Gcaud2561.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2561.t1
Unique NameGcaud2561.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length81
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_296_length_31928_cov_4.500110contigNODE_296_length_31928_cov_4.500110:10838..11232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2561Gcaud2561Gracilaria caudata M_176_S67 malegeneNODE_296_length_31928_cov_4.500110 10838..11232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2561.t1Gcaud2561.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_296_length_31928_cov_4.500110 10838..11232 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2561.t1.start1Gcaud2561.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_296_length_31928_cov_4.500110 10838..10840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2561.t1.CDS1Gcaud2561.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_296_length_31928_cov_4.500110 10838..10975 +
Gcaud2561.t1.CDS2Gcaud2561.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_296_length_31928_cov_4.500110 11128..11232 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2561.t1.exon1Gcaud2561.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_296_length_31928_cov_4.500110 10838..10975 +
Gcaud2561.t1.exon2Gcaud2561.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_296_length_31928_cov_4.500110 11128..11232 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2561.t1.intron1Gcaud2561.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_296_length_31928_cov_4.500110 10976..11127 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2561.t1.stop1Gcaud2561.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_296_length_31928_cov_4.500110 11230..11232 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2561.t1 ID=Gcaud2561.t1|Name=Gcaud2561.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=81bp
MALPSKIGAFMVGLAIGSANCFYWLHKDVRNVNDAMMRKIDSIRHQIEEK
DRKAALQLAALESAVTGLSTPIGDDGTLPS*
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spliced messenger RNA

>Gcaud2561.t1 ID=Gcaud2561.t1|Name=Gcaud2561.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=243bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:10838..11232+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTTCCGTCGAAGATTGGGGCTTTCATGGTTGGACTCGCAATTGG
GAGTGCAAACTGTTTTTATTGGCTCCATAAAGATGTTAGAAACGTCAATG
ACGCGATGATGCGAAAGATTGATTCGATCCGGCATCAGATAGAAGAGAAG
GACAGAAAAGCGGCTCTGCAGCTTGCTGCCCTTGAGTCCGCCGTAACTGG
ACTTTCAACACCGATAGGCGACGATGGAACTCTACCCTCCTGA
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protein sequence of Gcaud2561.t1

>Gcaud2561.t1 ID=Gcaud2561.t1|Name=Gcaud2561.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=81bp
MALPSKIGAFMVGLAIGSANCFYWLHKDVRNVNDAMMRKIDSIRHQIEEK
DRKAALQLAALESAVTGLSTPIGDDGTLPS*
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mRNA from alignment at NODE_296_length_31928_cov_4.500110:10838..11232+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2561.t1 ID=Gcaud2561.t1|Name=Gcaud2561.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=395bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:10838..11232+ (Gracilaria caudata M_176_S67 male)
ATGGCTCTTCCGTCGAAGATTGGGGCTTTCATGGTTGGACTCGCAATTGG
GAGTGCAAACTGTTTTTATTGGCTCCATAAAGATGTTAGAAACGTCAATG
ACGCGATGATGCGAAAGATTGATTCGATCCGGCATCAGGTATGTGTTTGC
CAAATATCACTGTGATTCTGTTGGTCACACACGTCTGGCTATGATTTTTA
AAGTCCAGTGTCGCACACAGTCTTTCTCAATGAAAGATCACACCAGACTG
CGAGGAACTAACCGTTTTTCCCATTGCTTGTCTGACACAGATAGAAGAGA
AGGACAGAAAAGCGGCTCTGCAGCTTGCTGCCCTTGAGTCCGCCGTAACT
GGACTTTCAACACCGATAGGCGACGATGGAACTCTACCCTCCTGA
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Coding sequence (CDS) from alignment at NODE_296_length_31928_cov_4.500110:10838..11232+

>Gcaud2561.t1 ID=Gcaud2561.t1|Name=Gcaud2561.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=243bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:10838..11232+ (Gracilaria caudata M_176_S67 male)
ATGGCTCTTCCGTCGAAGATTGGGGCTTTCATGGTTGGACTCGCAATTGG
GAGTGCAAACTGTTTTTATTGGCTCCATAAAGATGTTAGAAACGTCAATG
ACGCGATGATGCGAAAGATTGATTCGATCCGGCATCAGATAGAAGAGAAG
GACAGAAAAGCGGCTCTGCAGCTTGCTGCCCTTGAGTCCGCCGTAACTGG
ACTTTCAACACCGATAGGCGACGATGGAACTCTACCCTCCTGA
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