Gcaud2560.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2560.t1
Unique Name	Gcaud2560.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	568

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_296_length_31928_cov_4.500110	contig	NODE_296_length_31928_cov_4.500110:8309..10012 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2560	Gcaud2560	Gracilaria caudata M_176_S67 male	gene	NODE_296_length_31928_cov_4.500110 8309..10012 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2560.t1.stop1	Gcaud2560.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_296_length_31928_cov_4.500110 8309..8311 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2560.t1.CDS1	Gcaud2560.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_296_length_31928_cov_4.500110 8309..10012 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2560.t1.exon1	Gcaud2560.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_296_length_31928_cov_4.500110 8309..10012 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2560.t1.start1	Gcaud2560.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_296_length_31928_cov_4.500110 10010..10012 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2560.t1	Gcaud2560.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_296_length_31928_cov_4.500110 8309..10012 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_296_length_31928_cov_4.500110:8309..10012-
coding sequence from alignment at NODE_296_length_31928_cov_4.500110:8309..10012-

mRNA sequence

>Gcaud2560.t1 ID=Gcaud2560.t1|Name=Gcaud2560.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=568bp
MSDNSNPACDSKLIKEKKHMPIRANSLPLVLFGLLFALSSVVSVAAKAYK
LTNSTVENRGVVRVANSNGKDADWSRLYPSKIRKVPDAWNRYTYPWYVPH
RVRFLTLEESRYRVLYSPVRPAASDGLGHNSAVMNAEIGVALRLGLSYSH
RVSSHGSLTRDNHNAVEEFFGWGHGQIPREFIRESFCKSSLNISHKTCHV
CEGLKMNKTFPEMNFKHLIELPYNLTYGRMRCLRSGNLVLKNACKEQQQS
FLKRNNMSHTIFQMPLLTCATNPADSHFDPTTRAYLFHSYWDQHGLMNPQ
RRTNNTARSSIVQRYNIPILHLSGTSKPIEFPEHALNIAIHARRGDFFKE
TTRNMVSTATFGRVVREFMAIVQERGGIFARMPVIVHLYSEGAPKEKNRF
QGHDISRMTQLYMDSDGSIRDAGWVTQTIRAFGSAEVARHRSTDSSLKAS
SSKPRRLLLFPGGLRVKLHIAADTLQSMREMISADVFIGSESGMSMHIVS
TMSRGLYFLPTRLVSHEFECCQVTFDPRSGVLANPESVKAFWDAFAGANE
ASATRAFLANKVHNIRR*

