Gcaud2568.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2568.t1
Unique NameGcaud2568.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_296_length_31928_cov_4.500110contigNODE_296_length_31928_cov_4.500110:27998..29437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog518766.Rmar_1666
Preferred namehemG
PFAMsAmino_oxidase
Max annot lvl976|Bacteroidetes
KEGG rclassRC00885
KEGG koko:K00231
KEGG ReactionR03222,R04178
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
Evalue2.15e-81
EggNOG OGsCOG1232@1|root,COG1232@2|Bacteria,4NH1E@976|Bacteroidetes,1FIR6@1100069|Bacteroidetes Order II. Incertae sedis
EC1.3.3.15,1.3.3.4
DescriptionCatalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2568Gcaud2568Gracilaria caudata M_176_S67 malegeneNODE_296_length_31928_cov_4.500110 27998..29437 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2568.t1.stop1Gcaud2568.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_296_length_31928_cov_4.500110 27998..28000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2568.t1.CDS1Gcaud2568.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_296_length_31928_cov_4.500110 27998..29437 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2568.t1.exon1Gcaud2568.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_296_length_31928_cov_4.500110 27998..29437 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2568.t1.start1Gcaud2568.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_296_length_31928_cov_4.500110 29435..29437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2568.t1Gcaud2568.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_296_length_31928_cov_4.500110 27998..29437 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2568.t1 ID=Gcaud2568.t1|Name=Gcaud2568.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=480bp
MTDKRKPRRVAVLGGGPAGLSAAYRLAGDKNPIQVDLYEQSTRFGGAVTT
AKGGGLIYEMGPNSMNAKYQQVADLIYERLKLSPRVLMRDAAAKYFFIVR
NGEMIPMPRSPIQFCTTKMLSWRAKFRILLEPFIPKASESNADRESVSDF
FRRRFGHEFVDYVIDPALAGIYSTQPAGLSMKHALNKVWEVERKKGSVVG
GFLRGGMKTDVDPRFQAYSAKQLLQSFSYDTGMQVLTSRLVENIQNANKR
GRLYRNVKVRSIDQDSYGAWRINGRGKYDAVISTIPVHALGTVESNVDAI
RKGFKKLASRINYAPVSVTVLGFDRSQVNSRLDGFGVLLPSKEKTKVLGV
NFTSSNYPSRAEDPSKVYLTVYLGGSRTPDIVTRPSNEIVETATEEVQHV
LGVTGKPFYSEVKNWPKGIPQYHPGYDSALNTMAQVERRAPGLVLGGNYR
GGVGLPDALLSGLKSAERVIEYLQVTMPK*
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spliced messenger RNA

>Gcaud2568.t1 ID=Gcaud2568.t1|Name=Gcaud2568.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:27998..29437- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGACAAACGGAAACCCCGTCGTGTAGCTGTACTAGGCGGAGGTCC
GGCAGGCTTGTCTGCGGCCTACCGTCTCGCAGGTGACAAGAATCCAATTC
AAGTGGATCTCTACGAGCAGTCGACAAGATTTGGAGGCGCAGTCACCACT
GCCAAGGGCGGTGGCTTAATCTATGAAATGGGGCCCAATTCCATGAACGC
CAAGTACCAGCAAGTAGCAGATCTCATTTACGAAAGGCTGAAGCTCTCCC
