Gcaud2581.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2581.t1
Unique Name	Gcaud2581.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	520

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_427_length_25918_cov_4.599721	contig	NODE_427_length_25918_cov_4.599721:23911..25470 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2581	Gcaud2581	Gracilaria caudata M_176_S67 male	gene	NODE_427_length_25918_cov_4.599721 23911..25470 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2581.t1.start1	Gcaud2581.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_427_length_25918_cov_4.599721 23911..23913 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2581.t1.CDS1	Gcaud2581.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_427_length_25918_cov_4.599721 23911..25470 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2581.t1.exon1	Gcaud2581.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_427_length_25918_cov_4.599721 23911..25470 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2581.t1.stop1	Gcaud2581.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_427_length_25918_cov_4.599721 25468..25470 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2581.t1	Gcaud2581.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_427_length_25918_cov_4.599721 23911..25470 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_427_length_25918_cov_4.599721:23911..25470+
coding sequence from alignment at NODE_427_length_25918_cov_4.599721:23911..25470+

mRNA sequence

>Gcaud2581.t1 ID=Gcaud2581.t1|Name=Gcaud2581.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=520bp
MIIISNDCSLQARIGFIIRLLLELSFKWGNPQMLTYAEVRPATTSYNERT
SPTPNSTISPVPTSVCHCPFRSPSVMIRDGYVTYADAATSLRNWRPESPL
LHELLFAVSMTCLVYQVTKLVLEIFLGQRRRGQMQISDFYIYTVVSSVSF
SSILPSLRTKRPVGGKRTKRKTPLIDTQAFHVSHIIATSKYITLLLVVPG
IQILGTFLSIETERVLHFSDVNFGGMSMGLRDGRSDVRLTGNSDCAEAES
LLATDETGMTDFFRCYGQFPIAFDNDRNFENNQTFIAILRSSPVDIGVTI
VVPKKRWISFLTLDMYDRKQSYKLRNSLSATDRAQIFERGIQEMTKPCLS
PTVTRGVDISWVIPPDLPQQEILSASVQCGPFDADFVAGVGNRMLDNVTF
VETERFEIAESAVFPPEFRSADDIVFFQRHRSNALLLPTVIAFFAVLGAR
MLVRFALYVEGPLALEMILKDRFALKCCDSMLQLEQIVCYGSDSDSSGAM
ESVSSIHTEGDESSLESNK*

spliced messenger RNA

>Gcaud2581.t1 ID=Gcaud2581.t1|Name=Gcaud2581.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1560bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:23911..25470+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCATCATTAGCAATGATTGCTCACTACAAGCGAGAATAGGTTTCAT
AATTCGTCTGCTTCTCGAACTGAGCTTCAAATGGGGAAATCCTCAAATGC
TCACATATGCGGAAGTACGGCCCGCGACTACTTCGTACAATGAAAGGACG
AGCCCAACTCCAAACAGCACCATTTCGCCTGTTCCCACTAGCGTTTGTCA
CTGCCCTTTTCGTTCTCCTTCAGTTATGATTCGTGATGGTTACGTTACAT
ACGCTGACGCTGCAACTAGTCTAAGAAACTGGCGCCCGGAAAGCCCCTTA
CTCCATGAGCTGTTGTTTGCCGTTTCTATGACTTGCTTGGTCTACCAAGT
CACTAAACTGGTTTTAGAGATTTTCCTTGGCCAAAGGCGTCGAGGACAGA
TGCAAATCTCCGATTTCTACATATATACCGTCGTATCTTCCGTCTCTTTT
TCGTCAATCTTGCCAAGCCTGCGAACCAAGAGGCCCGTAGGGGGCAAAAG
GACTAAACGGAAAACCCCTTTGATAGATACCCAAGCGTTTCACGTATCTC
ATATCATTGCAACTTCAAAGTACATCACGCTTTTGCTCGTCGTACCAGGG
ATCCAAATTCTGGGAACCTTTCTCAGTATTGAAACAGAACGTGTATTGCA
CTTCAGCGACGTGAATTTTGGTGGAATGAGCATGGGATTAAGAGATGGGC
GATCTGACGTGAGGTTGACCGGAAATTCCGATTGCGCTGAAGCAGAATCT
CTGCTTGCAACGGACGAGACTGGGATGACTGATTTCTTTCGCTGCTACGG
CCAGTTCCCTATTGCGTTCGACAACGATAGGAACTTTGAGAACAACCAAA
CGTTTATTGCCATTCTGAGGTCAAGTCCAGTTGATATCGGAGTTACCATT
GTCGTACCAAAGAAAAGGTGGATTTCCTTTTTGACCCTGGATATGTATGA
CAGAAAGCAATCATACAAACTGAGAAACTCTTTAAGCGCCACTGATCGAG
CTCAAATCTTTGAAAGAGGGATTCAAGAAATGACGAAACCATGCTTGTCA
CCCACGGTTACAAGAGGAGTCGATATTTCATGGGTAATACCCCCTGATCT
CCCTCAGCAGGAGATTCTATCTGCGTCTGTACAATGTGGCCCATTTGACG
CCGATTTTGTCGCCGGTGTTGGAAATAGGATGTTAGACAACGTAACCTTC
GTAGAAACAGAGCGTTTTGAGATTGCTGAGAGTGCAGTTTTCCCGCCCGA
GTTCAGATCTGCTGACGACATTGTGTTCTTCCAGAGGCATCGCAGTAATG
CGTTACTTTTGCCCACAGTAATCGCTTTTTTCGCTGTTCTTGGGGCTAGA
ATGCTGGTGAGGTTTGCTCTTTATGTGGAGGGGCCGCTTGCGTTGGAAAT
GATTTTGAAGGACCGATTTGCTCTGAAATGTTGCGATTCCATGCTTCAAC
TGGAACAAATTGTATGCTACGGGTCTGATTCTGATTCTTCTGGTGCGATG
GAGAGTGTATCATCGATTCACACTGAAGGGGATGAATCATCTTTGGAGTC
GAATAAATGA

