Gcaud2572.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2572.t1
Unique NameGcaud2572.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length564
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1064_length_14381_cov_4.633380contigNODE_1064_length_14381_cov_4.633380:7051..9043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009033539.1
PFAMsSel1
Max annot lvl2759|Eukaryota
KEGG koko:K07126,ko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Evalue2.6e-10
EggNOG OGsCOG0790@1|root,KOG1550@2759|Eukaryota
DescriptionERAD pathway
COG categoryT
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2572Gcaud2572Gracilaria caudata M_176_S67 malegeneNODE_1064_length_14381_cov_4.633380 7051..9043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2572.t1Gcaud2572.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1064_length_14381_cov_4.633380 7051..9043 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2572.t1.stop1Gcaud2572.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1064_length_14381_cov_4.633380 7051..7053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2572.t1.CDS1Gcaud2572.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1064_length_14381_cov_4.633380 7051..7158 -
Gcaud2572.t1.CDS2Gcaud2572.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1064_length_14381_cov_4.633380 7246..7328 -
Gcaud2572.t1.CDS3Gcaud2572.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1064_length_14381_cov_4.633380 7478..7514 -
Gcaud2572.t1.CDS4Gcaud2572.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_1064_length_14381_cov_4.633380 7580..9043 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2572.t1.exon1Gcaud2572.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1064_length_14381_cov_4.633380 7051..7158 -
Gcaud2572.t1.exon2Gcaud2572.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1064_length_14381_cov_4.633380 7246..7328 -
Gcaud2572.t1.exon3Gcaud2572.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1064_length_14381_cov_4.633380 7478..7514 -
Gcaud2572.t1.exon4Gcaud2572.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_1064_length_14381_cov_4.633380 7580..9043 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2572.t1.intron1Gcaud2572.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1064_length_14381_cov_4.633380 7159..7245 -
Gcaud2572.t1.intron2Gcaud2572.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1064_length_14381_cov_4.633380 7329..7477 -
Gcaud2572.t1.intron3Gcaud2572.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_1064_length_14381_cov_4.633380 7515..7579 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2572.t1.start1Gcaud2572.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1064_length_14381_cov_4.633380 9041..9043 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2572.t1 ID=Gcaud2572.t1|Name=Gcaud2572.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=564bp
