Gcaud2555.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2555.t1
Unique Name	Gcaud2555.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	355

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1552_length_9789_cov_4.214168	contig	NODE_1552_length_9789_cov_4.214168:7368..8655 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2555	Gcaud2555	Gracilaria caudata M_176_S67 male	gene	NODE_1552_length_9789_cov_4.214168 7368..8655 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2555.t1	Gcaud2555.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1552_length_9789_cov_4.214168 7368..8655 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2555.t1.stop1	Gcaud2555.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1552_length_9789_cov_4.214168 7368..7370 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2555.t1.CDS1	Gcaud2555.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1552_length_9789_cov_4.214168 7368..7446 -
Gcaud2555.t1.CDS2	Gcaud2555.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1552_length_9789_cov_4.214168 7541..8196 -
Gcaud2555.t1.CDS3	Gcaud2555.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_1552_length_9789_cov_4.214168 8253..8366 -
Gcaud2555.t1.CDS4	Gcaud2555.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_1552_length_9789_cov_4.214168 8440..8655 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2555.t1.exon1	Gcaud2555.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1552_length_9789_cov_4.214168 7368..7446 -
Gcaud2555.t1.exon2	Gcaud2555.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1552_length_9789_cov_4.214168 7541..8196 -
Gcaud2555.t1.exon3	Gcaud2555.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_1552_length_9789_cov_4.214168 8253..8366 -
Gcaud2555.t1.exon4	Gcaud2555.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_1552_length_9789_cov_4.214168 8440..8655 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2555.t1.intron1	Gcaud2555.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1552_length_9789_cov_4.214168 7447..7540 -
Gcaud2555.t1.intron2	Gcaud2555.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_1552_length_9789_cov_4.214168 8197..8252 -
Gcaud2555.t1.intron3	Gcaud2555.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_1552_length_9789_cov_4.214168 8367..8439 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2555.t1.start1	Gcaud2555.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1552_length_9789_cov_4.214168 8653..8655 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1552_length_9789_cov_4.214168:7368..8655-
coding sequence from alignment at NODE_1552_length_9789_cov_4.214168:7368..8655-

mRNA sequence

>Gcaud2555.t1 ID=Gcaud2555.t1|Name=Gcaud2555.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=355bp
LLQHLFESHKQKKEKKPNGAVLVSTNSCEGTQTEATPISSALRHAVSSEL
AEEAQEIVDNAQYLAEQMQVARSYEIAGWNGDDYRNAHQWAVWVQENVED
FSNPQYLEQMLNSRGLPMTRLLNAERAFFDSVLGFEGVNAEILSHLIASA
VSKKDEAEERLRCLRDALADAVERKNLLKCLDGILSQLGGKGDSVAVEAK
AQALLRIHERTENLDNLDLEEHGVVELLCWEALFAHRQSSKVKQRLAQLV
KRCIARGSYGAIGVINELCEWDVTVFDSYLSSLLEKLRRTWQQTNRRDNS
VEKNTERSENELEIVELRKRIQSLVDMNGVVGNISASVSHEFCLKTGMSP
FFRR*