protein sequence of Gcaud2581.t1

>Gcaud2581.t1 ID=Gcaud2581.t1|Name=Gcaud2581.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=520bp
MIIISNDCSLQARIGFIIRLLLELSFKWGNPQMLTYAEVRPATTSYNERT
SPTPNSTISPVPTSVCHCPFRSPSVMIRDGYVTYADAATSLRNWRPESPL
LHELLFAVSMTCLVYQVTKLVLEIFLGQRRRGQMQISDFYIYTVVSSVSF
SSILPSLRTKRPVGGKRTKRKTPLIDTQAFHVSHIIATSKYITLLLVVPG
IQILGTFLSIETERVLHFSDVNFGGMSMGLRDGRSDVRLTGNSDCAEAES
LLATDETGMTDFFRCYGQFPIAFDNDRNFENNQTFIAILRSSPVDIGVTI
VVPKKRWISFLTLDMYDRKQSYKLRNSLSATDRAQIFERGIQEMTKPCLS
PTVTRGVDISWVIPPDLPQQEILSASVQCGPFDADFVAGVGNRMLDNVTF
VETERFEIAESAVFPPEFRSADDIVFFQRHRSNALLLPTVIAFFAVLGAR
MLVRFALYVEGPLALEMILKDRFALKCCDSMLQLEQIVCYGSDSDSSGAM
ESVSSIHTEGDESSLESNK*

mRNA from alignment at NODE_427_length_25918_cov_4.599721:23911..25470+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2581.t1 ID=Gcaud2581.t1|Name=Gcaud2581.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1560bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:23911..25470+ (Gracilaria caudata M_176_S67 male)
ATGATCATCATTAGCAATGATTGCTCACTACAAGCGAGAATAGGTTTCAT
AATTCGTCTGCTTCTCGAACTGAGCTTCAAATGGGGAAATCCTCAAATGC
TCACATATGCGGAAGTACGGCCCGCGACTACTTCGTACAATGAAAGGACG
AGCCCAACTCCAAACAGCACCATTTCGCCTGTTCCCACTAGCGTTTGTCA
CTGCCCTTTTCGTTCTCCTTCAGTTATGATTCGTGATGGTTACGTTACAT
ACGCTGACGCTGCAACTAGTCTAAGAAACTGGCGCCCGGAAAGCCCCTTA
CTCCATGAGCTGTTGTTTGCCGTTTCTATGACTTGCTTGGTCTACCAAGT
CACTAAACTGGTTTTAGAGATTTTCCTTGGCCAAAGGCGTCGAGGACAGA
TGCAAATCTCCGATTTCTACATATATACCGTCGTATCTTCCGTCTCTTTT
TCGTCAATCTTGCCAAGCCTGCGAACCAAGAGGCCCGTAGGGGGCAAAAG
GACTAAACGGAAAACCCCTTTGATAGATACCCAAGCGTTTCACGTATCTC
ATATCATTGCAACTTCAAAGTACATCACGCTTTTGCTCGTCGTACCAGGG
ATCCAAATTCTGGGAACCTTTCTCAGTATTGAAACAGAACGTGTATTGCA
CTTCAGCGACGTGAATTTTGGTGGAATGAGCATGGGATTAAGAGATGGGC
GATCTGACGTGAGGTTGACCGGAAATTCCGATTGCGCTGAAGCAGAATCT
CTGCTTGCAACGGACGAGACTGGGATGACTGATTTCTTTCGCTGCTACGG
CCAGTTCCCTATTGCGTTCGACAACGATAGGAACTTTGAGAACAACCAAA
CGTTTATTGCCATTCTGAGGTCAAGTCCAGTTGATATCGGAGTTACCATT
GTCGTACCAAAGAAAAGGTGGATTTCCTTTTTGACCCTGGATATGTATGA
CAGAAAGCAATCATACAAACTGAGAAACTCTTTAAGCGCCACTGATCGAG
CTCAAATCTTTGAAAGAGGGATTCAAGAAATGACGAAACCATGCTTGTCA
CCCACGGTTACAAGAGGAGTCGATATTTCATGGGTAATACCCCCTGATCT
CCCTCAGCAGGAGATTCTATCTGCGTCTGTACAATGTGGCCCATTTGACG
CCGATTTTGTCGCCGGTGTTGGAAATAGGATGTTAGACAACGTAACCTTC
GTAGAAACAGAGCGTTTTGAGATTGCTGAGAGTGCAGTTTTCCCGCCCGA
GTTCAGATCTGCTGACGACATTGTGTTCTTCCAGAGGCATCGCAGTAATG
CGTTACTTTTGCCCACAGTAATCGCTTTTTTCGCTGTTCTTGGGGCTAGA
ATGCTGGTGAGGTTTGCTCTTTATGTGGAGGGGCCGCTTGCGTTGGAAAT
GATTTTGAAGGACCGATTTGCTCTGAAATGTTGCGATTCCATGCTTCAAC
TGGAACAAATTGTATGCTACGGGTCTGATTCTGATTCTTCTGGTGCGATG
GAGAGTGTATCATCGATTCACACTGAAGGGGATGAATCATCTTTGGAGTC
GAATAAATGA

