Gcaud2584.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2584.t1
Unique Name	Gcaud2584.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	628

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_53_length_63756_cov_4.464180	contig	NODE_53_length_63756_cov_4.464180:4249..6132 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2584	Gcaud2584	Gracilaria caudata M_176_S67 male	gene	NODE_53_length_63756_cov_4.464180 4249..6132 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2584.t1.start1	Gcaud2584.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_53_length_63756_cov_4.464180 4249..4251 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2584.t1.CDS1	Gcaud2584.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_53_length_63756_cov_4.464180 4249..6132 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2584.t1.exon1	Gcaud2584.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_53_length_63756_cov_4.464180 4249..6132 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2584.t1.stop1	Gcaud2584.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_53_length_63756_cov_4.464180 6130..6132 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2584.t1	Gcaud2584.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_53_length_63756_cov_4.464180 4249..6132 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_53_length_63756_cov_4.464180:4249..6132+
coding sequence from alignment at NODE_53_length_63756_cov_4.464180:4249..6132+

mRNA sequence

>Gcaud2584.t1 ID=Gcaud2584.t1|Name=Gcaud2584.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=628bp
MAEQDSMQALADSAELVLPVYALVLTPLALYVYHDILDKRWRPVWRLSHF
LVAYFILYICAGSALVSYIVIQARYGKDFKEVGASALALILGTYGAWRLV
RLIRIIIAHHSLVKILQRIDCSLASETGLQPVGLEYHLFRHPRTALPSRL
EHTHWRYETRHDFISSALFDDDYPGDTAARIRWLACFGKRAVVIEDDAEE
CASRVAIWMRLVLRRPRSEPWRLLTSSSPLVQGQLYRVGLGEALRALITN
GSAKKAPLHANLNPAEILLNKIEKHSLTEAAVGFFWIGSEMGTEEMTQVL
AEMPPRWMRGVSQNGKQLMFELVMSLLLCEMPSPENKGMAWILSLPVLEW
RRDVANLKVWSVLSELCADAVCSVLPEFSSECESRSHDEVYNIVRDGVFS
LQEATSSEHGFQGDIVGLSLMELTRASYRSGYMTEQILGRALQQELNRQK
DEDKEVRIYKAEIVTGLFSILQQLGQDESEEFQSSFSSMKSSWGVDESID
DVLLAIRERTKHEMRESFQFDEVAQSRGWYLGDRNCQCEDPVSAFGTAYT
TAEELAPLVLQMLRQYKEKKPGVCILKGHANPDRYSEQWIRWKQTQAYEI
GGSAEGLSAETPGSGSNEKGSVAVSLW*

