Gcaud2551.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2551.t1
Unique Name	Gcaud2551.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	422

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_146_length_43567_cov_5.009154	contig	NODE_146_length_43567_cov_5.009154:39997..41262 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2551	Gcaud2551	Gracilaria caudata M_176_S67 male	gene	NODE_146_length_43567_cov_5.009154 39997..41262 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2551.t1.start1	Gcaud2551.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_146_length_43567_cov_5.009154 39997..39999 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2551.t1.CDS1	Gcaud2551.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_146_length_43567_cov_5.009154 39997..41262 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2551.t1.exon1	Gcaud2551.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_146_length_43567_cov_5.009154 39997..41262 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2551.t1.stop1	Gcaud2551.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_146_length_43567_cov_5.009154 41260..41262 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2551.t1	Gcaud2551.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_146_length_43567_cov_5.009154 39997..41262 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_146_length_43567_cov_5.009154:39997..41262+
coding sequence from alignment at NODE_146_length_43567_cov_5.009154:39997..41262+

mRNA sequence

>Gcaud2551.t1 ID=Gcaud2551.t1|Name=Gcaud2551.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=422bp
MAGGAPVAPPPLPLQALYQSKADMWVHALLQFIMTTKNIFSPHINLSDAN
DIRKFVNVLGPNNGQLSSIAHLINGDFADIGALVSLIHTKVNPAPRSTSE
PANLSLQDHNDNETVEKDPTKFTYAEVLQRRIPPPAPVQPSRLPPITPHN
AEDVNSFNPDGFMLSKKGKNRLYRTALNTIGHEPKRFALLCTSDQHEPMQ
NPFNITRCLSEAGIREPLTLVKTGDPRKFLLFAPESCIPLLQPAYNRFHD
MTVRLCGIKRLPSITVNPIGSLKDHFPALQLENILKHLRNEIERLESPTA
TWRPRLFFADSLRDHESESYTALKEKRPASPLQPFPPRPPIRNNVSWHHN
TTDPPDAIAAERVAMEISLPAAPATATPRHQPANSVPNQNISALRSNRFS
TFNNQLGRSVASAPNAHIPVN*

spliced messenger RNA

>Gcaud2551.t1 ID=Gcaud2551.t1|Name=Gcaud2551.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1266bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:39997..41262+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGGGGAGCCCCGGTTGCGCCGCCTCCCTTGCCTCTGCAGGCCCT
CTACCAGAGCAAGGCGGACATGTGGGTACATGCTCTCCTACAGTTCATCA
TGACTACAAAGAACATATTCAGTCCTCATATCAACCTCTCTGATGCCAAT
GATATCAGAAAGTTCGTCAACGTCCTTGGCCCGAACAACGGACAACTTTC
TAGCATAGCGCATCTTATAAATGGCGACTTCGCTGATATTGGGGCCCTCG
TCTCCCTGATTCATACCAAAGTCAACCCAGCTCCCCGGTCCACCAGCGAA
CCGGCAAATTTATCACTCCAAGATCACAATGACAATGAAACTGTCGAGAA
GGACCCTACTAAATTTACCTACGCAGAAGTTCTTCAGCGTCGCATCCCAC
CGCCTGCCCCGGTTCAACCATCTCGCCTGCCGCCCATAACGCCGCACAAC
GCCGAAGACGTTAATTCTTTCAACCCTGATGGATTTATGCTCTCCAAGAA
AGGGAAAAACCGCCTTTACCGTACTGCACTTAACACAATTGGACATGAAC
CCAAAAGATTTGCACTCCTTTGTACCTCCGATCAACATGAACCCATGCAG
AATCCTTTCAACATTACCAGATGCCTTTCTGAAGCTGGAATTCGTGAGCC
TCTTACGCTAGTTAAAACTGGTGACCCTCGAAAATTCCTACTGTTTGCGC
CTGAGAGCTGCATTCCGTTACTACAGCCTGCCTATAATCGATTCCACGAT
ATGACTGTTCGTCTTTGTGGAATTAAACGTCTGCCAAGCATTACTGTTAA
TCCCATCGGAAGCCTCAAAGACCATTTCCCAGCTCTGCAATTAGAGAACA
TACTTAAGCACCTTCGTAACGAAATTGAACGCCTGGAATCCCCAACGGCG
ACGTGGAGACCACGTTTATTCTTCGCTGATAGTCTGCGTGACCACGAGAG
TGAATCTTATACGGCCCTGAAAGAGAAACGTCCGGCATCTCCCCTACAAC
CATTTCCTCCGCGCCCTCCCATTCGGAACAACGTATCATGGCACCACAAT
ACTACGGATCCCCCCGATGCAATCGCAGCTGAAAGAGTCGCAATGGAAAT
ATCCCTCCCCGCAGCGCCTGCAACAGCCACACCACGACACCAACCTGCTA
ATTCAGTGCCTAATCAGAATATCTCGGCATTAAGATCAAACCGCTTTTCC
ACTTTCAATAACCAACTTGGACGCTCAGTCGCGTCTGCACCCAACGCGCA
CATTCCTGTTAATTAG

