Gcaud2583.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2583.t1
Unique Name	Gcaud2583.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	599

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_53_length_63756_cov_4.464180	contig	NODE_53_length_63756_cov_4.464180:423..2419 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708683.1
Preferred name	NAGS1
PFAMs	AA_kinase,Acetyltransf_1
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00064
KEGG ko	ko:K14682
KEGG Reaction	R00259
KEGG Pathway	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230
KEGG Module	M00028
Evalue	3.44e-168
EggNOG OGs	COG0548@1\|root,KOG2436@2759\|Eukaryota
EC	2.3.1.1
Description	acetyl-CoA:L-glutamate N-acetyltransferase activity
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2583	Gcaud2583	Gracilaria caudata M_176_S67 male	gene	NODE_53_length_63756_cov_4.464180 423..2419 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2583.t1	Gcaud2583.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_53_length_63756_cov_4.464180 423..2419 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2583.t1.stop1	Gcaud2583.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_53_length_63756_cov_4.464180 423..425 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2583.t1.CDS1	Gcaud2583.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_53_length_63756_cov_4.464180 423..455 -
Gcaud2583.t1.CDS2	Gcaud2583.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_53_length_63756_cov_4.464180 656..2419 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2583.t1.exon1	Gcaud2583.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_53_length_63756_cov_4.464180 423..455 -
Gcaud2583.t1.exon2	Gcaud2583.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_53_length_63756_cov_4.464180 656..2419 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2583.t1.intron1	Gcaud2583.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_53_length_63756_cov_4.464180 456..655 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2583.t1.start1	Gcaud2583.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_53_length_63756_cov_4.464180 2417..2419 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_53_length_63756_cov_4.464180:423..2419-
coding sequence from alignment at NODE_53_length_63756_cov_4.464180:423..2419-

mRNA sequence

>Gcaud2583.t1 ID=Gcaud2583.t1|Name=Gcaud2583.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=599bp
MRLAFVSTSLSVSAFRGTSLAVSHVSRRVSPARLVRASLNGTGNGKLDAV
SSPSTFAPSRSSPSSHPEQPPSDSFSDSEEIYFDGLSYPTQVLEWCTTNP
ESLDPALYQQSSFAYESRPSPYSSEAVVDAVPGRLCEGDHHFYASRVHQN
FVDTFRMSSPYINAHQGLVFVIHIPGALLYERLFSAVMEDIALMHVVGIK
IVLVLGPQAQIDRRMKAEELPSYFIGGIRITDSRTLQLVKEAAGSMRFEV
ESTLGRGVKNMPSASRISVVSGSFYSAQPVGIINGQDFGYSGKVRRVDVE
AINRRLDDGDIIIIPNVGFSPSGQMFNCRSEEVAAACASQLNAEKLIFMG
NGETLFDTRTDHTIPNLSLKTAARFLKTRASELPPQFRKSLECSVIALKN
GVRRAHLLNRLMDGALLMEIFHRDGVGLMISRDLYEGFRKARLSDVSGLQ
EIIRPLEEQGILKPRSRRKLEQDIHEFVVIERDGMVIACLSLSQMEDDPT
WAELGCLAVHHDYRKLGKGDAMLGFTERMAYNMGVRFLFILSTQSFDWFQ
ERGFTAATISDLPPSKQANYDRTRKSKVFLKVLEGSRAVDEAEVLKHL*