CTCGCGTCCTGATGCGTGATGCCGCCGCGAAGTACTTCTTCATCGTTAGA
AATGGAGAGATGATTCCTATGCCAAGGTCCCCGATTCAGTTCTGCACTAC
AAAAATGCTGTCTTGGCGGGCAAAGTTTAGAATTCTTCTTGAACCGTTCA
TACCGAAAGCCTCGGAAAGTAATGCAGATCGAGAAAGTGTCAGTGATTTC
TTTCGGCGGCGATTTGGACACGAATTTGTGGATTATGTCATCGACCCGGC
TTTAGCTGGGATCTACTCTACTCAACCAGCCGGTCTGTCCATGAAGCATG
CGCTGAACAAAGTATGGGAAGTAGAAAGGAAGAAGGGCTCCGTTGTTGGA
GGTTTTCTACGGGGCGGTATGAAGACGGATGTGGATCCACGTTTTCAAGC
GTATTCTGCTAAACAGTTACTTCAGAGCTTCAGTTATGATACTGGTATGC
AAGTTCTCACATCCAGACTGGTTGAGAATATCCAAAATGCGAACAAACGC
GGGAGGCTGTACAGGAATGTCAAGGTGCGAAGCATAGATCAAGACTCGTA
TGGAGCATGGCGTATAAACGGCCGCGGAAAGTACGATGCTGTCATTTCTA
CGATCCCAGTTCACGCTTTAGGAACCGTTGAATCCAACGTTGACGCCATA
CGCAAGGGGTTTAAGAAGCTTGCAAGCCGTATTAATTACGCCCCAGTGTC
TGTTACTGTGCTTGGATTCGACAGGAGCCAAGTAAACTCTCGTCTAGATG
GATTCGGAGTGTTATTACCTTCCAAGGAAAAAACAAAGGTGTTAGGTGTC
AACTTTACGTCATCCAACTACCCTTCGCGCGCAGAAGACCCTAGCAAGGT
ATACCTCACCGTATACCTCGGAGGCAGCAGAACGCCGGATATCGTTACAC
GCCCCTCCAATGAGATAGTAGAGACAGCAACGGAAGAAGTGCAGCATGTG
CTTGGAGTCACAGGAAAGCCGTTCTACTCTGAAGTAAAGAATTGGCCGAA
AGGTATACCTCAGTACCATCCGGGATATGACTCTGCCCTTAACACAATGG
CCCAAGTAGAAAGACGTGCTCCTGGCCTTGTGCTTGGCGGAAACTATCGG
GGCGGAGTGGGTTTGCCGGATGCCTTGTTATCTGGTCTCAAGTCTGCTGA
GCGTGTTATCGAGTATCTTCAAGTGACGATGCCCAAATGA
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protein sequence of Gcaud2568.t1

>Gcaud2568.t1 ID=Gcaud2568.t1|Name=Gcaud2568.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=480bp
MTDKRKPRRVAVLGGGPAGLSAAYRLAGDKNPIQVDLYEQSTRFGGAVTT
AKGGGLIYEMGPNSMNAKYQQVADLIYERLKLSPRVLMRDAAAKYFFIVR
NGEMIPMPRSPIQFCTTKMLSWRAKFRILLEPFIPKASESNADRESVSDF
FRRRFGHEFVDYVIDPALAGIYSTQPAGLSMKHALNKVWEVERKKGSVVG
GFLRGGMKTDVDPRFQAYSAKQLLQSFSYDTGMQVLTSRLVENIQNANKR
GRLYRNVKVRSIDQDSYGAWRINGRGKYDAVISTIPVHALGTVESNVDAI
RKGFKKLASRINYAPVSVTVLGFDRSQVNSRLDGFGVLLPSKEKTKVLGV
NFTSSNYPSRAEDPSKVYLTVYLGGSRTPDIVTRPSNEIVETATEEVQHV
LGVTGKPFYSEVKNWPKGIPQYHPGYDSALNTMAQVERRAPGLVLGGNYR
GGVGLPDALLSGLKSAERVIEYLQVTMPK*
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mRNA from alignment at NODE_296_length_31928_cov_4.500110:27998..29437-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2568.t1 ID=Gcaud2568.t1|Name=Gcaud2568.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:27998..29437- (Gracilaria caudata M_176_S67 male)
ATGACGGACAAACGGAAACCCCGTCGTGTAGCTGTACTAGGCGGAGGTCC
GGCAGGCTTGTCTGCGGCCTACCGTCTCGCAGGTGACAAGAATCCAATTC
AAGTGGATCTCTACGAGCAGTCGACAAGATTTGGAGGCGCAGTCACCACT
GCCAAGGGCGGTGGCTTAATCTATGAAATGGGGCCCAATTCCATGAACGC
CAAGTACCAGCAAGTAGCAGATCTCATTTACGAAAGGCTGAAGCTCTCCC
CTCGCGTCCTGATGCGTGATGCCGCCGCGAAGTACTTCTTCATCGTTAGA
AATGGAGAGATGATTCCTATGCCAAGGTCCCCGATTCAGTTCTGCACTAC
AAAAATGCTGTCTTGGCGGGCAAAGTTTAGAATTCTTCTTGAACCGTTCA
TACCGAAAGCCTCGGAAAGTAATGCAGATCGAGAAAGTGTCAGTGATTTC
TTTCGGCGGCGATTTGGACACGAATTTGTGGATTATGTCATCGACCCGGC
TTTAGCTGGGATCTACTCTACTCAACCAGCCGGTCTGTCCATGAAGCATG
