Gcaud2573.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2573.t1
Unique Name	Gcaud2573.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	277

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1064_length_14381_cov_4.633380	contig	NODE_1064_length_14381_cov_4.633380:9493..10323 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	65071.PYU1_T013233
PFAMs	Mito_carr
Max annot lvl	121069\|Pythiales
Evalue	1.35e-54
EggNOG OGs	KOG0767@1\|root,KOG0767@2759\|Eukaryota,1MF48@121069\|Pythiales
Description	Mitochondrial Carrier (MC) Family. Source PGD
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2573	Gcaud2573	Gracilaria caudata M_176_S67 male	gene	NODE_1064_length_14381_cov_4.633380 9493..10323 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2573.t1.stop1	Gcaud2573.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1064_length_14381_cov_4.633380 9493..9495 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2573.t1.CDS1	Gcaud2573.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1064_length_14381_cov_4.633380 9493..10323 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2573.t1.exon1	Gcaud2573.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1064_length_14381_cov_4.633380 9493..10323 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2573.t1.start1	Gcaud2573.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1064_length_14381_cov_4.633380 10321..10323 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2573.t1	Gcaud2573.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1064_length_14381_cov_4.633380 9493..10323 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1064_length_14381_cov_4.633380:9493..10323-
coding sequence from alignment at NODE_1064_length_14381_cov_4.633380:9493..10323-

mRNA sequence

>Gcaud2573.t1 ID=Gcaud2573.t1|Name=Gcaud2573.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=277bp
MGIAGALASALPQGILISVDIMKSNMQASPNKYRNVQSTFRSLLATGGDR
ALTRGLVPTIIGYSIHGFVKFSMFDWFQQLYHTRFGLEQAEKREGMVRWV
SMACAEFVAVIPLSPLAMVKLKLETSAPGSWPTRFVPAVKKMCTNRAKTG
FPFRPIFMLWSRQIPLSVSQLYLFDWFRTKVSSHVGAEQRHRWELGIMML
CGFGVAIVSTPLSQPADYVLSRFSVAETQGKSAMRIIAEDGVRNALTRGF
APRYVMVGMMTAMQFCIFENVMRVVS*

spliced messenger RNA

>Gcaud2573.t1 ID=Gcaud2573.t1|Name=Gcaud2573.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=831bp|location=Sequence derived from alignment at NODE_1064_length_14381_cov_4.633380:9493..10323- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAATTGCAGGTGCTTTGGCCAGTGCCTTGCCTCAGGGAATATTGAT
CAGCGTGGACATCATGAAGAGTAACATGCAGGCATCTCCGAACAAGTACC
GAAATGTACAAAGCACATTCCGTTCTTTACTCGCCACGGGAGGTGATAGA
GCATTAACACGAGGATTGGTTCCGACAATTATCGGGTACTCTATCCACGG
GTTTGTGAAGTTTAGTATGTTTGATTGGTTTCAACAGTTGTATCACACCC
GTTTCGGTTTGGAACAAGCAGAGAAACGTGAAGGGATGGTGAGGTGGGTT
AGCATGGCATGTGCAGAGTTTGTTGCGGTGATTCCTCTTTCTCCTCTAGC
AATGGTCAAACTCAAGCTCGAGACAAGCGCTCCTGGCTCGTGGCCTACTC
GATTCGTTCCGGCCGTGAAGAAAATGTGTACAAATCGAGCCAAAACTGGC
TTCCCATTTCGCCCTATCTTTATGCTGTGGAGCAGACAAATTCCTCTTTC
TGTGAGTCAGCTGTACCTTTTCGACTGGTTTAGAACAAAGGTTTCGTCGC
ATGTAGGTGCAGAACAAAGACATCGCTGGGAGCTGGGAATTATGATGTTG
TGTGGGTTTGGAGTTGCAATCGTTTCCACCCCATTGTCTCAGCCGGCAGA
TTACGTGCTTTCAAGGTTTTCTGTAGCTGAGACTCAGGGCAAGTCTGCGA
TGAGGATCATTGCCGAAGATGGAGTGAGAAATGCGCTTACGCGTGGTTTC
GCTCCACGATATGTGATGGTGGGCATGATGACTGCTATGCAATTCTGTAT
CTTTGAGAACGTCATGCGTGTGGTATCTTAA

protein sequence of Gcaud2573.t1

>Gcaud2573.t1 ID=Gcaud2573.t1|Name=Gcaud2573.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=277bp
MGIAGALASALPQGILISVDIMKSNMQASPNKYRNVQSTFRSLLATGGDR
ALTRGLVPTIIGYSIHGFVKFSMFDWFQQLYHTRFGLEQAEKREGMVRWV
SMACAEFVAVIPLSPLAMVKLKLETSAPGSWPTRFVPAVKKMCTNRAKTG
FPFRPIFMLWSRQIPLSVSQLYLFDWFRTKVSSHVGAEQRHRWELGIMML
CGFGVAIVSTPLSQPADYVLSRFSVAETQGKSAMRIIAEDGVRNALTRGF
APRYVMVGMMTAMQFCIFENVMRVVS*

