Gcaud2578.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2578.t1
Unique Name	Gcaud2578.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	316

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_427_length_25918_cov_4.599721	contig	NODE_427_length_25918_cov_4.599721:16981..18100 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2578	Gcaud2578	Gracilaria caudata M_176_S67 male	gene	NODE_427_length_25918_cov_4.599721 16981..18100 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2578.t1	Gcaud2578.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_427_length_25918_cov_4.599721 16981..18100 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2578.t1.start1	Gcaud2578.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_427_length_25918_cov_4.599721 16981..16983 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2578.t1.CDS1	Gcaud2578.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_427_length_25918_cov_4.599721 16981..17496 +
Gcaud2578.t1.CDS2	Gcaud2578.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_427_length_25918_cov_4.599721 17580..17765 +
Gcaud2578.t1.CDS3	Gcaud2578.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_427_length_25918_cov_4.599721 17855..18100 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2578.t1.exon1	Gcaud2578.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_427_length_25918_cov_4.599721 16981..17496 +
Gcaud2578.t1.exon2	Gcaud2578.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_427_length_25918_cov_4.599721 17580..17765 +
Gcaud2578.t1.exon3	Gcaud2578.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_427_length_25918_cov_4.599721 17855..18100 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2578.t1.intron1	Gcaud2578.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_427_length_25918_cov_4.599721 17497..17579 +
Gcaud2578.t1.intron2	Gcaud2578.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_427_length_25918_cov_4.599721 17766..17854 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2578.t1.stop1	Gcaud2578.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_427_length_25918_cov_4.599721 18098..18100 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_427_length_25918_cov_4.599721:16981..18100+
coding sequence from alignment at NODE_427_length_25918_cov_4.599721:16981..18100+

mRNA sequence

>Gcaud2578.t1 ID=Gcaud2578.t1|Name=Gcaud2578.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=316bp
MAPKGRAADALDNIESMLDALHDVNQLDDVCATPEPHTNVPIGSLGHQQQ
VTNEDENEVEVREAKSSGKVAAKKSTQPKVANSANHKNGPRHQKTAQKRP
RKGRARLPRSSPKPSIHKKETRAQEKGVAQVKQVRKAVCKSNGSDPSGLS
SQDKVEQQFLQGLKRMAEERLEVENRRREQWNAQIRKKMKIIMGTTETSM
RELVGSTASDISKTARSVLNMIPKGLDKQLENLEETVAEERKSLSVLKDS
MTLFSETLQNQLKDLRAQVKVNEIEHDEKIKKVTAAAKKTNQKRRDFRNT
LLKVEQVLEDNPNPK*

spliced messenger RNA

>Gcaud2578.t1 ID=Gcaud2578.t1|Name=Gcaud2578.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=948bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:16981..18100+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCAAAGGTCGTGCGGCGGACGCATTGGACAACATCGAATCAAT
GCTAGATGCCCTCCATGATGTCAATCAGCTGGATGATGTTTGTGCTACTC
CAGAACCACATACAAACGTCCCTATCGGTTCTCTCGGTCATCAGCAACAA
GTAACGAATGAAGATGAAAACGAGGTTGAAGTGCGGGAGGCAAAGTCTTC
GGGCAAAGTGGCTGCGAAGAAAAGCACACAACCGAAGGTGGCAAACAGCG
CGAACCATAAGAATGGACCCCGTCATCAGAAGACTGCGCAGAAACGGCCT
CGCAAAGGTCGGGCTCGCTTGCCACGATCTTCTCCTAAACCTTCCATTCA
TAAGAAGGAAACCAGAGCTCAGGAAAAGGGTGTCGCCCAAGTGAAGCAGG
TTCGCAAGGCCGTGTGCAAAAGTAATGGTAGTGACCCCAGTGGCCTTTCA
TCACAAGATAAGGTTGAGCAACAGTTCTTGCAAGGCCTTAAACGTATGGC
CGAGGAAAGACTAGAGGTTGAGAACCGTCGACGAGAACAATGGAATGCAC
AGATTCGAAAGAAAATGAAGATCATCATGGGAACAACGGAGACAAGCATG
CGGGAATTGGTTGGATCCACTGCAAGTGATATTTCAAAGACTGCTCGAAG
CGTGTTGAATATGATACCCAAAGGTCTCGATAAACAGTTGGAAAACCTCG
AGGAAACGGTTGCTGAAGAGAGGAAATCGCTTTCCGTCTTGAAGGATTCC
ATGACCCTGTTCTCCGAAACGCTTCAGAATCAGCTCAAGGACCTTCGAGC
ACAAGTCAAAGTGAACGAGATAGAGCATGACGAAAAGATCAAGAAGGTAA
CCGCAGCTGCTAAGAAAACCAATCAGAAACGCCGCGACTTTCGTAACACG
CTTTTGAAGGTCGAGCAAGTCCTCGAAGATAATCCCAATCCGAAATGA

protein sequence of Gcaud2578.t1

>Gcaud2578.t1 ID=Gcaud2578.t1|Name=Gcaud2578.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=316bp
MAPKGRAADALDNIESMLDALHDVNQLDDVCATPEPHTNVPIGSLGHQQQ
VTNEDENEVEVREAKSSGKVAAKKSTQPKVANSANHKNGPRHQKTAQKRP
RKGRARLPRSSPKPSIHKKETRAQEKGVAQVKQVRKAVCKSNGSDPSGLS
SQDKVEQQFLQGLKRMAEERLEVENRRREQWNAQIRKKMKIIMGTTETSM
RELVGSTASDISKTARSVLNMIPKGLDKQLENLEETVAEERKSLSVLKDS
MTLFSETLQNQLKDLRAQVKVNEIEHDEKIKKVTAAAKKTNQKRRDFRNT
LLKVEQVLEDNPNPK*