spliced messenger RNA

>Gcaud2584.t1 ID=Gcaud2584.t1|Name=Gcaud2584.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1884bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:4249..6132+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAACAGGACTCAATGCAAGCACTCGCCGACAGCGCCGAGCTTGT
GCTCCCTGTGTACGCACTCGTTCTCACCCCGCTCGCGCTTTACGTCTATC
ACGACATTTTGGACAAACGATGGCGTCCGGTCTGGCGTCTCTCCCACTTC
CTTGTCGCTTACTTCATTCTTTACATATGTGCCGGTAGCGCGCTCGTATC
ATACATTGTAATCCAAGCTCGTTACGGCAAAGACTTCAAAGAAGTCGGCG
CCTCCGCCCTCGCCCTCATCCTAGGCACCTACGGCGCCTGGCGCCTTGTC
CGTCTAATTCGCATCATAATCGCCCATCACTCGCTCGTCAAAATTCTCCA
GCGCATCGACTGTTCCCTCGCGTCAGAGACCGGTCTACAGCCGGTTGGTT
TGGAGTATCACTTGTTCCGACATCCACGAACTGCGCTTCCATCGCGATTG
GAACACACTCATTGGCGCTACGAAACTCGCCATGACTTCATTTCATCCGC
ACTATTCGACGACGACTATCCCGGTGACACCGCCGCTCGCATTCGTTGGC
TAGCCTGTTTCGGTAAACGAGCTGTCGTAATAGAGGATGACGCCGAAGAA
TGTGCCTCCCGTGTCGCGATATGGATGCGACTGGTACTCAGACGTCCGCG
CAGTGAACCGTGGCGTCTGCTCACATCTAGCAGCCCTCTTGTACAAGGGC
AACTTTACCGCGTCGGTTTGGGCGAGGCACTACGTGCGCTCATCACAAAC
GGCAGCGCTAAGAAGGCGCCACTCCACGCCAATCTCAATCCTGCCGAAAT
CTTGCTCAACAAGATTGAAAAGCACAGCTTGACAGAAGCTGCAGTGGGTT
TCTTCTGGATCGGCTCTGAGATGGGTACCGAGGAGATGACCCAAGTATTG
GCCGAGATGCCGCCGAGATGGATGCGAGGTGTTAGTCAGAACGGTAAACA
ATTAATGTTCGAGTTGGTCATGTCGCTGCTACTTTGCGAAATGCCGTCGC
CTGAAAACAAGGGAATGGCGTGGATTCTTTCACTGCCCGTTCTCGAATGG
AGACGAGACGTGGCCAATCTCAAAGTATGGAGCGTATTATCTGAGCTTTG
TGCAGATGCGGTGTGTTCTGTATTGCCCGAGTTTTCGTCAGAGTGCGAGT
CACGTAGTCATGATGAGGTGTACAACATTGTGCGCGATGGCGTGTTTTCG
CTGCAGGAGGCAACATCTAGTGAACACGGATTTCAGGGTGATATCGTCGG
GCTCAGCCTGATGGAGTTGACAAGAGCATCTTATCGTTCCGGGTACATGA
CTGAACAAATCCTAGGCAGAGCACTTCAACAGGAGCTGAACCGGCAGAAG
GACGAAGACAAAGAGGTTCGCATTTACAAGGCAGAGATTGTAACAGGTTT
GTTCTCCATTCTGCAACAACTGGGACAAGACGAAAGCGAAGAGTTCCAAA
GTAGTTTCAGCTCAATGAAGAGTAGTTGGGGAGTGGATGAAAGCATCGAT
GACGTTCTTCTGGCTATTCGCGAGCGAACAAAACATGAGATGCGCGAGTC
ATTTCAATTTGATGAGGTTGCACAAAGTCGTGGTTGGTACCTTGGCGATC
GAAACTGTCAGTGCGAGGATCCGGTGTCTGCATTCGGCACGGCGTACACA
ACGGCGGAGGAACTGGCGCCATTGGTGTTGCAAATGTTGCGGCAGTACAA
GGAAAAGAAGCCCGGTGTGTGCATTTTAAAAGGTCATGCAAACCCCGACC
GATACAGTGAACAGTGGATCCGATGGAAGCAGACACAGGCATACGAAATT
GGCGGTAGTGCGGAGGGGTTGAGCGCGGAGACGCCCGGAAGCGGATCCAA
TGAAAAAGGAAGCGTAGCTGTATCACTGTGGTAA

protein sequence of Gcaud2584.t1

>Gcaud2584.t1 ID=Gcaud2584.t1|Name=Gcaud2584.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=628bp
MAEQDSMQALADSAELVLPVYALVLTPLALYVYHDILDKRWRPVWRLSHF
LVAYFILYICAGSALVSYIVIQARYGKDFKEVGASALALILGTYGAWRLV
RLIRIIIAHHSLVKILQRIDCSLASETGLQPVGLEYHLFRHPRTALPSRL
EHTHWRYETRHDFISSALFDDDYPGDTAARIRWLACFGKRAVVIEDDAEE
CASRVAIWMRLVLRRPRSEPWRLLTSSSPLVQGQLYRVGLGEALRALITN
GSAKKAPLHANLNPAEILLNKIEKHSLTEAAVGFFWIGSEMGTEEMTQVL
AEMPPRWMRGVSQNGKQLMFELVMSLLLCEMPSPENKGMAWILSLPVLEW
RRDVANLKVWSVLSELCADAVCSVLPEFSSECESRSHDEVYNIVRDGVFS
LQEATSSEHGFQGDIVGLSLMELTRASYRSGYMTEQILGRALQQELNRQK
DEDKEVRIYKAEIVTGLFSILQQLGQDESEEFQSSFSSMKSSWGVDESID
DVLLAIRERTKHEMRESFQFDEVAQSRGWYLGDRNCQCEDPVSAFGTAYT
TAEELAPLVLQMLRQYKEKKPGVCILKGHANPDRYSEQWIRWKQTQAYEI
GGSAEGLSAETPGSGSNEKGSVAVSLW*