spliced messenger RNA

>Gcaud2583.t1 ID=Gcaud2583.t1|Name=Gcaud2583.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1797bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:423..2419- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCTCGCTTTTGTTTCCACCTCGCTTTCTGTGTCTGCCTTTCGGGG
CACGTCACTAGCCGTCAGCCATGTTTCCAGACGCGTTTCGCCTGCTCGTT
TGGTGCGTGCGTCTTTAAATGGGACTGGAAACGGGAAACTTGACGCCGTT
TCCTCGCCTTCTACTTTCGCTCCTTCTCGTTCCAGCCCATCTTCACACCC
AGAGCAGCCGCCTTCAGACTCGTTTTCGGACAGTGAAGAGATTTACTTTG
ACGGCCTTTCATACCCAACGCAGGTGCTGGAATGGTGCACCACAAACCCG
GAATCACTTGACCCTGCTCTTTACCAACAGTCCTCGTTTGCATACGAGTC
TCGCCCGTCTCCATACTCAAGCGAGGCCGTTGTGGATGCGGTTCCTGGCC
GTCTTTGTGAGGGAGATCATCACTTTTATGCCTCACGTGTGCATCAGAAC
TTTGTCGATACTTTTCGAATGAGTTCGCCCTATATCAATGCGCATCAGGG
ATTGGTATTTGTCATTCATATACCCGGTGCTTTGTTGTATGAACGTTTGT
TTTCTGCGGTGATGGAGGATATAGCCCTCATGCATGTTGTTGGCATTAAA
ATCGTTCTTGTTCTAGGACCACAAGCTCAGATTGACCGACGCATGAAAGC
TGAGGAGTTGCCATCGTACTTCATTGGTGGAATTCGTATCACCGACTCCC
GTACCCTGCAACTTGTCAAAGAAGCTGCTGGCAGTATGAGATTTGAAGTT
GAAAGCACGCTTGGACGTGGTGTGAAAAACATGCCAAGTGCCAGTCGCAT
CAGTGTCGTAAGTGGCAGTTTCTACTCTGCGCAGCCTGTTGGAATCATCA
ATGGTCAAGACTTTGGTTACTCTGGAAAAGTTCGACGTGTCGATGTTGAA
GCCATTAATCGACGACTGGACGATGGTGATATCATCATCATTCCTAACGT
CGGCTTTTCGCCTTCTGGTCAGATGTTCAATTGCAGATCAGAGGAAGTTG
CTGCTGCGTGTGCTAGTCAGTTAAACGCTGAGAAGCTTATCTTTATGGGA
AATGGTGAAACGCTGTTTGATACGCGCACTGATCATACAATTCCTAATCT
TTCGCTCAAGACTGCCGCTCGTTTCTTGAAAACCAGGGCGAGTGAGCTGC
CGCCTCAGTTTAGAAAATCTCTGGAGTGTTCTGTTATTGCCTTGAAGAAT
GGTGTTCGCCGTGCGCATCTGTTGAATCGTCTAATGGATGGGGCGTTGCT
CATGGAGATATTTCACCGTGATGGCGTTGGGCTCATGATTTCTCGCGATC
TTTACGAAGGCTTTAGAAAAGCCAGGCTCTCTGATGTGAGCGGCCTTCAG
GAAATTATCAGACCGCTTGAAGAGCAAGGTATCCTCAAACCTCGTTCTCG
AAGGAAGCTGGAACAAGACATCCACGAGTTTGTCGTCATAGAGAGAGACG
GAATGGTTATCGCCTGTCTATCACTGTCCCAAATGGAAGATGATCCCACA
TGGGCCGAACTCGGTTGTCTAGCAGTGCATCACGATTACCGAAAGCTTGG
CAAAGGTGATGCAATGCTCGGATTCACGGAACGAATGGCGTATAACATGG
GCGTTCGTTTCCTTTTTATTCTTTCTACGCAGAGCTTTGACTGGTTCCAA
GAACGTGGGTTTACGGCCGCTACAATTAGCGATCTTCCTCCATCTAAACA
GGCGAATTACGACAGGACCAGAAAGTCAAAAGTGTTCCTCAAAGTTCTGG
AAGGTAGCAGAGCGGTTGACGAAGCGGAGGTTCTCAAGCACTTATGA

protein sequence of Gcaud2583.t1

>Gcaud2583.t1 ID=Gcaud2583.t1|Name=Gcaud2583.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=599bp
MRLAFVSTSLSVSAFRGTSLAVSHVSRRVSPARLVRASLNGTGNGKLDAV
SSPSTFAPSRSSPSSHPEQPPSDSFSDSEEIYFDGLSYPTQVLEWCTTNP
ESLDPALYQQSSFAYESRPSPYSSEAVVDAVPGRLCEGDHHFYASRVHQN
FVDTFRMSSPYINAHQGLVFVIHIPGALLYERLFSAVMEDIALMHVVGIK
IVLVLGPQAQIDRRMKAEELPSYFIGGIRITDSRTLQLVKEAAGSMRFEV
ESTLGRGVKNMPSASRISVVSGSFYSAQPVGIINGQDFGYSGKVRRVDVE
AINRRLDDGDIIIIPNVGFSPSGQMFNCRSEEVAAACASQLNAEKLIFMG
NGETLFDTRTDHTIPNLSLKTAARFLKTRASELPPQFRKSLECSVIALKN
GVRRAHLLNRLMDGALLMEIFHRDGVGLMISRDLYEGFRKARLSDVSGLQ
EIIRPLEEQGILKPRSRRKLEQDIHEFVVIERDGMVIACLSLSQMEDDPT
WAELGCLAVHHDYRKLGKGDAMLGFTERMAYNMGVRFLFILSTQSFDWFQ
ERGFTAATISDLPPSKQANYDRTRKSKVFLKVLEGSRAVDEAEVLKHL*