mRNA from alignment at NODE_1064_length_14381_cov_4.633380:9493..10323-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2573.t1 ID=Gcaud2573.t1|Name=Gcaud2573.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=831bp|location=Sequence derived from alignment at NODE_1064_length_14381_cov_4.633380:9493..10323- (Gracilaria caudata M_176_S67 male)
ATGGGAATTGCAGGTGCTTTGGCCAGTGCCTTGCCTCAGGGAATATTGAT
CAGCGTGGACATCATGAAGAGTAACATGCAGGCATCTCCGAACAAGTACC
GAAATGTACAAAGCACATTCCGTTCTTTACTCGCCACGGGAGGTGATAGA
GCATTAACACGAGGATTGGTTCCGACAATTATCGGGTACTCTATCCACGG
GTTTGTGAAGTTTAGTATGTTTGATTGGTTTCAACAGTTGTATCACACCC
GTTTCGGTTTGGAACAAGCAGAGAAACGTGAAGGGATGGTGAGGTGGGTT
AGCATGGCATGTGCAGAGTTTGTTGCGGTGATTCCTCTTTCTCCTCTAGC
AATGGTCAAACTCAAGCTCGAGACAAGCGCTCCTGGCTCGTGGCCTACTC
GATTCGTTCCGGCCGTGAAGAAAATGTGTACAAATCGAGCCAAAACTGGC
TTCCCATTTCGCCCTATCTTTATGCTGTGGAGCAGACAAATTCCTCTTTC
TGTGAGTCAGCTGTACCTTTTCGACTGGTTTAGAACAAAGGTTTCGTCGC
ATGTAGGTGCAGAACAAAGACATCGCTGGGAGCTGGGAATTATGATGTTG
TGTGGGTTTGGAGTTGCAATCGTTTCCACCCCATTGTCTCAGCCGGCAGA
TTACGTGCTTTCAAGGTTTTCTGTAGCTGAGACTCAGGGCAAGTCTGCGA
TGAGGATCATTGCCGAAGATGGAGTGAGAAATGCGCTTACGCGTGGTTTC
GCTCCACGATATGTGATGGTGGGCATGATGACTGCTATGCAATTCTGTAT
CTTTGAGAACGTCATGCGTGTGGTATCTTAA

Coding sequence (CDS) from alignment at NODE_1064_length_14381_cov_4.633380:9493..10323-

>Gcaud2573.t1 ID=Gcaud2573.t1|Name=Gcaud2573.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=831bp|location=Sequence derived from alignment at NODE_1064_length_14381_cov_4.633380:9493..10323- (Gracilaria caudata M_176_S67 male)
ATGGGAATTGCAGGTGCTTTGGCCAGTGCCTTGCCTCAGGGAATATTGAT
CAGCGTGGACATCATGAAGAGTAACATGCAGGCATCTCCGAACAAGTACC
GAAATGTACAAAGCACATTCCGTTCTTTACTCGCCACGGGAGGTGATAGA
GCATTAACACGAGGATTGGTTCCGACAATTATCGGGTACTCTATCCACGG
GTTTGTGAAGTTTAGTATGTTTGATTGGTTTCAACAGTTGTATCACACCC
GTTTCGGTTTGGAACAAGCAGAGAAACGTGAAGGGATGGTGAGGTGGGTT
AGCATGGCATGTGCAGAGTTTGTTGCGGTGATTCCTCTTTCTCCTCTAGC
AATGGTCAAACTCAAGCTCGAGACAAGCGCTCCTGGCTCGTGGCCTACTC
GATTCGTTCCGGCCGTGAAGAAAATGTGTACAAATCGAGCCAAAACTGGC
TTCCCATTTCGCCCTATCTTTATGCTGTGGAGCAGACAAATTCCTCTTTC
TGTGAGTCAGCTGTACCTTTTCGACTGGTTTAGAACAAAGGTTTCGTCGC
ATGTAGGTGCAGAACAAAGACATCGCTGGGAGCTGGGAATTATGATGTTG
TGTGGGTTTGGAGTTGCAATCGTTTCCACCCCATTGTCTCAGCCGGCAGA
TTACGTGCTTTCAAGGTTTTCTGTAGCTGAGACTCAGGGCAAGTCTGCGA
TGAGGATCATTGCCGAAGATGGAGTGAGAAATGCGCTTACGCGTGGTTTC
GCTCCACGATATGTGATGGTGGGCATGATGACTGCTATGCAATTCTGTAT
CTTTGAGAACGTCATGCGTGTGGTATCTTAA