mRNA from alignment at NODE_53_length_63756_cov_4.464180:4249..6132+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2584.t1 ID=Gcaud2584.t1|Name=Gcaud2584.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1884bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:4249..6132+ (Gracilaria caudata M_176_S67 male)
ATGGCCGAACAGGACTCAATGCAAGCACTCGCCGACAGCGCCGAGCTTGT
GCTCCCTGTGTACGCACTCGTTCTCACCCCGCTCGCGCTTTACGTCTATC
ACGACATTTTGGACAAACGATGGCGTCCGGTCTGGCGTCTCTCCCACTTC
CTTGTCGCTTACTTCATTCTTTACATATGTGCCGGTAGCGCGCTCGTATC
ATACATTGTAATCCAAGCTCGTTACGGCAAAGACTTCAAAGAAGTCGGCG
CCTCCGCCCTCGCCCTCATCCTAGGCACCTACGGCGCCTGGCGCCTTGTC
CGTCTAATTCGCATCATAATCGCCCATCACTCGCTCGTCAAAATTCTCCA
GCGCATCGACTGTTCCCTCGCGTCAGAGACCGGTCTACAGCCGGTTGGTT
TGGAGTATCACTTGTTCCGACATCCACGAACTGCGCTTCCATCGCGATTG
GAACACACTCATTGGCGCTACGAAACTCGCCATGACTTCATTTCATCCGC
ACTATTCGACGACGACTATCCCGGTGACACCGCCGCTCGCATTCGTTGGC
TAGCCTGTTTCGGTAAACGAGCTGTCGTAATAGAGGATGACGCCGAAGAA
TGTGCCTCCCGTGTCGCGATATGGATGCGACTGGTACTCAGACGTCCGCG
CAGTGAACCGTGGCGTCTGCTCACATCTAGCAGCCCTCTTGTACAAGGGC
AACTTTACCGCGTCGGTTTGGGCGAGGCACTACGTGCGCTCATCACAAAC
GGCAGCGCTAAGAAGGCGCCACTCCACGCCAATCTCAATCCTGCCGAAAT
CTTGCTCAACAAGATTGAAAAGCACAGCTTGACAGAAGCTGCAGTGGGTT
TCTTCTGGATCGGCTCTGAGATGGGTACCGAGGAGATGACCCAAGTATTG
GCCGAGATGCCGCCGAGATGGATGCGAGGTGTTAGTCAGAACGGTAAACA
ATTAATGTTCGAGTTGGTCATGTCGCTGCTACTTTGCGAAATGCCGTCGC
CTGAAAACAAGGGAATGGCGTGGATTCTTTCACTGCCCGTTCTCGAATGG
AGACGAGACGTGGCCAATCTCAAAGTATGGAGCGTATTATCTGAGCTTTG
TGCAGATGCGGTGTGTTCTGTATTGCCCGAGTTTTCGTCAGAGTGCGAGT
CACGTAGTCATGATGAGGTGTACAACATTGTGCGCGATGGCGTGTTTTCG
CTGCAGGAGGCAACATCTAGTGAACACGGATTTCAGGGTGATATCGTCGG
GCTCAGCCTGATGGAGTTGACAAGAGCATCTTATCGTTCCGGGTACATGA
CTGAACAAATCCTAGGCAGAGCACTTCAACAGGAGCTGAACCGGCAGAAG
GACGAAGACAAAGAGGTTCGCATTTACAAGGCAGAGATTGTAACAGGTTT
GTTCTCCATTCTGCAACAACTGGGACAAGACGAAAGCGAAGAGTTCCAAA
GTAGTTTCAGCTCAATGAAGAGTAGTTGGGGAGTGGATGAAAGCATCGAT
GACGTTCTTCTGGCTATTCGCGAGCGAACAAAACATGAGATGCGCGAGTC
ATTTCAATTTGATGAGGTTGCACAAAGTCGTGGTTGGTACCTTGGCGATC
GAAACTGTCAGTGCGAGGATCCGGTGTCTGCATTCGGCACGGCGTACACA
ACGGCGGAGGAACTGGCGCCATTGGTGTTGCAAATGTTGCGGCAGTACAA
GGAAAAGAAGCCCGGTGTGTGCATTTTAAAAGGTCATGCAAACCCCGACC
GATACAGTGAACAGTGGATCCGATGGAAGCAGACACAGGCATACGAAATT
GGCGGTAGTGCGGAGGGGTTGAGCGCGGAGACGCCCGGAAGCGGATCCAA
TGAAAAAGGAAGCGTAGCTGTATCACTGTGGTAA

Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:4249..6132+

>Gcaud2584.t1 ID=Gcaud2584.t1|Name=Gcaud2584.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1884bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:4249..6132+ (Gracilaria caudata M_176_S67 male)
ATGGCCGAACAGGACTCAATGCAAGCACTCGCCGACAGCGCCGAGCTTGT
GCTCCCTGTGTACGCACTCGTTCTCACCCCGCTCGCGCTTTACGTCTATC
ACGACATTTTGGACAAACGATGGCGTCCGGTCTGGCGTCTCTCCCACTTC
CTTGTCGCTTACTTCATTCTTTACATATGTGCCGGTAGCGCGCTCGTATC
ATACATTGTAATCCAAGCTCGTTACGGCAAAGACTTCAAAGAAGTCGGCG
CCTCCGCCCTCGCCCTCATCCTAGGCACCTACGGCGCCTGGCGCCTTGTC
CGTCTAATTCGCATCATAATCGCCCATCACTCGCTCGTCAAAATTCTCCA
GCGCATCGACTGTTCCCTCGCGTCAGAGACCGGTCTACAGCCGGTTGGTT
TGGAGTATCACTTGTTCCGACATCCACGAACTGCGCTTCCATCGCGATTG
GAACACACTCATTGGCGCTACGAAACTCGCCATGACTTCATTTCATCCGC
ACTATTCGACGACGACTATCCCGGTGACACCGCCGCTCGCATTCGTTGGC
TAGCCTGTTTCGGTAAACGAGCTGTCGTAATAGAGGATGACGCCGAAGAA
TGTGCCTCCCGTGTCGCGATATGGATGCGACTGGTACTCAGACGTCCGCG
CAGTGAACCGTGGCGTCTGCTCACATCTAGCAGCCCTCTTGTACAAGGGC
AACTTTACCGCGTCGGTTTGGGCGAGGCACTACGTGCGCTCATCACAAAC
GGCAGCGCTAAGAAGGCGCCACTCCACGCCAATCTCAATCCTGCCGAAAT
CTTGCTCAACAAGATTGAAAAGCACAGCTTGACAGAAGCTGCAGTGGGTT
TCTTCTGGATCGGCTCTGAGATGGGTACCGAGGAGATGACCCAAGTATTG
GCCGAGATGCCGCCGAGATGGATGCGAGGTGTTAGTCAGAACGGTAAACA
ATTAATGTTCGAGTTGGTCATGTCGCTGCTACTTTGCGAAATGCCGTCGC
CTGAAAACAAGGGAATGGCGTGGATTCTTTCACTGCCCGTTCTCGAATGG
AGACGAGACGTGGCCAATCTCAAAGTATGGAGCGTATTATCTGAGCTTTG
TGCAGATGCGGTGTGTTCTGTATTGCCCGAGTTTTCGTCAGAGTGCGAGT
CACGTAGTCATGATGAGGTGTACAACATTGTGCGCGATGGCGTGTTTTCG
CTGCAGGAGGCAACATCTAGTGAACACGGATTTCAGGGTGATATCGTCGG
GCTCAGCCTGATGGAGTTGACAAGAGCATCTTATCGTTCCGGGTACATGA
CTGAACAAATCCTAGGCAGAGCACTTCAACAGGAGCTGAACCGGCAGAAG
GACGAAGACAAAGAGGTTCGCATTTACAAGGCAGAGATTGTAACAGGTTT
GTTCTCCATTCTGCAACAACTGGGACAAGACGAAAGCGAAGAGTTCCAAA
GTAGTTTCAGCTCAATGAAGAGTAGTTGGGGAGTGGATGAAAGCATCGAT
GACGTTCTTCTGGCTATTCGCGAGCGAACAAAACATGAGATGCGCGAGTC
ATTTCAATTTGATGAGGTTGCACAAAGTCGTGGTTGGTACCTTGGCGATC
GAAACTGTCAGTGCGAGGATCCGGTGTCTGCATTCGGCACGGCGTACACA
ACGGCGGAGGAACTGGCGCCATTGGTGTTGCAAATGTTGCGGCAGTACAA
GGAAAAGAAGCCCGGTGTGTGCATTTTAAAAGGTCATGCAAACCCCGACC
GATACAGTGAACAGTGGATCCGATGGAAGCAGACACAGGCATACGAAATT
GGCGGTAGTGCGGAGGGGTTGAGCGCGGAGACGCCCGGAAGCGGATCCAA
TGAAAAAGGAAGCGTAGCTGTATCACTGTGGTAA