MASSAALSPTPPPRAARPRPSAKPASSSKADSLHDTVQEVVNGVVNEAAT
RAALRSEKARVQNLINDLVTRVQADSDATKSQTPSIQGVAVGDHRLRRIA
HTPLTWTQTMDSLTLNIHVPDHVRKEHICIDFDSNSIGIDIRSPHAEQPY
FALDRTFVSEIDVAGCMWGLEAASSSRKLIVEVEKAKVQWWARLFSTDNV
ADYTIVTQNDTPINAHSSQTVAQTNETTTTTPSSAKSVVPSAPQTNTPAG
KSPERNAAPEEDLKQTVESVVENMVQEATKETVTPAPNPAPQQRLQRPQR
TTTRQKVLTRADLPKLVDEYRTAFKQGGQNSVESALQLATFYHHGIGVKQ
DDAEAVKLYRYALENGALDPSAAFQLGLIYNQGAPGVEPNPEEAVRWWKL
SAGLGNPVAMFNLGVMFLNGSGCDLEPEVAQQWFERAHAINPQLKPPQLS
KAQFAERVATAAKLRRERLRRELPPEEKRRRKELALQKILVAQSTLGTWS
SRSRNTGTGLRHVNTESKDSMAQLEIVLTIVVRTRGFQVKGLFRLTRSSS
LEVFRLELHGRYR*
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spliced messenger RNA

>Gcaud2572.t1 ID=Gcaud2572.t1|Name=Gcaud2572.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1692bp|location=Sequence derived from alignment at NODE_1064_length_14381_cov_4.633380:7051..9043- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCCAGCGCCGCGCTCTCACCAACACCTCCTCCGCGCGCTGCCAG
ACCACGTCCCTCCGCAAAGCCTGCTTCTTCGTCAAAGGCCGACTCCTTGC
ATGACACTGTCCAAGAAGTTGTGAACGGTGTCGTCAACGAAGCTGCCACC
AGAGCTGCCTTGCGCTCAGAAAAGGCTAGAGTACAAAATCTTATCAACGA
CCTGGTCACTCGCGTTCAGGCCGACTCTGATGCTACCAAATCTCAGACTC
CCAGTATACAAGGGGTTGCCGTTGGAGATCATCGTCTAAGACGTATTGCG
CACACTCCGCTCACATGGACGCAAACAATGGATTCACTTACTCTCAATAT
TCACGTTCCTGATCACGTACGAAAAGAGCACATTTGCATTGACTTTGATT
CTAACTCTATTGGTATTGACATTCGTTCACCTCATGCTGAACAACCCTAC
TTCGCTCTCGACCGCACATTTGTCAGCGAAATCGATGTGGCTGGGTGCAT
GTGGGGATTGGAGGCGGCATCTTCGTCTCGAAAGCTCATCGTCGAAGTGG
AGAAAGCCAAAGTACAGTGGTGGGCAAGATTATTCTCAACCGACAACGTT
GCGGACTACACTATTGTAACACAGAACGACACACCCATCAACGCCCACAG
CTCTCAGACCGTCGCCCAAACCAATGAAACAACTACTACGACCCCGTCTT
CAGCCAAAAGCGTCGTCCCCTCTGCGCCACAAACAAATACCCCAGCTGGA
AAGTCTCCTGAACGAAACGCAGCTCCTGAAGAAGACTTGAAACAGACTGT
GGAATCAGTAGTTGAAAATATGGTTCAGGAAGCAACCAAAGAAACTGTTA
CTCCTGCACCCAACCCCGCACCACAACAGCGACTCCAGCGACCTCAGCGA
ACCACTACCCGTCAAAAAGTGCTCACCAGAGCGGATCTTCCTAAACTTGT
GGACGAGTACCGCACCGCCTTTAAACAAGGGGGACAAAACTCTGTTGAGT
CCGCTTTGCAACTAGCTACCTTCTATCACCACGGCATCGGTGTCAAGCAA
GACGACGCGGAAGCAGTAAAATTATATCGCTATGCACTGGAAAATGGTGC
TTTGGATCCTTCTGCAGCATTTCAGCTTGGTTTAATATATAACCAAGGTG
CTCCTGGAGTGGAGCCCAACCCTGAAGAGGCGGTACGCTGGTGGAAACTT
TCTGCGGGTCTGGGGAACCCAGTCGCCATGTTCAACCTTGGTGTCATGTT
TCTCAATGGATCTGGATGCGACCTTGAACCGGAAGTGGCGCAGCAATGGT
TCGAGCGAGCTCATGCGATAAACCCACAACTAAAGCCACCACAGCTTTCA
AAGGCACAGTTTGCGGAAAGAGTGGCTACTGCAGCTAAACTTAGAAGGGA
ACGATTGAGACGTGAACTACCGCCCGAGGAAAAGAGGAGACGGAAGGAAC
TCGCATTGCAGAAGATATTGGTGGCGCAATCGACTTTAGGGACGTGGTCA
AGCAGGTCACGTAATACTGGAACGGGCCTGCGTCACGTGAACACCGAATC
AAAAGACTCAATGGCGCAGCTCGAAATAGTTCTGACGATCGTAGTCAGAA