spliced messenger RNA

>Gcaud2560.t1 ID=Gcaud2560.t1|Name=Gcaud2560.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1704bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:8309..10012- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGACAACAGCAATCCCGCCTGTGACTCCAAGCTCATCAAAGAAAA
GAAGCATATGCCGATAAGGGCAAACAGCTTGCCACTGGTGCTCTTTGGCT
TACTTTTCGCTCTTTCTTCGGTTGTATCAGTGGCCGCCAAAGCGTACAAG
CTCACGAATAGCACAGTGGAGAATCGTGGAGTCGTTCGAGTGGCGAACTC
TAACGGAAAAGATGCCGACTGGTCACGTCTCTACCCTTCCAAAATAAGAA
AGGTACCAGATGCCTGGAATCGATATACTTATCCGTGGTACGTCCCCCAC
CGAGTCCGGTTTTTAACTCTGGAGGAATCAAGATATCGAGTTTTATATTC
TCCTGTTCGCCCTGCGGCCAGCGATGGTCTGGGTCACAATTCCGCGGTGA
TGAACGCAGAAATTGGTGTGGCATTGCGACTCGGCTTGTCATATTCTCAT
CGTGTCTCTTCGCACGGTAGCTTGACTAGAGACAATCATAATGCTGTTGA
AGAATTCTTTGGTTGGGGTCATGGTCAGATTCCTAGGGAGTTCATACGCG
AGTCCTTCTGCAAGTCGTCGTTGAACATATCCCACAAAACTTGTCATGTT
TGTGAGGGGCTGAAGATGAACAAAACCTTCCCGGAAATGAATTTCAAACA
CCTCATAGAGCTTCCATACAACCTAACATACGGTAGGATGAGGTGCCTAC
GTTCAGGGAATCTTGTACTGAAGAATGCTTGCAAAGAGCAGCAACAGTCG
TTTTTGAAACGTAATAACATGTCACATACCATTTTCCAAATGCCCCTTCT
CACATGTGCTACAAATCCAGCAGACTCTCACTTTGATCCGACAACGAGAG
CTTACCTGTTTCACAGTTACTGGGATCAACACGGTCTCATGAATCCCCAA
AGGCGTACGAACAACACAGCGAGGAGTAGTATTGTTCAAAGATACAATAT
TCCAATCCTTCACCTGTCGGGCACATCGAAGCCCATTGAATTCCCAGAAC
ACGCTCTCAACATTGCTATTCATGCACGGCGAGGAGATTTCTTTAAGGAA
ACAACGCGCAACATGGTTTCCACAGCAACTTTTGGACGCGTTGTGAGAGA
ATTTATGGCCATTGTTCAAGAACGAGGCGGCATTTTCGCCCGTATGCCAG
TCATTGTTCACCTGTACTCTGAAGGAGCTCCAAAGGAGAAGAACCGGTTT
CAGGGGCACGACATATCACGTATGACACAACTGTACATGGATTCGGATGG
AAGCATACGTGATGCAGGCTGGGTGACACAAACTATACGAGCATTCGGTT
CGGCCGAAGTTGCAAGGCACAGATCTACCGACTCTTCTCTGAAGGCGAGC
TCAAGCAAACCAAGACGTTTACTTTTGTTCCCAGGTGGGCTAAGAGTTAA
GCTGCATATCGCAGCTGATACTCTCCAATCGATGCGAGAGATGATTTCTG
CCGATGTATTCATTGGCAGCGAATCTGGGATGAGCATGCACATTGTATCC
ACAATGTCCCGAGGACTCTATTTCCTGCCTACACGATTGGTATCGCATGA
ATTCGAATGCTGCCAAGTTACTTTTGACCCCCGAAGTGGAGTTCTGGCTA
ATCCAGAAAGTGTGAAGGCGTTCTGGGATGCATTCGCTGGAGCAAATGAG
GCATCGGCAACTCGTGCCTTTTTGGCAAACAAGGTCCATAACATACGGCG
TTAG

protein sequence of Gcaud2560.t1

>Gcaud2560.t1 ID=Gcaud2560.t1|Name=Gcaud2560.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=568bp
MSDNSNPACDSKLIKEKKHMPIRANSLPLVLFGLLFALSSVVSVAAKAYK
LTNSTVENRGVVRVANSNGKDADWSRLYPSKIRKVPDAWNRYTYPWYVPH
RVRFLTLEESRYRVLYSPVRPAASDGLGHNSAVMNAEIGVALRLGLSYSH
RVSSHGSLTRDNHNAVEEFFGWGHGQIPREFIRESFCKSSLNISHKTCHV
CEGLKMNKTFPEMNFKHLIELPYNLTYGRMRCLRSGNLVLKNACKEQQQS
FLKRNNMSHTIFQMPLLTCATNPADSHFDPTTRAYLFHSYWDQHGLMNPQ
RRTNNTARSSIVQRYNIPILHLSGTSKPIEFPEHALNIAIHARRGDFFKE
TTRNMVSTATFGRVVREFMAIVQERGGIFARMPVIVHLYSEGAPKEKNRF
QGHDISRMTQLYMDSDGSIRDAGWVTQTIRAFGSAEVARHRSTDSSLKAS
SSKPRRLLLFPGGLRVKLHIAADTLQSMREMISADVFIGSESGMSMHIVS
TMSRGLYFLPTRLVSHEFECCQVTFDPRSGVLANPESVKAFWDAFAGANE
ASATRAFLANKVHNIRR*

