Gcaud2557.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2557.t1
Unique Name	Gcaud2557.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	328

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_296_length_31928_cov_4.500110	contig	NODE_296_length_31928_cov_4.500110:1171..2154 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr48253
PFAMs	BACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10442,ko:K20285,ko:K21912
Evalue	1.83e-67
EggNOG OGs	KOG4441@1\|root,KOG4441@2759\|Eukaryota
Description	protein ubiquitination
COG category	KLT
BRITE	ko00000,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2557	Gcaud2557	Gracilaria caudata M_176_S67 male	gene	NODE_296_length_31928_cov_4.500110 1171..2154 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2557.t1.start1	Gcaud2557.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_296_length_31928_cov_4.500110 1171..1173 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2557.t1.CDS1	Gcaud2557.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_296_length_31928_cov_4.500110 1171..2154 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2557.t1.exon1	Gcaud2557.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_296_length_31928_cov_4.500110 1171..2154 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2557.t1.stop1	Gcaud2557.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_296_length_31928_cov_4.500110 2152..2154 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2557.t1	Gcaud2557.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_296_length_31928_cov_4.500110 1171..2154 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_296_length_31928_cov_4.500110:1171..2154+
coding sequence from alignment at NODE_296_length_31928_cov_4.500110:1171..2154+

mRNA sequence

>Gcaud2557.t1 ID=Gcaud2557.t1|Name=Gcaud2557.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=328bp
MAPAVPKLRAAFFSVASVSRGQLVKRHEACAVMVNGLVVLVGGRGVNKAV
SIYNPKSGVWSTHSGPGNGVQIHHFQCVAAAGKVWIVSSWTGGFPFEKNN
DKIYVYDVASRSWSTRAGLPPWRRRGGAAAVLRGDWIYVVAGNRGGHGAH
ATSLSWMDAYNYKTNKWRIGLPSMPLSAARDHVGGGMVNGQLCIAGGRDG
GDANFFFKNKAATYCFNFGAWKWEKKANMPVPRAGAMTATVCGGKLMVAG
GEGANQAYKRVDLFNGSTWERGADMVRARHGSGLAVAQCRCGQIFIPSGS
GNRGGSPELFSTEKYNPPGTPAVCGRY*

spliced messenger RNA

>Gcaud2557.t1 ID=Gcaud2557.t1|Name=Gcaud2557.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=984bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:1171..2154+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGGCTGTTCCCAAGCTGAGGGCCGCTTTTTTTAGCGTGGCCTC
TGTTTCTCGTGGACAGTTGGTGAAGCGACACGAGGCTTGTGCGGTGATGG
TGAACGGACTTGTGGTGCTTGTGGGCGGGCGTGGTGTGAATAAGGCGGTG
AGTATATACAACCCGAAGAGTGGTGTGTGGAGCACTCACAGCGGTCCCGG
CAACGGCGTGCAGATTCATCACTTTCAGTGCGTTGCGGCCGCGGGTAAGG
TGTGGATTGTGTCGAGCTGGACGGGTGGTTTCCCGTTCGAGAAGAACAAT
GACAAGATCTACGTCTACGACGTGGCGTCCAGATCGTGGTCCACGCGCGC
GGGGCTGCCGCCGTGGAGAAGGCGTGGCGGCGCTGCGGCGGTGCTGCGCG
GAGACTGGATCTACGTGGTGGCCGGCAACAGAGGCGGACATGGTGCACAC
GCCACGTCGCTGAGCTGGATGGATGCGTACAACTACAAGACAAATAAGTG
GCGCATTGGATTGCCGTCAATGCCGCTCAGCGCTGCGCGAGATCATGTGG
GCGGCGGCATGGTGAACGGACAGTTGTGCATTGCCGGCGGTCGTGATGGC
GGCGATGCCAACTTCTTCTTCAAGAACAAGGCCGCCACGTACTGCTTCAA
CTTTGGCGCGTGGAAGTGGGAGAAGAAGGCCAACATGCCCGTGCCGAGGG
CGGGCGCCATGACGGCCACGGTGTGCGGCGGCAAACTGATGGTTGCCGGC
GGTGAGGGCGCCAACCAGGCGTACAAGCGCGTGGACCTGTTCAACGGCAG
CACGTGGGAGCGCGGCGCGGACATGGTGCGCGCGAGACATGGCTCGGGGT
TGGCGGTGGCGCAGTGCCGATGCGGACAGATCTTCATTCCCAGCGGCAGC
GGCAACCGCGGCGGCAGCCCGGAGCTGTTCAGCACGGAGAAGTACAACCC
GCCGGGCACGCCGGCCGTGTGCGGGCGCTATTAA

protein sequence of Gcaud2557.t1

>Gcaud2557.t1 ID=Gcaud2557.t1|Name=Gcaud2557.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=328bp
MAPAVPKLRAAFFSVASVSRGQLVKRHEACAVMVNGLVVLVGGRGVNKAV
SIYNPKSGVWSTHSGPGNGVQIHHFQCVAAAGKVWIVSSWTGGFPFEKNN
DKIYVYDVASRSWSTRAGLPPWRRRGGAAAVLRGDWIYVVAGNRGGHGAH
ATSLSWMDAYNYKTNKWRIGLPSMPLSAARDHVGGGMVNGQLCIAGGRDG
GDANFFFKNKAATYCFNFGAWKWEKKANMPVPRAGAMTATVCGGKLMVAG
GEGANQAYKRVDLFNGSTWERGADMVRARHGSGLAVAQCRCGQIFIPSGS
GNRGGSPELFSTEKYNPPGTPAVCGRY*

