Gcaud2579.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2579.t1
Unique Name	Gcaud2579.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	351

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_427_length_25918_cov_4.599721	contig	NODE_427_length_25918_cov_4.599721:18120..19172 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1455608.JDTH01000006_gene2547
PFAMs	Methyltransf_11,Methyltransf_23,Methyltransf_25
Max annot lvl	183963\|Halobacteria
Evalue	8.08e-38
EggNOG OGs	arCOG04526@1\|root,arCOG04526@2157\|Archaea,2XV7A@28890\|Euryarchaeota,23W0N@183963\|Halobacteria

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2579	Gcaud2579	Gracilaria caudata M_176_S67 male	gene	NODE_427_length_25918_cov_4.599721 18120..19172 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2579.t1.stop1	Gcaud2579.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_427_length_25918_cov_4.599721 18120..18122 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2579.t1.CDS1	Gcaud2579.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_427_length_25918_cov_4.599721 18120..19172 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2579.t1.exon1	Gcaud2579.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_427_length_25918_cov_4.599721 18120..19172 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2579.t1.start1	Gcaud2579.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_427_length_25918_cov_4.599721 19170..19172 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2579.t1	Gcaud2579.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_427_length_25918_cov_4.599721 18120..19172 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_427_length_25918_cov_4.599721:18120..19172-
coding sequence from alignment at NODE_427_length_25918_cov_4.599721:18120..19172-

mRNA sequence

>Gcaud2579.t1 ID=Gcaud2579.t1|Name=Gcaud2579.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=351bp
MDYARYLRAKRSVDDRAFNLNVLNEFESYVACAALQNSVHTLRVIEVGAG
VGDMFQRLLRRRTMFSATEVVHYTLLDIKPELLKSARLSIGSRLSTSDNH
LCSNHVSLHLPSPAIVGGCGVHHRGFGDEEEVENLEDLILSESITVSFVV
GNALKYLENCHARFDVIIGAAVLDLWELESATKVLLNALDIDAGVSAFYF
PINFDGTTSFYPESCEGCVYDRYVEERYHMEMGQRLVRGREIQACHTGRL
LVPVLRDQNAIITAAGSSSWMVYPNIDGKYESDERFFLSCILDFVESTLD
DSTGEEYNKESGAFLRYLQDRRGQLLNGKLCYLAHNVDVCGHLILKPNQP
*

spliced messenger RNA

>Gcaud2579.t1 ID=Gcaud2579.t1|Name=Gcaud2579.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:18120..19172- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTACGCGAGATACCTGCGAGCAAAGCGCTCCGTCGATGACCGCGC
CTTTAACTTGAACGTGTTGAATGAATTTGAAAGCTACGTTGCGTGTGCAG
CGCTGCAAAACTCCGTCCACACTCTTCGCGTCATCGAAGTGGGTGCTGGT
GTGGGAGATATGTTTCAACGTCTACTGCGAAGAAGAACGATGTTCTCGGC
GACCGAGGTAGTTCACTATACCCTTCTTGACATTAAGCCGGAACTGCTCA
AGTCTGCCCGTTTGAGTATTGGATCAAGATTATCTACAAGTGATAACCAC
CTGTGTTCCAATCATGTTTCTCTGCACTTGCCATCACCTGCCATAGTTGG
CGGCTGTGGCGTGCATCACAGAGGTTTTGGAGATGAAGAAGAAGTTGAAA
ATCTGGAAGATCTTATACTCTCGGAGAGCATAACGGTTAGTTTTGTGGTT
GGCAACGCCCTGAAATACTTGGAAAACTGCCATGCGAGATTCGACGTCAT
AATAGGCGCCGCAGTACTTGATTTGTGGGAACTTGAGTCCGCGACAAAGG
TGCTCCTCAACGCTCTTGACATCGACGCAGGTGTAAGTGCCTTTTATTTC
CCCATCAACTTTGATGGGACGACCAGCTTTTATCCTGAGTCTTGCGAAGG
ATGTGTATACGATCGCTACGTAGAGGAAAGGTACCATATGGAGATGGGAC
AGAGACTGGTGCGCGGGAGAGAGATACAAGCCTGTCATACAGGCCGATTG
TTGGTCCCAGTCCTCCGGGATCAGAATGCCATAATTACCGCCGCTGGTAG
TTCGTCATGGATGGTATACCCCAATATCGACGGCAAGTACGAATCTGATG
AAAGATTTTTCCTCAGTTGTATACTTGATTTTGTTGAATCAACATTGGAC
GATAGTACAGGTGAAGAGTACAACAAGGAGTCGGGTGCGTTTTTGAGATA
CCTTCAAGACCGAAGGGGGCAGTTGTTAAATGGCAAACTTTGCTACCTTG
CGCACAACGTCGATGTCTGCGGCCATTTGATATTGAAACCAAATCAGCCT
TAA

protein sequence of Gcaud2579.t1

>Gcaud2579.t1 ID=Gcaud2579.t1|Name=Gcaud2579.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=351bp
MDYARYLRAKRSVDDRAFNLNVLNEFESYVACAALQNSVHTLRVIEVGAG
VGDMFQRLLRRRTMFSATEVVHYTLLDIKPELLKSARLSIGSRLSTSDNH
LCSNHVSLHLPSPAIVGGCGVHHRGFGDEEEVENLEDLILSESITVSFVV
GNALKYLENCHARFDVIIGAAVLDLWELESATKVLLNALDIDAGVSAFYF
PINFDGTTSFYPESCEGCVYDRYVEERYHMEMGQRLVRGREIQACHTGRL
LVPVLRDQNAIITAAGSSSWMVYPNIDGKYESDERFFLSCILDFVESTLD
DSTGEEYNKESGAFLRYLQDRRGQLLNGKLCYLAHNVDVCGHLILKPNQP
*