mRNA from alignment at NODE_427_length_25918_cov_4.599721:16981..18100+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2578.t1 ID=Gcaud2578.t1|Name=Gcaud2578.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1120bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:16981..18100+ (Gracilaria caudata M_176_S67 male)
ATGGCTCCCAAAGGTCGTGCGGCGGACGCATTGGACAACATCGAATCAAT
GCTAGATGCCCTCCATGATGTCAATCAGCTGGATGATGTTTGTGCTACTC
CAGAACCACATACAAACGTCCCTATCGGTTCTCTCGGTCATCAGCAACAA
GTAACGAATGAAGATGAAAACGAGGTTGAAGTGCGGGAGGCAAAGTCTTC
GGGCAAAGTGGCTGCGAAGAAAAGCACACAACCGAAGGTGGCAAACAGCG
CGAACCATAAGAATGGACCCCGTCATCAGAAGACTGCGCAGAAACGGCCT
CGCAAAGGTCGGGCTCGCTTGCCACGATCTTCTCCTAAACCTTCCATTCA
TAAGAAGGAAACCAGAGCTCAGGAAAAGGGTGTCGCCCAAGTGAAGCAGG
TTCGCAAGGCCGTGTGCAAAAGTAATGGTAGTGACCCCAGTGGCCTTTCA
TCACAAGATAAGGTTGAGCAACAGTTCTTGCAAGGCCTTAAACGTATGGC
CGAGGAAAGACTAGAGGTACGTCATTCGGTGAACGCAAAACATCGGTTCG
TTGAAGAAACACGGGCAGTCAAACAGGCTCAACGCTGACATTGGGACAGG
TTGAGAACCGTCGACGAGAACAATGGAATGCACAGATTCGAAAGAAAATG
AAGATCATCATGGGAACAACGGAGACAAGCATGCGGGAATTGGTTGGATC
CACTGCAAGTGATATTTCAAAGACTGCTCGAAGCGTGTTGAATATGATAC
CCAAAGGTCTCGATAAACAGTTGGAAAACCTCGAGGTAAGCGTCTGACCC
GTAAAGCATATGCACTCCTCTCTCAGTGTGCTTTTTCAATCTCTGACCCT
ATGGTTTGTATTCGCACACGGAAGGAAACGGTTGCTGAAGAGAGGAAATC
GCTTTCCGTCTTGAAGGATTCCATGACCCTGTTCTCCGAAACGCTTCAGA
ATCAGCTCAAGGACCTTCGAGCACAAGTCAAAGTGAACGAGATAGAGCAT
GACGAAAAGATCAAGAAGGTAACCGCAGCTGCTAAGAAAACCAATCAGAA
ACGCCGCGACTTTCGTAACACGCTTTTGAAGGTCGAGCAAGTCCTCGAAG
ATAATCCCAATCCGAAATGA

Coding sequence (CDS) from alignment at NODE_427_length_25918_cov_4.599721:16981..18100+

>Gcaud2578.t1 ID=Gcaud2578.t1|Name=Gcaud2578.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=948bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:16981..18100+ (Gracilaria caudata M_176_S67 male)
ATGGCTCCCAAAGGTCGTGCGGCGGACGCATTGGACAACATCGAATCAAT
GCTAGATGCCCTCCATGATGTCAATCAGCTGGATGATGTTTGTGCTACTC
CAGAACCACATACAAACGTCCCTATCGGTTCTCTCGGTCATCAGCAACAA
GTAACGAATGAAGATGAAAACGAGGTTGAAGTGCGGGAGGCAAAGTCTTC
GGGCAAAGTGGCTGCGAAGAAAAGCACACAACCGAAGGTGGCAAACAGCG
CGAACCATAAGAATGGACCCCGTCATCAGAAGACTGCGCAGAAACGGCCT
CGCAAAGGTCGGGCTCGCTTGCCACGATCTTCTCCTAAACCTTCCATTCA
TAAGAAGGAAACCAGAGCTCAGGAAAAGGGTGTCGCCCAAGTGAAGCAGG
TTCGCAAGGCCGTGTGCAAAAGTAATGGTAGTGACCCCAGTGGCCTTTCA
TCACAAGATAAGGTTGAGCAACAGTTCTTGCAAGGCCTTAAACGTATGGC
CGAGGAAAGACTAGAGGTTGAGAACCGTCGACGAGAACAATGGAATGCAC
AGATTCGAAAGAAAATGAAGATCATCATGGGAACAACGGAGACAAGCATG
CGGGAATTGGTTGGATCCACTGCAAGTGATATTTCAAAGACTGCTCGAAG
CGTGTTGAATATGATACCCAAAGGTCTCGATAAACAGTTGGAAAACCTCG
AGGAAACGGTTGCTGAAGAGAGGAAATCGCTTTCCGTCTTGAAGGATTCC
ATGACCCTGTTCTCCGAAACGCTTCAGAATCAGCTCAAGGACCTTCGAGC
ACAAGTCAAAGTGAACGAGATAGAGCATGACGAAAAGATCAAGAAGGTAA
CCGCAGCTGCTAAGAAAACCAATCAGAAACGCCGCGACTTTCGTAACACG
CTTTTGAAGGTCGAGCAAGTCCTCGAAGATAATCCCAATCCGAAATGA