mRNA from alignment at NODE_53_length_63756_cov_4.464180:423..2419-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2583.t1 ID=Gcaud2583.t1|Name=Gcaud2583.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1997bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:423..2419- (Gracilaria caudata M_176_S67 male)
ATGCGTCTCGCTTTTGTTTCCACCTCGCTTTCTGTGTCTGCCTTTCGGGG
CACGTCACTAGCCGTCAGCCATGTTTCCAGACGCGTTTCGCCTGCTCGTT
TGGTGCGTGCGTCTTTAAATGGGACTGGAAACGGGAAACTTGACGCCGTT
TCCTCGCCTTCTACTTTCGCTCCTTCTCGTTCCAGCCCATCTTCACACCC
AGAGCAGCCGCCTTCAGACTCGTTTTCGGACAGTGAAGAGATTTACTTTG
ACGGCCTTTCATACCCAACGCAGGTGCTGGAATGGTGCACCACAAACCCG
GAATCACTTGACCCTGCTCTTTACCAACAGTCCTCGTTTGCATACGAGTC
TCGCCCGTCTCCATACTCAAGCGAGGCCGTTGTGGATGCGGTTCCTGGCC
GTCTTTGTGAGGGAGATCATCACTTTTATGCCTCACGTGTGCATCAGAAC
TTTGTCGATACTTTTCGAATGAGTTCGCCCTATATCAATGCGCATCAGGG
ATTGGTATTTGTCATTCATATACCCGGTGCTTTGTTGTATGAACGTTTGT
TTTCTGCGGTGATGGAGGATATAGCCCTCATGCATGTTGTTGGCATTAAA
ATCGTTCTTGTTCTAGGACCACAAGCTCAGATTGACCGACGCATGAAAGC
TGAGGAGTTGCCATCGTACTTCATTGGTGGAATTCGTATCACCGACTCCC
GTACCCTGCAACTTGTCAAAGAAGCTGCTGGCAGTATGAGATTTGAAGTT
GAAAGCACGCTTGGACGTGGTGTGAAAAACATGCCAAGTGCCAGTCGCAT
CAGTGTCGTAAGTGGCAGTTTCTACTCTGCGCAGCCTGTTGGAATCATCA
ATGGTCAAGACTTTGGTTACTCTGGAAAAGTTCGACGTGTCGATGTTGAA
GCCATTAATCGACGACTGGACGATGGTGATATCATCATCATTCCTAACGT
CGGCTTTTCGCCTTCTGGTCAGATGTTCAATTGCAGATCAGAGGAAGTTG
CTGCTGCGTGTGCTAGTCAGTTAAACGCTGAGAAGCTTATCTTTATGGGA
AATGGTGAAACGCTGTTTGATACGCGCACTGATCATACAATTCCTAATCT
TTCGCTCAAGACTGCCGCTCGTTTCTTGAAAACCAGGGCGAGTGAGCTGC
CGCCTCAGTTTAGAAAATCTCTGGAGTGTTCTGTTATTGCCTTGAAGAAT
GGTGTTCGCCGTGCGCATCTGTTGAATCGTCTAATGGATGGGGCGTTGCT
CATGGAGATATTTCACCGTGATGGCGTTGGGCTCATGATTTCTCGCGATC
TTTACGAAGGCTTTAGAAAAGCCAGGCTCTCTGATGTGAGCGGCCTTCAG
GAAATTATCAGACCGCTTGAAGAGCAAGGTATCCTCAAACCTCGTTCTCG
AAGGAAGCTGGAACAAGACATCCACGAGTTTGTCGTCATAGAGAGAGACG
GAATGGTTATCGCCTGTCTATCACTGTCCCAAATGGAAGATGATCCCACA
TGGGCCGAACTCGGTTGTCTAGCAGTGCATCACGATTACCGAAAGCTTGG
CAAAGGTGATGCAATGCTCGGATTCACGGAACGAATGGCGTATAACATGG
GCGTTCGTTTCCTTTTTATTCTTTCTACGCAGAGCTTTGACTGGTTCCAA
GAACGTGGGTTTACGGCCGCTACAATTAGCGATCTTCCTCCATCTAAACA
GGCGAATTACGACAGGACCAGAAAGTCAAAAGTGTTCCTCAAAGTTCTGG
AAGGTAGCAGAGCGGTACGTCCATAATGAGTCTTTCTCGCGACCGTGTAC
GCATCCTACGATAAGCACTGCGCCTGAAATACGTTTATGGACCCACTTAC
GACGCGCGAGACACTATCACTTTCTTTTGAGTGATCTAACTTCTGTGAAC
TACGAAACGCTGACCTGTACTTACCTCTGTGCGGCTTCAATGCTTCCTTA
CGCACCTGTTTTAGGTTGACGAAGCGGAGGTTCTCAAGCACTTATGA

