Gcaud2565.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2565.t1
Unique NameGcaud2565.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length302
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_296_length_31928_cov_4.500110contigNODE_296_length_31928_cov_4.500110:23238..24143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX49872
Preferred nameEXOSC4
PFAMsRNase_PH,RNase_PH_C
Max annot lvl2759|Eukaryota
KEGG koko:K05289,ko:K11600,ko:K11662,ko:K12590
KEGG Pathwayko00563,ko01100,ko03018,map00563,map01100,map03018
KEGG ModuleM00390,M00391
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000228,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000785,GO:0000790,GO:0000956,GO:0001558,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006304,GO:0006351,GO:0006353,GO:0006364,GO:0006366,GO:0006369,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008334,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017091,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022613,GO:0030307,GO:0030847,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031329,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034399,GO:0034427,GO:0034470,GO:0034472,GO:0034473,GO:0034475,GO:0034476,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0040008,GO:0042254,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045006,GO:0045111,GO:0045927,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0051607,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071031,GO:0071034,GO:0071035,GO:0071038,GO:0071039,GO:0071042,GO:0071043,GO:0071044,GO:0071046,GO:0071047,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097659,GO:0098542,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1903311,GO:1905354
Evalue4.25e-32
EggNOG OGsCOG0689@1|root,KOG1068@2759|Eukaryota
Descriptionpolyadenylation-dependent snoRNA 3'-end processing
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2565Gcaud2565Gracilaria caudata M_176_S67 malegeneNODE_296_length_31928_cov_4.500110 23238..24143 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2565.t1.start1Gcaud2565.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_296_length_31928_cov_4.500110 23238..23240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2565.t1.CDS1Gcaud2565.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_296_length_31928_cov_4.500110 23238..24143 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2565.t1.exon1Gcaud2565.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_296_length_31928_cov_4.500110 23238..24143 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2565.t1.stop1Gcaud2565.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_296_length_31928_cov_4.500110 24141..24143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2565.t1Gcaud2565.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_296_length_31928_cov_4.500110 23238..24143 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2565.t1 ID=Gcaud2565.t1|Name=Gcaud2565.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=302bp
MAHFAKYAFLNFPVKPNVSDNRRHERQPSFCNYPMLYRKRRSSACSLGES
HSEMIKSHQLKARYPTNRQHMHKLAPFHFVNLTNGIEALPQLQNMMQKEE
VRFTRIQSSHCERAAYNKILAHVDNELLFALACGRDCYVYDFGSRNKQSG
VPRALFLGLQFIKWSLAYLWFGTEAPEFVPSRVLVRGKNLVPYWQNEVMP
FKIEKNTKQKVRYFSAYARELGVRTISLHAVYGKVSEIDGRKELHVKMIR
EWLKTQERSNSWNSDIASWMTNSGFALYDPNLTIEQLTETQAWIAALSEE
R*
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spliced messenger RNA

>Gcaud2565.t1 ID=Gcaud2565.t1|Name=Gcaud2565.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=906bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:23238..24143+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCATTTCGCGAAATATGCTTTCCTCAACTTCCCTGTAAAACCGAA
TGTCTCCGATAATAGAAGACACGAGAGACAACCAAGCTTCTGCAACTACC
CGATGCTTTACCGAAAGCGAAGGTCTTCTGCTTGCAGTTTGGGCGAATCC
CACAGTGAAATGATCAAGTCGCATCAACTGAAGGCCAGGTACCCGACGAA
TCGACAACATATGCATAAACTAGCACCCTTCCATTTCGTAAACCTTACGA
ATGGAATCGAAGCTTTACCACAGCTTCAGAACATGATGCAAAAAGAAGAA
GTTCGATTTACAAGGATCCAAAGCTCGCATTGTGAAAGAGCGGCGTACAA
TAAGATTTTGGCGCACGTAGACAACGAACTGCTCTTTGCATTGGCGTGCG
GACGAGACTGCTATGTGTATGATTTTGGCAGTCGAAACAAGCAGAGTGGT
GTGCCCAGAGCTCTCTTTCTTGGGCTGCAGTTCATCAAATGGAGCCTCGC
ATATCTCTGGTTCGGAACAGAAGCGCCAGAATTTGTTCCTAGCAGGGTAC
TAGTCCGCGGCAAGAACTTGGTTCCATACTGGCAGAATGAGGTGATGCCC
TTCAAAATTGAGAAGAACACGAAACAGAAGGTCAGGTACTTTTCCGCTTA
TGCAAGAGAACTTGGCGTGAGGACCATAAGTCTGCATGCGGTGTACGGGA
AAGTGAGTGAAATAGATGGCCGCAAAGAACTACATGTTAAGATGATTCGG
GAGTGGCTCAAGACACAGGAAAGAAGTAATAGTTGGAATTCAGATATTGC
ATCTTGGATGACAAACAGCGGTTTTGCTCTTTACGATCCCAACTTAACGA
TCGAACAGCTAACGGAAACCCAGGCATGGATAGCTGCTCTCAGTGAAGAG
AGGTAA
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protein sequence of Gcaud2565.t1