mRNA from alignment at NODE_296_length_31928_cov_4.500110:8309..10012-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2560.t1 ID=Gcaud2560.t1|Name=Gcaud2560.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1704bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:8309..10012- (Gracilaria caudata M_176_S67 male)
ATGTCTGACAACAGCAATCCCGCCTGTGACTCCAAGCTCATCAAAGAAAA
GAAGCATATGCCGATAAGGGCAAACAGCTTGCCACTGGTGCTCTTTGGCT
TACTTTTCGCTCTTTCTTCGGTTGTATCAGTGGCCGCCAAAGCGTACAAG
CTCACGAATAGCACAGTGGAGAATCGTGGAGTCGTTCGAGTGGCGAACTC
TAACGGAAAAGATGCCGACTGGTCACGTCTCTACCCTTCCAAAATAAGAA
AGGTACCAGATGCCTGGAATCGATATACTTATCCGTGGTACGTCCCCCAC
CGAGTCCGGTTTTTAACTCTGGAGGAATCAAGATATCGAGTTTTATATTC
TCCTGTTCGCCCTGCGGCCAGCGATGGTCTGGGTCACAATTCCGCGGTGA
TGAACGCAGAAATTGGTGTGGCATTGCGACTCGGCTTGTCATATTCTCAT
CGTGTCTCTTCGCACGGTAGCTTGACTAGAGACAATCATAATGCTGTTGA
AGAATTCTTTGGTTGGGGTCATGGTCAGATTCCTAGGGAGTTCATACGCG
AGTCCTTCTGCAAGTCGTCGTTGAACATATCCCACAAAACTTGTCATGTT
TGTGAGGGGCTGAAGATGAACAAAACCTTCCCGGAAATGAATTTCAAACA
CCTCATAGAGCTTCCATACAACCTAACATACGGTAGGATGAGGTGCCTAC
GTTCAGGGAATCTTGTACTGAAGAATGCTTGCAAAGAGCAGCAACAGTCG
TTTTTGAAACGTAATAACATGTCACATACCATTTTCCAAATGCCCCTTCT
CACATGTGCTACAAATCCAGCAGACTCTCACTTTGATCCGACAACGAGAG
CTTACCTGTTTCACAGTTACTGGGATCAACACGGTCTCATGAATCCCCAA
AGGCGTACGAACAACACAGCGAGGAGTAGTATTGTTCAAAGATACAATAT
TCCAATCCTTCACCTGTCGGGCACATCGAAGCCCATTGAATTCCCAGAAC
ACGCTCTCAACATTGCTATTCATGCACGGCGAGGAGATTTCTTTAAGGAA
ACAACGCGCAACATGGTTTCCACAGCAACTTTTGGACGCGTTGTGAGAGA
ATTTATGGCCATTGTTCAAGAACGAGGCGGCATTTTCGCCCGTATGCCAG
TCATTGTTCACCTGTACTCTGAAGGAGCTCCAAAGGAGAAGAACCGGTTT
CAGGGGCACGACATATCACGTATGACACAACTGTACATGGATTCGGATGG
AAGCATACGTGATGCAGGCTGGGTGACACAAACTATACGAGCATTCGGTT
CGGCCGAAGTTGCAAGGCACAGATCTACCGACTCTTCTCTGAAGGCGAGC
TCAAGCAAACCAAGACGTTTACTTTTGTTCCCAGGTGGGCTAAGAGTTAA
GCTGCATATCGCAGCTGATACTCTCCAATCGATGCGAGAGATGATTTCTG
CCGATGTATTCATTGGCAGCGAATCTGGGATGAGCATGCACATTGTATCC
ACAATGTCCCGAGGACTCTATTTCCTGCCTACACGATTGGTATCGCATGA
ATTCGAATGCTGCCAAGTTACTTTTGACCCCCGAAGTGGAGTTCTGGCTA
ATCCAGAAAGTGTGAAGGCGTTCTGGGATGCATTCGCTGGAGCAAATGAG
GCATCGGCAACTCGTGCCTTTTTGGCAAACAAGGTCCATAACATACGGCG
TTAG

Coding sequence (CDS) from alignment at NODE_296_length_31928_cov_4.500110:8309..10012-