CGCTGAACAAAGTATGGGAAGTAGAAAGGAAGAAGGGCTCCGTTGTTGGA
GGTTTTCTACGGGGCGGTATGAAGACGGATGTGGATCCACGTTTTCAAGC
GTATTCTGCTAAACAGTTACTTCAGAGCTTCAGTTATGATACTGGTATGC
AAGTTCTCACATCCAGACTGGTTGAGAATATCCAAAATGCGAACAAACGC
GGGAGGCTGTACAGGAATGTCAAGGTGCGAAGCATAGATCAAGACTCGTA
TGGAGCATGGCGTATAAACGGCCGCGGAAAGTACGATGCTGTCATTTCTA
CGATCCCAGTTCACGCTTTAGGAACCGTTGAATCCAACGTTGACGCCATA
CGCAAGGGGTTTAAGAAGCTTGCAAGCCGTATTAATTACGCCCCAGTGTC
TGTTACTGTGCTTGGATTCGACAGGAGCCAAGTAAACTCTCGTCTAGATG
GATTCGGAGTGTTATTACCTTCCAAGGAAAAAACAAAGGTGTTAGGTGTC
AACTTTACGTCATCCAACTACCCTTCGCGCGCAGAAGACCCTAGCAAGGT
ATACCTCACCGTATACCTCGGAGGCAGCAGAACGCCGGATATCGTTACAC
GCCCCTCCAATGAGATAGTAGAGACAGCAACGGAAGAAGTGCAGCATGTG
CTTGGAGTCACAGGAAAGCCGTTCTACTCTGAAGTAAAGAATTGGCCGAA
AGGTATACCTCAGTACCATCCGGGATATGACTCTGCCCTTAACACAATGG
CCCAAGTAGAAAGACGTGCTCCTGGCCTTGTGCTTGGCGGAAACTATCGG
GGCGGAGTGGGTTTGCCGGATGCCTTGTTATCTGGTCTCAAGTCTGCTGA
GCGTGTTATCGAGTATCTTCAAGTGACGATGCCCAAATGA
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Coding sequence (CDS) from alignment at NODE_296_length_31928_cov_4.500110:27998..29437-

>Gcaud2568.t1 ID=Gcaud2568.t1|Name=Gcaud2568.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1440bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:27998..29437- (Gracilaria caudata M_176_S67 male)
ATGACGGACAAACGGAAACCCCGTCGTGTAGCTGTACTAGGCGGAGGTCC
GGCAGGCTTGTCTGCGGCCTACCGTCTCGCAGGTGACAAGAATCCAATTC
AAGTGGATCTCTACGAGCAGTCGACAAGATTTGGAGGCGCAGTCACCACT
GCCAAGGGCGGTGGCTTAATCTATGAAATGGGGCCCAATTCCATGAACGC
CAAGTACCAGCAAGTAGCAGATCTCATTTACGAAAGGCTGAAGCTCTCCC
CTCGCGTCCTGATGCGTGATGCCGCCGCGAAGTACTTCTTCATCGTTAGA
AATGGAGAGATGATTCCTATGCCAAGGTCCCCGATTCAGTTCTGCACTAC
AAAAATGCTGTCTTGGCGGGCAAAGTTTAGAATTCTTCTTGAACCGTTCA
TACCGAAAGCCTCGGAAAGTAATGCAGATCGAGAAAGTGTCAGTGATTTC
TTTCGGCGGCGATTTGGACACGAATTTGTGGATTATGTCATCGACCCGGC
TTTAGCTGGGATCTACTCTACTCAACCAGCCGGTCTGTCCATGAAGCATG
CGCTGAACAAAGTATGGGAAGTAGAAAGGAAGAAGGGCTCCGTTGTTGGA
GGTTTTCTACGGGGCGGTATGAAGACGGATGTGGATCCACGTTTTCAAGC
GTATTCTGCTAAACAGTTACTTCAGAGCTTCAGTTATGATACTGGTATGC
AAGTTCTCACATCCAGACTGGTTGAGAATATCCAAAATGCGAACAAACGC
GGGAGGCTGTACAGGAATGTCAAGGTGCGAAGCATAGATCAAGACTCGTA
TGGAGCATGGCGTATAAACGGCCGCGGAAAGTACGATGCTGTCATTTCTA
CGATCCCAGTTCACGCTTTAGGAACCGTTGAATCCAACGTTGACGCCATA
CGCAAGGGGTTTAAGAAGCTTGCAAGCCGTATTAATTACGCCCCAGTGTC
TGTTACTGTGCTTGGATTCGACAGGAGCCAAGTAAACTCTCGTCTAGATG
GATTCGGAGTGTTATTACCTTCCAAGGAAAAAACAAAGGTGTTAGGTGTC
AACTTTACGTCATCCAACTACCCTTCGCGCGCAGAAGACCCTAGCAAGGT
ATACCTCACCGTATACCTCGGAGGCAGCAGAACGCCGGATATCGTTACAC
GCCCCTCCAATGAGATAGTAGAGACAGCAACGGAAGAAGTGCAGCATGTG
CTTGGAGTCACAGGAAAGCCGTTCTACTCTGAAGTAAAGAATTGGCCGAA
AGGTATACCTCAGTACCATCCGGGATATGACTCTGCCCTTAACACAATGG
CCCAAGTAGAAAGACGTGCTCCTGGCCTTGTGCTTGGCGGAAACTATCGG
GGCGGAGTGGGTTTGCCGGATGCCTTGTTATCTGGTCTCAAGTCTGCTGA
GCGTGTTATCGAGTATCTTCAAGTGACGATGCCCAAATGA
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