spliced messenger RNA

>Gcaud2555.t1 ID=Gcaud2555.t1|Name=Gcaud2555.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at NODE_1552_length_9789_cov_4.214168:7368..8655- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCTCCAGCATCTATTCGAATCGCACAAGCAAAAGAAAGAGAAGAAGCC
GAATGGAGCCGTGCTGGTTTCAACCAATTCATGCGAAGGAACTCAAACAG
AAGCAACACCTATTTCGTCAGCTTTGCGGCATGCAGTTTCCTCTGAACTT
GCTGAGGAGGCTCAGGAAATCGTAGACAACGCTCAATATCTGGCTGAACA
AATGCAAGTTGCACGAAGCTATGAAATTGCGGGGTGGAATGGCGATGACT
ATCGAAACGCGCATCAATGGGCTGTATGGGTTCAAGAGAACGTTGAAGAC
TTTTCTAACCCACAATATCTTGAGCAAATGCTGAATTCAAGGGGACTGCC
AATGACTAGATTGTTGAACGCGGAGCGAGCCTTTTTTGATTCTGTATTGG
GTTTCGAAGGAGTCAATGCTGAGATTCTATCCCATTTGATAGCATCAGCA
GTGTCCAAAAAGGACGAAGCGGAAGAACGGTTACGCTGTTTACGCGATGC
TCTCGCAGATGCCGTTGAAAGGAAGAATTTGTTGAAATGTCTGGATGGTA
TTCTGAGCCAATTAGGTGGCAAAGGTGACAGCGTAGCTGTTGAAGCAAAG
GCGCAAGCGCTGTTGCGAATTCATGAACGAACTGAAAACTTGGACAATTT
AGATCTTGAAGAACATGGAGTAGTGGAGCTATTATGCTGGGAAGCGCTGT
TTGCACATCGACAATCGTCTAAAGTGAAACAGCGACTAGCACAGCTTGTC
AAGAGGTGCATTGCGCGAGGAAGTTACGGTGCCATAGGGGTTATAAATGA
GCTTTGTGAGTGGGATGTAACTGTTTTCGATAGTTACCTGAGCAGTCTTC
TTGAAAAACTTCGTCGTACATGGCAGCAAACAAACAGACGGGATAACTCG
GTGGAAAAGAACACTGAACGGTCTGAGAATGAACTGGAAATCGTTGAGTT
GAGAAAGCGAATTCAGAGCCTGGTTGACATGAATGGAGTTGTTGGAAATA
TTTCTGCAAGTGTATCACATGAGTTTTGTTTGAAGACAGGCATGTCTCCG
TTCTTTCGTCGATAA

protein sequence of Gcaud2555.t1

>Gcaud2555.t1 ID=Gcaud2555.t1|Name=Gcaud2555.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=355bp
LLQHLFESHKQKKEKKPNGAVLVSTNSCEGTQTEATPISSALRHAVSSEL
AEEAQEIVDNAQYLAEQMQVARSYEIAGWNGDDYRNAHQWAVWVQENVED
FSNPQYLEQMLNSRGLPMTRLLNAERAFFDSVLGFEGVNAEILSHLIASA
VSKKDEAEERLRCLRDALADAVERKNLLKCLDGILSQLGGKGDSVAVEAK
AQALLRIHERTENLDNLDLEEHGVVELLCWEALFAHRQSSKVKQRLAQLV
KRCIARGSYGAIGVINELCEWDVTVFDSYLSSLLEKLRRTWQQTNRRDNS
VEKNTERSENELEIVELRKRIQSLVDMNGVVGNISASVSHEFCLKTGMSP
FFRR*

mRNA from alignment at NODE_1552_length_9789_cov_4.214168:7368..8655-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2555.t1 ID=Gcaud2555.t1|Name=Gcaud2555.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1288bp|location=Sequence derived from alignment at NODE_1552_length_9789_cov_4.214168:7368..8655- (Gracilaria caudata M_176_S67 male)
TTGCTCCAGCATCTATTCGAATCGCACAAGCAAAAGAAAGAGAAGAAGCC
GAATGGAGCCGTGCTGGTTTCAACCAATTCATGCGAAGGAACTCAAACAG
AAGCAACACCTATTTCGTCAGCTTTGCGGCATGCAGTTTCCTCTGAACTT
GCTGAGGAGGCTCAGGAAATCGTAGACAACGCTCAATATCTGGCTGAACA
AATGCAAGTTGCACGAGTACGTTATAATCTTACGTTCTCTTGGGTTGCTT
GAAAGAAAGAGCATTGAAACTGATGTTGATGTCTTGTAGAGCTATGAAAT
TGCGGGGTGGAATGGCGATGACTATCGAAACGCGCATCAATGGGCTGTAT
GGGTTCAAGAGAACGTTGAAGACTTTTCTAACCCACAATATCTTGAGCAA
ATGGTAAGTCATCGACATGTGATTGCGACTACGTGGAGCACTCCTAACAC
CAGATACAGCTGAATTCAAGGGGACTGCCAATGACTAGATTGTTGAACGC
GGAGCGAGCCTTTTTTGATTCTGTATTGGGTTTCGAAGGAGTCAATGCTG
AGATTCTATCCCATTTGATAGCATCAGCAGTGTCCAAAAAGGACGAAGCG
GAAGAACGGTTACGCTGTTTACGCGATGCTCTCGCAGATGCCGTTGAAAG
GAAGAATTTGTTGAAATGTCTGGATGGTATTCTGAGCCAATTAGGTGGCA
AAGGTGACAGCGTAGCTGTTGAAGCAAAGGCGCAAGCGCTGTTGCGAATT
CATGAACGAACTGAAAACTTGGACAATTTAGATCTTGAAGAACATGGAGT
AGTGGAGCTATTATGCTGGGAAGCGCTGTTTGCACATCGACAATCGTCTA
AAGTGAAACAGCGACTAGCACAGCTTGTCAAGAGGTGCATTGCGCGAGGA
AGTTACGGTGCCATAGGGGTTATAAATGAGCTTTGTGAGTGGGATGTAAC
TGTTTTCGATAGTTACCTGAGCAGTCTTCTTGAAAAACTTCGTCGTACAT
GGCAGCAAACAAACAGACGGGATAACTCGGTGGAAAAGAACACTGAACGG
TCTGAGAATGAACTGGAAATCGTTGAGTTGAGAAAGCGAATTCAGAGCCT
GGTTGACATGAATGGGTGCGTCCAAAGAAACTTCTCTCCAGTCTGGACAA
AGGCGCGAACCCAAGTACGATGTGAAACTAACCAAATTCTTTGTGTTGCC
ATACGACAGAGTTGTTGGAAATATTTCTGCAAGTGTATCACATGAGTTTT
GTTTGAAGACAGGCATGTCTCCGTTCTTTCGTCGATAA