>Gcaud2565.t1 ID=Gcaud2565.t1|Name=Gcaud2565.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=302bp
MAHFAKYAFLNFPVKPNVSDNRRHERQPSFCNYPMLYRKRRSSACSLGES
HSEMIKSHQLKARYPTNRQHMHKLAPFHFVNLTNGIEALPQLQNMMQKEE
VRFTRIQSSHCERAAYNKILAHVDNELLFALACGRDCYVYDFGSRNKQSG
VPRALFLGLQFIKWSLAYLWFGTEAPEFVPSRVLVRGKNLVPYWQNEVMP
FKIEKNTKQKVRYFSAYARELGVRTISLHAVYGKVSEIDGRKELHVKMIR
EWLKTQERSNSWNSDIASWMTNSGFALYDPNLTIEQLTETQAWIAALSEE
R*
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mRNA from alignment at NODE_296_length_31928_cov_4.500110:23238..24143+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2565.t1 ID=Gcaud2565.t1|Name=Gcaud2565.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=906bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:23238..24143+ (Gracilaria caudata M_176_S67 male)
ATGGCTCATTTCGCGAAATATGCTTTCCTCAACTTCCCTGTAAAACCGAA
TGTCTCCGATAATAGAAGACACGAGAGACAACCAAGCTTCTGCAACTACC
CGATGCTTTACCGAAAGCGAAGGTCTTCTGCTTGCAGTTTGGGCGAATCC
CACAGTGAAATGATCAAGTCGCATCAACTGAAGGCCAGGTACCCGACGAA
TCGACAACATATGCATAAACTAGCACCCTTCCATTTCGTAAACCTTACGA
ATGGAATCGAAGCTTTACCACAGCTTCAGAACATGATGCAAAAAGAAGAA
GTTCGATTTACAAGGATCCAAAGCTCGCATTGTGAAAGAGCGGCGTACAA
TAAGATTTTGGCGCACGTAGACAACGAACTGCTCTTTGCATTGGCGTGCG
GACGAGACTGCTATGTGTATGATTTTGGCAGTCGAAACAAGCAGAGTGGT
GTGCCCAGAGCTCTCTTTCTTGGGCTGCAGTTCATCAAATGGAGCCTCGC
ATATCTCTGGTTCGGAACAGAAGCGCCAGAATTTGTTCCTAGCAGGGTAC
TAGTCCGCGGCAAGAACTTGGTTCCATACTGGCAGAATGAGGTGATGCCC
TTCAAAATTGAGAAGAACACGAAACAGAAGGTCAGGTACTTTTCCGCTTA
TGCAAGAGAACTTGGCGTGAGGACCATAAGTCTGCATGCGGTGTACGGGA
AAGTGAGTGAAATAGATGGCCGCAAAGAACTACATGTTAAGATGATTCGG
GAGTGGCTCAAGACACAGGAAAGAAGTAATAGTTGGAATTCAGATATTGC
ATCTTGGATGACAAACAGCGGTTTTGCTCTTTACGATCCCAACTTAACGA
TCGAACAGCTAACGGAAACCCAGGCATGGATAGCTGCTCTCAGTGAAGAG
AGGTAA
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Coding sequence (CDS) from alignment at NODE_296_length_31928_cov_4.500110:23238..24143+

>Gcaud2565.t1 ID=Gcaud2565.t1|Name=Gcaud2565.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=906bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:23238..24143+ (Gracilaria caudata M_176_S67 male)
ATGGCTCATTTCGCGAAATATGCTTTCCTCAACTTCCCTGTAAAACCGAA
TGTCTCCGATAATAGAAGACACGAGAGACAACCAAGCTTCTGCAACTACC
CGATGCTTTACCGAAAGCGAAGGTCTTCTGCTTGCAGTTTGGGCGAATCC
CACAGTGAAATGATCAAGTCGCATCAACTGAAGGCCAGGTACCCGACGAA
TCGACAACATATGCATAAACTAGCACCCTTCCATTTCGTAAACCTTACGA
ATGGAATCGAAGCTTTACCACAGCTTCAGAACATGATGCAAAAAGAAGAA
GTTCGATTTACAAGGATCCAAAGCTCGCATTGTGAAAGAGCGGCGTACAA
TAAGATTTTGGCGCACGTAGACAACGAACTGCTCTTTGCATTGGCGTGCG
GACGAGACTGCTATGTGTATGATTTTGGCAGTCGAAACAAGCAGAGTGGT
GTGCCCAGAGCTCTCTTTCTTGGGCTGCAGTTCATCAAATGGAGCCTCGC
ATATCTCTGGTTCGGAACAGAAGCGCCAGAATTTGTTCCTAGCAGGGTAC
TAGTCCGCGGCAAGAACTTGGTTCCATACTGGCAGAATGAGGTGATGCCC
TTCAAAATTGAGAAGAACACGAAACAGAAGGTCAGGTACTTTTCCGCTTA
TGCAAGAGAACTTGGCGTGAGGACCATAAGTCTGCATGCGGTGTACGGGA
AAGTGAGTGAAATAGATGGCCGCAAAGAACTACATGTTAAGATGATTCGG
GAGTGGCTCAAGACACAGGAAAGAAGTAATAGTTGGAATTCAGATATTGC
ATCTTGGATGACAAACAGCGGTTTTGCTCTTTACGATCCCAACTTAACGA
TCGAACAGCTAACGGAAACCCAGGCATGGATAGCTGCTCTCAGTGAAGAG
AGGTAA
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