Coding sequence (CDS) from alignment at NODE_53_length_63756_cov_4.464180:423..2419-

>Gcaud2583.t1 ID=Gcaud2583.t1|Name=Gcaud2583.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1797bp|location=Sequence derived from alignment at NODE_53_length_63756_cov_4.464180:423..2419- (Gracilaria caudata M_176_S67 male)
ATGCGTCTCGCTTTTGTTTCCACCTCGCTTTCTGTGTCTGCCTTTCGGGG
CACGTCACTAGCCGTCAGCCATGTTTCCAGACGCGTTTCGCCTGCTCGTT
TGGTGCGTGCGTCTTTAAATGGGACTGGAAACGGGAAACTTGACGCCGTT
TCCTCGCCTTCTACTTTCGCTCCTTCTCGTTCCAGCCCATCTTCACACCC
AGAGCAGCCGCCTTCAGACTCGTTTTCGGACAGTGAAGAGATTTACTTTG
ACGGCCTTTCATACCCAACGCAGGTGCTGGAATGGTGCACCACAAACCCG
GAATCACTTGACCCTGCTCTTTACCAACAGTCCTCGTTTGCATACGAGTC
TCGCCCGTCTCCATACTCAAGCGAGGCCGTTGTGGATGCGGTTCCTGGCC
GTCTTTGTGAGGGAGATCATCACTTTTATGCCTCACGTGTGCATCAGAAC
TTTGTCGATACTTTTCGAATGAGTTCGCCCTATATCAATGCGCATCAGGG
ATTGGTATTTGTCATTCATATACCCGGTGCTTTGTTGTATGAACGTTTGT
TTTCTGCGGTGATGGAGGATATAGCCCTCATGCATGTTGTTGGCATTAAA
ATCGTTCTTGTTCTAGGACCACAAGCTCAGATTGACCGACGCATGAAAGC
TGAGGAGTTGCCATCGTACTTCATTGGTGGAATTCGTATCACCGACTCCC
GTACCCTGCAACTTGTCAAAGAAGCTGCTGGCAGTATGAGATTTGAAGTT
GAAAGCACGCTTGGACGTGGTGTGAAAAACATGCCAAGTGCCAGTCGCAT
CAGTGTCGTAAGTGGCAGTTTCTACTCTGCGCAGCCTGTTGGAATCATCA
ATGGTCAAGACTTTGGTTACTCTGGAAAAGTTCGACGTGTCGATGTTGAA
GCCATTAATCGACGACTGGACGATGGTGATATCATCATCATTCCTAACGT
CGGCTTTTCGCCTTCTGGTCAGATGTTCAATTGCAGATCAGAGGAAGTTG
CTGCTGCGTGTGCTAGTCAGTTAAACGCTGAGAAGCTTATCTTTATGGGA
AATGGTGAAACGCTGTTTGATACGCGCACTGATCATACAATTCCTAATCT
TTCGCTCAAGACTGCCGCTCGTTTCTTGAAAACCAGGGCGAGTGAGCTGC
CGCCTCAGTTTAGAAAATCTCTGGAGTGTTCTGTTATTGCCTTGAAGAAT
GGTGTTCGCCGTGCGCATCTGTTGAATCGTCTAATGGATGGGGCGTTGCT
CATGGAGATATTTCACCGTGATGGCGTTGGGCTCATGATTTCTCGCGATC
TTTACGAAGGCTTTAGAAAAGCCAGGCTCTCTGATGTGAGCGGCCTTCAG
GAAATTATCAGACCGCTTGAAGAGCAAGGTATCCTCAAACCTCGTTCTCG
AAGGAAGCTGGAACAAGACATCCACGAGTTTGTCGTCATAGAGAGAGACG
GAATGGTTATCGCCTGTCTATCACTGTCCCAAATGGAAGATGATCCCACA
TGGGCCGAACTCGGTTGTCTAGCAGTGCATCACGATTACCGAAAGCTTGG
CAAAGGTGATGCAATGCTCGGATTCACGGAACGAATGGCGTATAACATGG
GCGTTCGTTTCCTTTTTATTCTTTCTACGCAGAGCTTTGACTGGTTCCAA
GAACGTGGGTTTACGGCCGCTACAATTAGCGATCTTCCTCCATCTAAACA
GGCGAATTACGACAGGACCAGAAAGTCAAAAGTGTTCCTCAAAGTTCTGG
AAGGTAGCAGAGCGGTTGACGAAGCGGAGGTTCTCAAGCACTTATGA