protein sequence of Gcaud2551.t1

>Gcaud2551.t1 ID=Gcaud2551.t1|Name=Gcaud2551.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=422bp
MAGGAPVAPPPLPLQALYQSKADMWVHALLQFIMTTKNIFSPHINLSDAN
DIRKFVNVLGPNNGQLSSIAHLINGDFADIGALVSLIHTKVNPAPRSTSE
PANLSLQDHNDNETVEKDPTKFTYAEVLQRRIPPPAPVQPSRLPPITPHN
AEDVNSFNPDGFMLSKKGKNRLYRTALNTIGHEPKRFALLCTSDQHEPMQ
NPFNITRCLSEAGIREPLTLVKTGDPRKFLLFAPESCIPLLQPAYNRFHD
MTVRLCGIKRLPSITVNPIGSLKDHFPALQLENILKHLRNEIERLESPTA
TWRPRLFFADSLRDHESESYTALKEKRPASPLQPFPPRPPIRNNVSWHHN
TTDPPDAIAAERVAMEISLPAAPATATPRHQPANSVPNQNISALRSNRFS
TFNNQLGRSVASAPNAHIPVN*

mRNA from alignment at NODE_146_length_43567_cov_5.009154:39997..41262+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2551.t1 ID=Gcaud2551.t1|Name=Gcaud2551.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1266bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:39997..41262+ (Gracilaria caudata M_176_S67 male)
ATGGCGGGGGGAGCCCCGGTTGCGCCGCCTCCCTTGCCTCTGCAGGCCCT
CTACCAGAGCAAGGCGGACATGTGGGTACATGCTCTCCTACAGTTCATCA
TGACTACAAAGAACATATTCAGTCCTCATATCAACCTCTCTGATGCCAAT
GATATCAGAAAGTTCGTCAACGTCCTTGGCCCGAACAACGGACAACTTTC
TAGCATAGCGCATCTTATAAATGGCGACTTCGCTGATATTGGGGCCCTCG
TCTCCCTGATTCATACCAAAGTCAACCCAGCTCCCCGGTCCACCAGCGAA
CCGGCAAATTTATCACTCCAAGATCACAATGACAATGAAACTGTCGAGAA
GGACCCTACTAAATTTACCTACGCAGAAGTTCTTCAGCGTCGCATCCCAC
CGCCTGCCCCGGTTCAACCATCTCGCCTGCCGCCCATAACGCCGCACAAC
GCCGAAGACGTTAATTCTTTCAACCCTGATGGATTTATGCTCTCCAAGAA
AGGGAAAAACCGCCTTTACCGTACTGCACTTAACACAATTGGACATGAAC
CCAAAAGATTTGCACTCCTTTGTACCTCCGATCAACATGAACCCATGCAG
AATCCTTTCAACATTACCAGATGCCTTTCTGAAGCTGGAATTCGTGAGCC
TCTTACGCTAGTTAAAACTGGTGACCCTCGAAAATTCCTACTGTTTGCGC
CTGAGAGCTGCATTCCGTTACTACAGCCTGCCTATAATCGATTCCACGAT
ATGACTGTTCGTCTTTGTGGAATTAAACGTCTGCCAAGCATTACTGTTAA
TCCCATCGGAAGCCTCAAAGACCATTTCCCAGCTCTGCAATTAGAGAACA
TACTTAAGCACCTTCGTAACGAAATTGAACGCCTGGAATCCCCAACGGCG
ACGTGGAGACCACGTTTATTCTTCGCTGATAGTCTGCGTGACCACGAGAG
TGAATCTTATACGGCCCTGAAAGAGAAACGTCCGGCATCTCCCCTACAAC
CATTTCCTCCGCGCCCTCCCATTCGGAACAACGTATCATGGCACCACAAT
ACTACGGATCCCCCCGATGCAATCGCAGCTGAAAGAGTCGCAATGGAAAT
ATCCCTCCCCGCAGCGCCTGCAACAGCCACACCACGACACCAACCTGCTA
ATTCAGTGCCTAATCAGAATATCTCGGCATTAAGATCAAACCGCTTTTCC
ACTTTCAATAACCAACTTGGACGCTCAGTCGCGTCTGCACCCAACGCGCA
CATTCCTGTTAATTAG