Coding sequence (CDS) from alignment at NODE_427_length_25918_cov_4.599721:23911..25470+

>Gcaud2581.t1 ID=Gcaud2581.t1|Name=Gcaud2581.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1560bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:23911..25470+ (Gracilaria caudata M_176_S67 male)
ATGATCATCATTAGCAATGATTGCTCACTACAAGCGAGAATAGGTTTCAT
AATTCGTCTGCTTCTCGAACTGAGCTTCAAATGGGGAAATCCTCAAATGC
TCACATATGCGGAAGTACGGCCCGCGACTACTTCGTACAATGAAAGGACG
AGCCCAACTCCAAACAGCACCATTTCGCCTGTTCCCACTAGCGTTTGTCA
CTGCCCTTTTCGTTCTCCTTCAGTTATGATTCGTGATGGTTACGTTACAT
ACGCTGACGCTGCAACTAGTCTAAGAAACTGGCGCCCGGAAAGCCCCTTA
CTCCATGAGCTGTTGTTTGCCGTTTCTATGACTTGCTTGGTCTACCAAGT
CACTAAACTGGTTTTAGAGATTTTCCTTGGCCAAAGGCGTCGAGGACAGA
TGCAAATCTCCGATTTCTACATATATACCGTCGTATCTTCCGTCTCTTTT
TCGTCAATCTTGCCAAGCCTGCGAACCAAGAGGCCCGTAGGGGGCAAAAG
GACTAAACGGAAAACCCCTTTGATAGATACCCAAGCGTTTCACGTATCTC
ATATCATTGCAACTTCAAAGTACATCACGCTTTTGCTCGTCGTACCAGGG
ATCCAAATTCTGGGAACCTTTCTCAGTATTGAAACAGAACGTGTATTGCA
CTTCAGCGACGTGAATTTTGGTGGAATGAGCATGGGATTAAGAGATGGGC
GATCTGACGTGAGGTTGACCGGAAATTCCGATTGCGCTGAAGCAGAATCT
CTGCTTGCAACGGACGAGACTGGGATGACTGATTTCTTTCGCTGCTACGG
CCAGTTCCCTATTGCGTTCGACAACGATAGGAACTTTGAGAACAACCAAA
CGTTTATTGCCATTCTGAGGTCAAGTCCAGTTGATATCGGAGTTACCATT
GTCGTACCAAAGAAAAGGTGGATTTCCTTTTTGACCCTGGATATGTATGA
CAGAAAGCAATCATACAAACTGAGAAACTCTTTAAGCGCCACTGATCGAG
CTCAAATCTTTGAAAGAGGGATTCAAGAAATGACGAAACCATGCTTGTCA
CCCACGGTTACAAGAGGAGTCGATATTTCATGGGTAATACCCCCTGATCT
CCCTCAGCAGGAGATTCTATCTGCGTCTGTACAATGTGGCCCATTTGACG
CCGATTTTGTCGCCGGTGTTGGAAATAGGATGTTAGACAACGTAACCTTC
GTAGAAACAGAGCGTTTTGAGATTGCTGAGAGTGCAGTTTTCCCGCCCGA
GTTCAGATCTGCTGACGACATTGTGTTCTTCCAGAGGCATCGCAGTAATG
CGTTACTTTTGCCCACAGTAATCGCTTTTTTCGCTGTTCTTGGGGCTAGA
ATGCTGGTGAGGTTTGCTCTTTATGTGGAGGGGCCGCTTGCGTTGGAAAT
GATTTTGAAGGACCGATTTGCTCTGAAATGTTGCGATTCCATGCTTCAAC
TGGAACAAATTGTATGCTACGGGTCTGATTCTGATTCTTCTGGTGCGATG
GAGAGTGTATCATCGATTCACACTGAAGGGGATGAATCATCTTTGGAGTC
GAATAAATGA