>Gcaud2560.t1 ID=Gcaud2560.t1|Name=Gcaud2560.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1704bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:8309..10012- (Gracilaria caudata M_176_S67 male)
ATGTCTGACAACAGCAATCCCGCCTGTGACTCCAAGCTCATCAAAGAAAA
GAAGCATATGCCGATAAGGGCAAACAGCTTGCCACTGGTGCTCTTTGGCT
TACTTTTCGCTCTTTCTTCGGTTGTATCAGTGGCCGCCAAAGCGTACAAG
CTCACGAATAGCACAGTGGAGAATCGTGGAGTCGTTCGAGTGGCGAACTC
TAACGGAAAAGATGCCGACTGGTCACGTCTCTACCCTTCCAAAATAAGAA
AGGTACCAGATGCCTGGAATCGATATACTTATCCGTGGTACGTCCCCCAC
CGAGTCCGGTTTTTAACTCTGGAGGAATCAAGATATCGAGTTTTATATTC
TCCTGTTCGCCCTGCGGCCAGCGATGGTCTGGGTCACAATTCCGCGGTGA
TGAACGCAGAAATTGGTGTGGCATTGCGACTCGGCTTGTCATATTCTCAT
CGTGTCTCTTCGCACGGTAGCTTGACTAGAGACAATCATAATGCTGTTGA
AGAATTCTTTGGTTGGGGTCATGGTCAGATTCCTAGGGAGTTCATACGCG
AGTCCTTCTGCAAGTCGTCGTTGAACATATCCCACAAAACTTGTCATGTT
TGTGAGGGGCTGAAGATGAACAAAACCTTCCCGGAAATGAATTTCAAACA
CCTCATAGAGCTTCCATACAACCTAACATACGGTAGGATGAGGTGCCTAC
GTTCAGGGAATCTTGTACTGAAGAATGCTTGCAAAGAGCAGCAACAGTCG
TTTTTGAAACGTAATAACATGTCACATACCATTTTCCAAATGCCCCTTCT
CACATGTGCTACAAATCCAGCAGACTCTCACTTTGATCCGACAACGAGAG
CTTACCTGTTTCACAGTTACTGGGATCAACACGGTCTCATGAATCCCCAA
AGGCGTACGAACAACACAGCGAGGAGTAGTATTGTTCAAAGATACAATAT
TCCAATCCTTCACCTGTCGGGCACATCGAAGCCCATTGAATTCCCAGAAC
ACGCTCTCAACATTGCTATTCATGCACGGCGAGGAGATTTCTTTAAGGAA
ACAACGCGCAACATGGTTTCCACAGCAACTTTTGGACGCGTTGTGAGAGA
ATTTATGGCCATTGTTCAAGAACGAGGCGGCATTTTCGCCCGTATGCCAG
TCATTGTTCACCTGTACTCTGAAGGAGCTCCAAAGGAGAAGAACCGGTTT
CAGGGGCACGACATATCACGTATGACACAACTGTACATGGATTCGGATGG
AAGCATACGTGATGCAGGCTGGGTGACACAAACTATACGAGCATTCGGTT
CGGCCGAAGTTGCAAGGCACAGATCTACCGACTCTTCTCTGAAGGCGAGC
TCAAGCAAACCAAGACGTTTACTTTTGTTCCCAGGTGGGCTAAGAGTTAA
GCTGCATATCGCAGCTGATACTCTCCAATCGATGCGAGAGATGATTTCTG
CCGATGTATTCATTGGCAGCGAATCTGGGATGAGCATGCACATTGTATCC
ACAATGTCCCGAGGACTCTATTTCCTGCCTACACGATTGGTATCGCATGA
ATTCGAATGCTGCCAAGTTACTTTTGACCCCCGAAGTGGAGTTCTGGCTA
ATCCAGAAAGTGTGAAGGCGTTCTGGGATGCATTCGCTGGAGCAAATGAG
GCATCGGCAACTCGTGCCTTTTTGGCAAACAAGGTCCATAACATACGGCG
TTAG