mRNA from alignment at NODE_296_length_31928_cov_4.500110:1171..2154+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2557.t1 ID=Gcaud2557.t1|Name=Gcaud2557.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=984bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:1171..2154+ (Gracilaria caudata M_176_S67 male)
ATGGCGCCGGCTGTTCCCAAGCTGAGGGCCGCTTTTTTTAGCGTGGCCTC
TGTTTCTCGTGGACAGTTGGTGAAGCGACACGAGGCTTGTGCGGTGATGG
TGAACGGACTTGTGGTGCTTGTGGGCGGGCGTGGTGTGAATAAGGCGGTG
AGTATATACAACCCGAAGAGTGGTGTGTGGAGCACTCACAGCGGTCCCGG
CAACGGCGTGCAGATTCATCACTTTCAGTGCGTTGCGGCCGCGGGTAAGG
TGTGGATTGTGTCGAGCTGGACGGGTGGTTTCCCGTTCGAGAAGAACAAT
GACAAGATCTACGTCTACGACGTGGCGTCCAGATCGTGGTCCACGCGCGC
GGGGCTGCCGCCGTGGAGAAGGCGTGGCGGCGCTGCGGCGGTGCTGCGCG
GAGACTGGATCTACGTGGTGGCCGGCAACAGAGGCGGACATGGTGCACAC
GCCACGTCGCTGAGCTGGATGGATGCGTACAACTACAAGACAAATAAGTG
GCGCATTGGATTGCCGTCAATGCCGCTCAGCGCTGCGCGAGATCATGTGG
GCGGCGGCATGGTGAACGGACAGTTGTGCATTGCCGGCGGTCGTGATGGC
GGCGATGCCAACTTCTTCTTCAAGAACAAGGCCGCCACGTACTGCTTCAA
CTTTGGCGCGTGGAAGTGGGAGAAGAAGGCCAACATGCCCGTGCCGAGGG
CGGGCGCCATGACGGCCACGGTGTGCGGCGGCAAACTGATGGTTGCCGGC
GGTGAGGGCGCCAACCAGGCGTACAAGCGCGTGGACCTGTTCAACGGCAG
CACGTGGGAGCGCGGCGCGGACATGGTGCGCGCGAGACATGGCTCGGGGT
TGGCGGTGGCGCAGTGCCGATGCGGACAGATCTTCATTCCCAGCGGCAGC
GGCAACCGCGGCGGCAGCCCGGAGCTGTTCAGCACGGAGAAGTACAACCC
GCCGGGCACGCCGGCCGTGTGCGGGCGCTATTAA

Coding sequence (CDS) from alignment at NODE_296_length_31928_cov_4.500110:1171..2154+

>Gcaud2557.t1 ID=Gcaud2557.t1|Name=Gcaud2557.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=984bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:1171..2154+ (Gracilaria caudata M_176_S67 male)
ATGGCGCCGGCTGTTCCCAAGCTGAGGGCCGCTTTTTTTAGCGTGGCCTC
TGTTTCTCGTGGACAGTTGGTGAAGCGACACGAGGCTTGTGCGGTGATGG
TGAACGGACTTGTGGTGCTTGTGGGCGGGCGTGGTGTGAATAAGGCGGTG
AGTATATACAACCCGAAGAGTGGTGTGTGGAGCACTCACAGCGGTCCCGG
CAACGGCGTGCAGATTCATCACTTTCAGTGCGTTGCGGCCGCGGGTAAGG
TGTGGATTGTGTCGAGCTGGACGGGTGGTTTCCCGTTCGAGAAGAACAAT
GACAAGATCTACGTCTACGACGTGGCGTCCAGATCGTGGTCCACGCGCGC
GGGGCTGCCGCCGTGGAGAAGGCGTGGCGGCGCTGCGGCGGTGCTGCGCG
GAGACTGGATCTACGTGGTGGCCGGCAACAGAGGCGGACATGGTGCACAC
GCCACGTCGCTGAGCTGGATGGATGCGTACAACTACAAGACAAATAAGTG
GCGCATTGGATTGCCGTCAATGCCGCTCAGCGCTGCGCGAGATCATGTGG
GCGGCGGCATGGTGAACGGACAGTTGTGCATTGCCGGCGGTCGTGATGGC
GGCGATGCCAACTTCTTCTTCAAGAACAAGGCCGCCACGTACTGCTTCAA
CTTTGGCGCGTGGAAGTGGGAGAAGAAGGCCAACATGCCCGTGCCGAGGG
CGGGCGCCATGACGGCCACGGTGTGCGGCGGCAAACTGATGGTTGCCGGC
GGTGAGGGCGCCAACCAGGCGTACAAGCGCGTGGACCTGTTCAACGGCAG
CACGTGGGAGCGCGGCGCGGACATGGTGCGCGCGAGACATGGCTCGGGGT
TGGCGGTGGCGCAGTGCCGATGCGGACAGATCTTCATTCCCAGCGGCAGC
GGCAACCGCGGCGGCAGCCCGGAGCTGTTCAGCACGGAGAAGTACAACCC
GCCGGGCACGCCGGCCGTGTGCGGGCGCTATTAA