CTCGAGGTTTTCAAGTGAAAGGGCTCTTCCGACTCACGCGATCAAGTTCC
TTGGAAGTGTTCAGATTAGAACTTCACGGGCGGTATCGTTAG
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protein sequence of Gcaud2572.t1

>Gcaud2572.t1 ID=Gcaud2572.t1|Name=Gcaud2572.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=564bp
MASSAALSPTPPPRAARPRPSAKPASSSKADSLHDTVQEVVNGVVNEAAT
RAALRSEKARVQNLINDLVTRVQADSDATKSQTPSIQGVAVGDHRLRRIA
HTPLTWTQTMDSLTLNIHVPDHVRKEHICIDFDSNSIGIDIRSPHAEQPY
FALDRTFVSEIDVAGCMWGLEAASSSRKLIVEVEKAKVQWWARLFSTDNV
ADYTIVTQNDTPINAHSSQTVAQTNETTTTTPSSAKSVVPSAPQTNTPAG
KSPERNAAPEEDLKQTVESVVENMVQEATKETVTPAPNPAPQQRLQRPQR
TTTRQKVLTRADLPKLVDEYRTAFKQGGQNSVESALQLATFYHHGIGVKQ
DDAEAVKLYRYALENGALDPSAAFQLGLIYNQGAPGVEPNPEEAVRWWKL
SAGLGNPVAMFNLGVMFLNGSGCDLEPEVAQQWFERAHAINPQLKPPQLS
KAQFAERVATAAKLRRERLRRELPPEEKRRRKELALQKILVAQSTLGTWS
SRSRNTGTGLRHVNTESKDSMAQLEIVLTIVVRTRGFQVKGLFRLTRSSS
LEVFRLELHGRYR*
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mRNA from alignment at NODE_1064_length_14381_cov_4.633380:7051..9043-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2572.t1 ID=Gcaud2572.t1|Name=Gcaud2572.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1993bp|location=Sequence derived from alignment at NODE_1064_length_14381_cov_4.633380:7051..9043- (Gracilaria caudata M_176_S67 male)
ATGGCCTCCAGCGCCGCGCTCTCACCAACACCTCCTCCGCGCGCTGCCAG
ACCACGTCCCTCCGCAAAGCCTGCTTCTTCGTCAAAGGCCGACTCCTTGC
ATGACACTGTCCAAGAAGTTGTGAACGGTGTCGTCAACGAAGCTGCCACC
AGAGCTGCCTTGCGCTCAGAAAAGGCTAGAGTACAAAATCTTATCAACGA
CCTGGTCACTCGCGTTCAGGCCGACTCTGATGCTACCAAATCTCAGACTC
CCAGTATACAAGGGGTTGCCGTTGGAGATCATCGTCTAAGACGTATTGCG
CACACTCCGCTCACATGGACGCAAACAATGGATTCACTTACTCTCAATAT
TCACGTTCCTGATCACGTACGAAAAGAGCACATTTGCATTGACTTTGATT
CTAACTCTATTGGTATTGACATTCGTTCACCTCATGCTGAACAACCCTAC
TTCGCTCTCGACCGCACATTTGTCAGCGAAATCGATGTGGCTGGGTGCAT
GTGGGGATTGGAGGCGGCATCTTCGTCTCGAAAGCTCATCGTCGAAGTGG
AGAAAGCCAAAGTACAGTGGTGGGCAAGATTATTCTCAACCGACAACGTT
GCGGACTACACTATTGTAACACAGAACGACACACCCATCAACGCCCACAG
CTCTCAGACCGTCGCCCAAACCAATGAAACAACTACTACGACCCCGTCTT
CAGCCAAAAGCGTCGTCCCCTCTGCGCCACAAACAAATACCCCAGCTGGA
AAGTCTCCTGAACGAAACGCAGCTCCTGAAGAAGACTTGAAACAGACTGT
GGAATCAGTAGTTGAAAATATGGTTCAGGAAGCAACCAAAGAAACTGTTA
CTCCTGCACCCAACCCCGCACCACAACAGCGACTCCAGCGACCTCAGCGA
ACCACTACCCGTCAAAAAGTGCTCACCAGAGCGGATCTTCCTAAACTTGT
GGACGAGTACCGCACCGCCTTTAAACAAGGGGGACAAAACTCTGTTGAGT
CCGCTTTGCAACTAGCTACCTTCTATCACCACGGCATCGGTGTCAAGCAA
GACGACGCGGAAGCAGTAAAATTATATCGCTATGCACTGGAAAATGGTGC
TTTGGATCCTTCTGCAGCATTTCAGCTTGGTTTAATATATAACCAAGGTG
CTCCTGGAGTGGAGCCCAACCCTGAAGAGGCGGTACGCTGGTGGAAACTT
TCTGCGGGTCTGGGGAACCCAGTCGCCATGTTCAACCTTGGTGTCATGTT
TCTCAATGGATCTGGATGCGACCTTGAACCGGAAGTGGCGCAGCAATGGT
TCGAGCGAGCTCATGCGATAAACCCACAACTAAAGCCACCACAGCTTTCA
AAGGCACAGTTTGCGGAAAGAGTGGCTACTGCAGCTAAACTTAGAAGGGA
ACGATTGAGACGTGAACTACCGCCCGAGGAAAAGAGGAGACGGAAGGAAC