mRNA from alignment at NODE_427_length_25918_cov_4.599721:18120..19172-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2579.t1 ID=Gcaud2579.t1|Name=Gcaud2579.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:18120..19172- (Gracilaria caudata M_176_S67 male)
ATGGATTACGCGAGATACCTGCGAGCAAAGCGCTCCGTCGATGACCGCGC
CTTTAACTTGAACGTGTTGAATGAATTTGAAAGCTACGTTGCGTGTGCAG
CGCTGCAAAACTCCGTCCACACTCTTCGCGTCATCGAAGTGGGTGCTGGT
GTGGGAGATATGTTTCAACGTCTACTGCGAAGAAGAACGATGTTCTCGGC
GACCGAGGTAGTTCACTATACCCTTCTTGACATTAAGCCGGAACTGCTCA
AGTCTGCCCGTTTGAGTATTGGATCAAGATTATCTACAAGTGATAACCAC
CTGTGTTCCAATCATGTTTCTCTGCACTTGCCATCACCTGCCATAGTTGG
CGGCTGTGGCGTGCATCACAGAGGTTTTGGAGATGAAGAAGAAGTTGAAA
ATCTGGAAGATCTTATACTCTCGGAGAGCATAACGGTTAGTTTTGTGGTT
GGCAACGCCCTGAAATACTTGGAAAACTGCCATGCGAGATTCGACGTCAT
AATAGGCGCCGCAGTACTTGATTTGTGGGAACTTGAGTCCGCGACAAAGG
TGCTCCTCAACGCTCTTGACATCGACGCAGGTGTAAGTGCCTTTTATTTC
CCCATCAACTTTGATGGGACGACCAGCTTTTATCCTGAGTCTTGCGAAGG
ATGTGTATACGATCGCTACGTAGAGGAAAGGTACCATATGGAGATGGGAC
AGAGACTGGTGCGCGGGAGAGAGATACAAGCCTGTCATACAGGCCGATTG
TTGGTCCCAGTCCTCCGGGATCAGAATGCCATAATTACCGCCGCTGGTAG
TTCGTCATGGATGGTATACCCCAATATCGACGGCAAGTACGAATCTGATG
AAAGATTTTTCCTCAGTTGTATACTTGATTTTGTTGAATCAACATTGGAC
GATAGTACAGGTGAAGAGTACAACAAGGAGTCGGGTGCGTTTTTGAGATA
CCTTCAAGACCGAAGGGGGCAGTTGTTAAATGGCAAACTTTGCTACCTTG
CGCACAACGTCGATGTCTGCGGCCATTTGATATTGAAACCAAATCAGCCT
TAA

Coding sequence (CDS) from alignment at NODE_427_length_25918_cov_4.599721:18120..19172-

>Gcaud2579.t1 ID=Gcaud2579.t1|Name=Gcaud2579.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1053bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:18120..19172- (Gracilaria caudata M_176_S67 male)
ATGGATTACGCGAGATACCTGCGAGCAAAGCGCTCCGTCGATGACCGCGC
CTTTAACTTGAACGTGTTGAATGAATTTGAAAGCTACGTTGCGTGTGCAG
CGCTGCAAAACTCCGTCCACACTCTTCGCGTCATCGAAGTGGGTGCTGGT
GTGGGAGATATGTTTCAACGTCTACTGCGAAGAAGAACGATGTTCTCGGC
GACCGAGGTAGTTCACTATACCCTTCTTGACATTAAGCCGGAACTGCTCA
AGTCTGCCCGTTTGAGTATTGGATCAAGATTATCTACAAGTGATAACCAC
CTGTGTTCCAATCATGTTTCTCTGCACTTGCCATCACCTGCCATAGTTGG
CGGCTGTGGCGTGCATCACAGAGGTTTTGGAGATGAAGAAGAAGTTGAAA
ATCTGGAAGATCTTATACTCTCGGAGAGCATAACGGTTAGTTTTGTGGTT
GGCAACGCCCTGAAATACTTGGAAAACTGCCATGCGAGATTCGACGTCAT
AATAGGCGCCGCAGTACTTGATTTGTGGGAACTTGAGTCCGCGACAAAGG
TGCTCCTCAACGCTCTTGACATCGACGCAGGTGTAAGTGCCTTTTATTTC
CCCATCAACTTTGATGGGACGACCAGCTTTTATCCTGAGTCTTGCGAAGG
ATGTGTATACGATCGCTACGTAGAGGAAAGGTACCATATGGAGATGGGAC
AGAGACTGGTGCGCGGGAGAGAGATACAAGCCTGTCATACAGGCCGATTG
TTGGTCCCAGTCCTCCGGGATCAGAATGCCATAATTACCGCCGCTGGTAG
TTCGTCATGGATGGTATACCCCAATATCGACGGCAAGTACGAATCTGATG
AAAGATTTTTCCTCAGTTGTATACTTGATTTTGTTGAATCAACATTGGAC
GATAGTACAGGTGAAGAGTACAACAAGGAGTCGGGTGCGTTTTTGAGATA
CCTTCAAGACCGAAGGGGGCAGTTGTTAAATGGCAAACTTTGCTACCTTG
CGCACAACGTCGATGTCTGCGGCCATTTGATATTGAAACCAAATCAGCCT
TAA