Gcaud2558.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2558.t1
Unique NameGcaud2558.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length204
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_296_length_31928_cov_4.500110contigNODE_296_length_31928_cov_4.500110:5367..5978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123393.KB891316_gene1541
Preferred nametag
PFAMsAdenine_glyco
Max annot lvl28216|Betaproteobacteria
KEGG koko:K01246
KEGG Pathwayko03410,map03410
Evalue9.69e-68
EggNOG OGsCOG2818@1|root,COG2818@2|Bacteria,1R9X5@1224|Proteobacteria,2VQC5@28216|Betaproteobacteria
EC3.2.2.20
Descriptionglycosylase
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2558Gcaud2558Gracilaria caudata M_176_S67 malegeneNODE_296_length_31928_cov_4.500110 5367..5978 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2558.t1.stop1Gcaud2558.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_296_length_31928_cov_4.500110 5367..5369 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2558.t1.CDS1Gcaud2558.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_296_length_31928_cov_4.500110 5367..5978 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2558.t1.exon1Gcaud2558.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_296_length_31928_cov_4.500110 5367..5978 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2558.t1.start1Gcaud2558.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_296_length_31928_cov_4.500110 5976..5978 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2558.t1Gcaud2558.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_296_length_31928_cov_4.500110 5367..5978 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2558.t1 ID=Gcaud2558.t1|Name=Gcaud2558.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=204bp
MAPAPKRQKKDTRCEWCLSAPDYIQYHDEEWGVPLYDDKKVFEFLLLESF
QAGLSWLTVLRKREAFANAFHDFDVDRIAAMTDKDVERLQNDASIIRHKL
KIRAAINNAKAVITMREDGIDLAHYFWDWVDYVPQHNCKSGRWISKNELS
DEIAKDLKKRGFKFVGSTIIYAHLQATGVINDHNPSCPRYKQVQKLVKKK
PKQ*
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spliced messenger RNA

>Gcaud2558.t1 ID=Gcaud2558.t1|Name=Gcaud2558.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=612bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:5367..5978- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCGCGCCGAAGCGACAGAAGAAGGACACTCGTTGTGAATGGTG
TTTATCGGCCCCGGACTACATTCAGTATCACGACGAAGAATGGGGCGTTC
CACTGTACGATGACAAAAAGGTGTTCGAGTTTCTGTTGCTAGAGAGCTTC
CAGGCTGGACTCAGTTGGCTCACTGTTCTTCGAAAACGAGAAGCTTTTGC
GAATGCGTTCCACGACTTTGATGTTGATCGAATCGCAGCTATGACCGATA
AGGACGTCGAGCGACTACAAAATGATGCCTCCATCATTCGACATAAATTG
AAGATTCGAGCTGCCATAAACAACGCAAAAGCTGTGATCACTATGAGAGA
GGATGGTATTGACCTTGCGCACTATTTTTGGGACTGGGTAGACTATGTGC
CTCAACACAACTGCAAGAGTGGTCGGTGGATTTCGAAGAATGAGCTCTCA
GATGAAATCGCCAAGGATTTGAAGAAACGAGGTTTCAAGTTCGTTGGCAG
CACTATTATATATGCTCATTTGCAGGCTACGGGCGTAATCAACGATCATA
ATCCAAGCTGTCCGCGGTATAAACAGGTTCAAAAGTTAGTCAAGAAGAAA
CCGAAGCAATGA
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protein sequence of Gcaud2558.t1

>Gcaud2558.t1 ID=Gcaud2558.t1|Name=Gcaud2558.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=204bp
MAPAPKRQKKDTRCEWCLSAPDYIQYHDEEWGVPLYDDKKVFEFLLLESF
QAGLSWLTVLRKREAFANAFHDFDVDRIAAMTDKDVERLQNDASIIRHKL
KIRAAINNAKAVITMREDGIDLAHYFWDWVDYVPQHNCKSGRWISKNELS
DEIAKDLKKRGFKFVGSTIIYAHLQATGVINDHNPSCPRYKQVQKLVKKK
PKQ*
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mRNA from alignment at NODE_296_length_31928_cov_4.500110:5367..5978-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2558.t1 ID=Gcaud2558.t1|Name=Gcaud2558.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=612bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:5367..5978- (Gracilaria caudata M_176_S67 male)
ATGGCTCCCGCGCCGAAGCGACAGAAGAAGGACACTCGTTGTGAATGGTG
TTTATCGGCCCCGGACTACATTCAGTATCACGACGAAGAATGGGGCGTTC
CACTGTACGATGACAAAAAGGTGTTCGAGTTTCTGTTGCTAGAGAGCTTC
CAGGCTGGACTCAGTTGGCTCACTGTTCTTCGAAAACGAGAAGCTTTTGC
GAATGCGTTCCACGACTTTGATGTTGATCGAATCGCAGCTATGACCGATA
AGGACGTCGAGCGACTACAAAATGATGCCTCCATCATTCGACATAAATTG
AAGATTCGAGCTGCCATAAACAACGCAAAAGCTGTGATCACTATGAGAGA
GGATGGTATTGACCTTGCGCACTATTTTTGGGACTGGGTAGACTATGTGC
CTCAACACAACTGCAAGAGTGGTCGGTGGATTTCGAAGAATGAGCTCTCA
GATGAAATCGCCAAGGATTTGAAGAAACGAGGTTTCAAGTTCGTTGGCAG
CACTATTATATATGCTCATTTGCAGGCTACGGGCGTAATCAACGATCATA
ATCCAAGCTGTCCGCGGTATAAACAGGTTCAAAAGTTAGTCAAGAAGAAA
CCGAAGCAATGA
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Coding sequence (CDS) from alignment at NODE_296_length_31928_cov_4.500110:5367..5978-

>Gcaud2558.t1 ID=Gcaud2558.t1|Name=Gcaud2558.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=612bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:5367..5978- (Gracilaria caudata M_176_S67 male)
ATGGCTCCCGCGCCGAAGCGACAGAAGAAGGACACTCGTTGTGAATGGTG
TTTATCGGCCCCGGACTACATTCAGTATCACGACGAAGAATGGGGCGTTC
CACTGTACGATGACAAAAAGGTGTTCGAGTTTCTGTTGCTAGAGAGCTTC
CAGGCTGGACTCAGTTGGCTCACTGTTCTTCGAAAACGAGAAGCTTTTGC
GAATGCGTTCCACGACTTTGATGTTGATCGAATCGCAGCTATGACCGATA
AGGACGTCGAGCGACTACAAAATGATGCCTCCATCATTCGACATAAATTG
AAGATTCGAGCTGCCATAAACAACGCAAAAGCTGTGATCACTATGAGAGA
GGATGGTATTGACCTTGCGCACTATTTTTGGGACTGGGTAGACTATGTGC
CTCAACACAACTGCAAGAGTGGTCGGTGGATTTCGAAGAATGAGCTCTCA
GATGAAATCGCCAAGGATTTGAAGAAACGAGGTTTCAAGTTCGTTGGCAG
CACTATTATATATGCTCATTTGCAGGCTACGGGCGTAATCAACGATCATA
ATCCAAGCTGTCCGCGGTATAAACAGGTTCAAAAGTTAGTCAAGAAGAAA
CCGAAGCAATGA
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