TCGCATTGCAGAAGGTAAGATTCGCAGCTTACGGCACAATGGCAGTTGCT
TGCGTTGGCGCATCACTATTTGCCTTCAGATATTGGTGGCGCAATCGACT
TTAGGGACGTGGTCAAGTACGTTCGTAAAACACATCTCAGGCCTCGATTA
GTTAGTTCATGAACATGAAGTGCTTGTCAGCTGAGAAACGTGATCGAATC
CGCTTTCAACAAAGTCAACTTCTCGTCGTTGATGTGATGCTGAGCGAACT
TGTGATGAGGACAAGGCAGGTCACGTAATACTGGAACGGGCCTGCGTCAC
GTGAACACCGAATCAAAAGACTCAATGGCGCAGCTCGAAATAGTTCTGGT
ACGTAGTTAACTTGTCCCAATCATTTTTGGCAGTCTTTATCGACGAAGCG
CGAGCATCAATATCGTTAACACTGCCACGCCGAAGACGATCGTAGTCAGA
ACTCGAGGTTTTCAAGTGAAAGGGCTCTTCCGACTCACGCGATCAAGTTC
CTTGGAAGTGTTCAGATTAGAACTTCACGGGCGGTATCGTTAG
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Coding sequence (CDS) from alignment at NODE_1064_length_14381_cov_4.633380:7051..9043-

>Gcaud2572.t1 ID=Gcaud2572.t1|Name=Gcaud2572.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1692bp|location=Sequence derived from alignment at NODE_1064_length_14381_cov_4.633380:7051..9043- (Gracilaria caudata M_176_S67 male)
ATGGCCTCCAGCGCCGCGCTCTCACCAACACCTCCTCCGCGCGCTGCCAG
ACCACGTCCCTCCGCAAAGCCTGCTTCTTCGTCAAAGGCCGACTCCTTGC
ATGACACTGTCCAAGAAGTTGTGAACGGTGTCGTCAACGAAGCTGCCACC
AGAGCTGCCTTGCGCTCAGAAAAGGCTAGAGTACAAAATCTTATCAACGA
CCTGGTCACTCGCGTTCAGGCCGACTCTGATGCTACCAAATCTCAGACTC
CCAGTATACAAGGGGTTGCCGTTGGAGATCATCGTCTAAGACGTATTGCG
CACACTCCGCTCACATGGACGCAAACAATGGATTCACTTACTCTCAATAT
TCACGTTCCTGATCACGTACGAAAAGAGCACATTTGCATTGACTTTGATT
CTAACTCTATTGGTATTGACATTCGTTCACCTCATGCTGAACAACCCTAC
TTCGCTCTCGACCGCACATTTGTCAGCGAAATCGATGTGGCTGGGTGCAT
GTGGGGATTGGAGGCGGCATCTTCGTCTCGAAAGCTCATCGTCGAAGTGG
AGAAAGCCAAAGTACAGTGGTGGGCAAGATTATTCTCAACCGACAACGTT
GCGGACTACACTATTGTAACACAGAACGACACACCCATCAACGCCCACAG
CTCTCAGACCGTCGCCCAAACCAATGAAACAACTACTACGACCCCGTCTT
CAGCCAAAAGCGTCGTCCCCTCTGCGCCACAAACAAATACCCCAGCTGGA
AAGTCTCCTGAACGAAACGCAGCTCCTGAAGAAGACTTGAAACAGACTGT
GGAATCAGTAGTTGAAAATATGGTTCAGGAAGCAACCAAAGAAACTGTTA
CTCCTGCACCCAACCCCGCACCACAACAGCGACTCCAGCGACCTCAGCGA
ACCACTACCCGTCAAAAAGTGCTCACCAGAGCGGATCTTCCTAAACTTGT
GGACGAGTACCGCACCGCCTTTAAACAAGGGGGACAAAACTCTGTTGAGT
CCGCTTTGCAACTAGCTACCTTCTATCACCACGGCATCGGTGTCAAGCAA
GACGACGCGGAAGCAGTAAAATTATATCGCTATGCACTGGAAAATGGTGC
TTTGGATCCTTCTGCAGCATTTCAGCTTGGTTTAATATATAACCAAGGTG
CTCCTGGAGTGGAGCCCAACCCTGAAGAGGCGGTACGCTGGTGGAAACTT
TCTGCGGGTCTGGGGAACCCAGTCGCCATGTTCAACCTTGGTGTCATGTT
TCTCAATGGATCTGGATGCGACCTTGAACCGGAAGTGGCGCAGCAATGGT
TCGAGCGAGCTCATGCGATAAACCCACAACTAAAGCCACCACAGCTTTCA
AAGGCACAGTTTGCGGAAAGAGTGGCTACTGCAGCTAAACTTAGAAGGGA
ACGATTGAGACGTGAACTACCGCCCGAGGAAAAGAGGAGACGGAAGGAAC
TCGCATTGCAGAAGATATTGGTGGCGCAATCGACTTTAGGGACGTGGTCA
AGCAGGTCACGTAATACTGGAACGGGCCTGCGTCACGTGAACACCGAATC
AAAAGACTCAATGGCGCAGCTCGAAATAGTTCTGACGATCGTAGTCAGAA
CTCGAGGTTTTCAAGTGAAAGGGCTCTTCCGACTCACGCGATCAAGTTCC
TTGGAAGTGTTCAGATTAGAACTTCACGGGCGGTATCGTTAG
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