name=Gcaud2587.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=320bp
MLLQLVVSVSALTLLRVMRVITIPQRSTRQIAVLLLPAVFFISNVTVGLL
ALKLVNIPMFSAFRRLSVLSVMLLEYIVLRKTASRSIIATVFVMVAGSFL
AGLGDLAFDPLGYCLVFLNNFITAANLVSIKKASQIARLDALPLFYYVSL
ISLPIVFLLSFVSGELSQAITDVYARPDLHSIGFVFALSLSAASAFLINF
FTNMCTQLTSPLTTAITGQMKNVLQTILGIFAFGYVVTPLNLFGLAVALA
GSLLFARQKYREAQNAKIGKPARASSSGHLSVPVPQTSGDQVHERKAAEY
EAKTPMLRTSGKMVSAAAG*

mRNA from alignment at NODE_53_length_63756_cov_4.464180:8394..9353+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2587.t1 ID=Gcaud2587.t1|Name=Gcaud2587.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=960bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:8394..9353+ (Gracilaria caudata M_176_S67 male)
ATGCTGTTGCAGCTTGTGGTTTCTGTGTCCGCTCTGACTTTGTTGCGTGT
CATGCGAGTTATTACTATTCCGCAACGCTCTACTAGACAGATTGCGGTGT
TACTTTTGCCGGCAGTGTTCTTCATTTCTAATGTAACTGTTGGATTGCTT
GCACTAAAGCTTGTTAACATTCCCATGTTCTCCGCTTTTCGACGACTTAG
CGTGCTGTCTGTCATGCTGCTGGAGTACATTGTGCTGCGAAAGACTGCGT
CGCGTTCAATTATCGCCACTGTTTTTGTCATGGTTGCTGGAAGCTTTCTT
GCCGGTTTGGGTGATCTCGCGTTCGATCCTCTGGGATATTGTCTTGTGTT
TCTCAACAATTTTATCACCGCCGCCAACTTGGTATCCATTAAGAAAGCGT
CACAAATTGCGCGCCTAGACGCACTGCCTCTCTTCTACTACGTTTCACTC
ATCTCGCTACCCATTGTCTTTTTGCTTAGTTTTGTTTCCGGCGAACTCTC
TCAAGCTATCACCGATGTGTACGCACGTCCGGATTTGCATTCTATCGGTT
TTGTATTCGCGCTCTCGTTATCCGCCGCCTCCGCGTTTCTCATCAACTTT
TTCACCAACATGTGCACTCAACTCACGTCGCCTCTCACCACCGCTATCAC
CGGTCAGATGAAGAATGTGTTGCAGACCATTCTCGGAATTTTTGCTTTTG
GATATGTGGTTACTCCGCTCAATCTGTTCGGTTTGGCTGTTGCGTTGGCT
GGCTCGTTGTTGTTTGCCAGACAGAAGTATCGAGAGGCCCAGAATGCCAA
GATCGGGAAACCTGCTCGAGCTTCTTCTAGTGGTCACTTGTCGGTTCCCG
TGCCACAAACTTCGGGTGACCAAGTGCATGAAAGAAAGGCGGCGGAATAT
GAGGCTAAGACACCGATGTTGCGGACGAGTGGAAAAATGGTTTCGGCGGC
AGCGGGGTAG

Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:8394..9353+

>Gcaud2587.t1 ID=Gcaud2587.t1|Name=Gcaud2587.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=960bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:8394..9353+ (Gracilaria caudata M_176_S67 male)
ATGCTGTTGCAGCTTGTGGTTTCTGTGTCCGCTCTGACTTTGTTGCGTGT
CATGCGAGTTATTACTATTCCGCAACGCTCTACTAGACAGATTGCGGTGT
TACTTTTGCCGGCAGTGTTCTTCATTTCTAATGTAACTGTTGGATTGCTT
GCACTAAAGCTTGTTAACATTCCCATGTTCTCCGCTTTTCGACGACTTAG
CGTGCTGTCTGTCATGCTGCTGGAGTACATTGTGCTGCGAAAGACTGCGT
CGCGTTCAATTATCGCCACTGTTTTTGTCATGGTTGCTGGAAGCTTTCTT
GCCGGTTTGGGTGATCTCGCGTTCGATCCTCTGGGATATTGTCTTGTGTT
TCTCAACAATTTTATCACCGCCGCCAACTTGGTATCCATTAAGAAAGCGT
CACAAATTGCGCGCCTAGACGCACTGCCTCTCTTCTACTACGTTTCACTC
ATCTCGCTACCCATTGTCTTTTTGCTTAGTTTTGTTTCCGGCGAACTCTC
TCAAGCTATCACCGATGTGTACGCACGTCCGGATTTGCATTCTATCGGTT
TTGTATTCGCGCTCTCGTTATCCGCCGCCTCCGCGTTTCTCATCAACTTT
TTCACCAACATGTGCACTCAACTCACGTCGCCTCTCACCACCGCTATCAC
CGGTCAGATGAAGAATGTGTTGCAGACCATTCTCGGAATTTTTGCTTTTG
GATATGTGGTTACTCCGCTCAATCTGTTCGGTTTGGCTGTTGCGTTGGCT
GGCTCGTTGTTGTTTGCCAGACAGAAGTATCGAGAGGCCCAGAATGCCAA
GATCGGGAAACCTGCTCGAGCTTCTTCTAGTGGTCACTTGTCGGTTCCCG
TGCCACAAACTTCGGGTGACCAAGTGCATGAAAGAAAGGCGGCGGAATAT
GAGGCTAAGACACCGATGTTGCGGACGAGTGGAAAAATGGTTTCGGCGGC
AGCGGGGTAG