Coding sequence (CDS) from alignment at NODE_1552_length_9789_cov_4.214168:7368..8655-

>Gcaud2555.t1 ID=Gcaud2555.t1|Name=Gcaud2555.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1065bp|location=Sequence derived from alignment at NODE_1552_length_9789_cov_4.214168:7368..8655- (Gracilaria caudata M_176_S67 male)
TTGCTCCAGCATCTATTCGAATCGCACAAGCAAAAGAAAGAGAAGAAGCC
GAATGGAGCCGTGCTGGTTTCAACCAATTCATGCGAAGGAACTCAAACAG
AAGCAACACCTATTTCGTCAGCTTTGCGGCATGCAGTTTCCTCTGAACTT
GCTGAGGAGGCTCAGGAAATCGTAGACAACGCTCAATATCTGGCTGAACA
AATGCAAGTTGCACGAAGCTATGAAATTGCGGGGTGGAATGGCGATGACT
ATCGAAACGCGCATCAATGGGCTGTATGGGTTCAAGAGAACGTTGAAGAC
TTTTCTAACCCACAATATCTTGAGCAAATGCTGAATTCAAGGGGACTGCC
AATGACTAGATTGTTGAACGCGGAGCGAGCCTTTTTTGATTCTGTATTGG
GTTTCGAAGGAGTCAATGCTGAGATTCTATCCCATTTGATAGCATCAGCA
GTGTCCAAAAAGGACGAAGCGGAAGAACGGTTACGCTGTTTACGCGATGC
TCTCGCAGATGCCGTTGAAAGGAAGAATTTGTTGAAATGTCTGGATGGTA
TTCTGAGCCAATTAGGTGGCAAAGGTGACAGCGTAGCTGTTGAAGCAAAG
GCGCAAGCGCTGTTGCGAATTCATGAACGAACTGAAAACTTGGACAATTT
AGATCTTGAAGAACATGGAGTAGTGGAGCTATTATGCTGGGAAGCGCTGT
TTGCACATCGACAATCGTCTAAAGTGAAACAGCGACTAGCACAGCTTGTC
AAGAGGTGCATTGCGCGAGGAAGTTACGGTGCCATAGGGGTTATAAATGA
GCTTTGTGAGTGGGATGTAACTGTTTTCGATAGTTACCTGAGCAGTCTTC
TTGAAAAACTTCGTCGTACATGGCAGCAAACAAACAGACGGGATAACTCG
GTGGAAAAGAACACTGAACGGTCTGAGAATGAACTGGAAATCGTTGAGTT
GAGAAAGCGAATTCAGAGCCTGGTTGACATGAATGGAGTTGTTGGAAATA
TTTCTGCAAGTGTATCACATGAGTTTTGTTTGAAGACAGGCATGTCTCCG
TTCTTTCGTCGATAA