Coding sequence (CDS) from alignment at NODE_146_length_43567_cov_5.009154:39997..41262+

>Gcaud2551.t1 ID=Gcaud2551.t1|Name=Gcaud2551.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1266bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:39997..41262+ (Gracilaria caudata M_176_S67 male)
ATGGCGGGGGGAGCCCCGGTTGCGCCGCCTCCCTTGCCTCTGCAGGCCCT
CTACCAGAGCAAGGCGGACATGTGGGTACATGCTCTCCTACAGTTCATCA
TGACTACAAAGAACATATTCAGTCCTCATATCAACCTCTCTGATGCCAAT
GATATCAGAAAGTTCGTCAACGTCCTTGGCCCGAACAACGGACAACTTTC
TAGCATAGCGCATCTTATAAATGGCGACTTCGCTGATATTGGGGCCCTCG
TCTCCCTGATTCATACCAAAGTCAACCCAGCTCCCCGGTCCACCAGCGAA
CCGGCAAATTTATCACTCCAAGATCACAATGACAATGAAACTGTCGAGAA
GGACCCTACTAAATTTACCTACGCAGAAGTTCTTCAGCGTCGCATCCCAC
CGCCTGCCCCGGTTCAACCATCTCGCCTGCCGCCCATAACGCCGCACAAC
GCCGAAGACGTTAATTCTTTCAACCCTGATGGATTTATGCTCTCCAAGAA
AGGGAAAAACCGCCTTTACCGTACTGCACTTAACACAATTGGACATGAAC
CCAAAAGATTTGCACTCCTTTGTACCTCCGATCAACATGAACCCATGCAG
AATCCTTTCAACATTACCAGATGCCTTTCTGAAGCTGGAATTCGTGAGCC
TCTTACGCTAGTTAAAACTGGTGACCCTCGAAAATTCCTACTGTTTGCGC
CTGAGAGCTGCATTCCGTTACTACAGCCTGCCTATAATCGATTCCACGAT
ATGACTGTTCGTCTTTGTGGAATTAAACGTCTGCCAAGCATTACTGTTAA
TCCCATCGGAAGCCTCAAAGACCATTTCCCAGCTCTGCAATTAGAGAACA
TACTTAAGCACCTTCGTAACGAAATTGAACGCCTGGAATCCCCAACGGCG
ACGTGGAGACCACGTTTATTCTTCGCTGATAGTCTGCGTGACCACGAGAG
TGAATCTTATACGGCCCTGAAAGAGAAACGTCCGGCATCTCCCCTACAAC
CATTTCCTCCGCGCCCTCCCATTCGGAACAACGTATCATGGCACCACAAT
ACTACGGATCCCCCCGATGCAATCGCAGCTGAAAGAGTCGCAATGGAAAT
ATCCCTCCCCGCAGCGCCTGCAACAGCCACACCACGACACCAACCTGCTA
ATTCAGTGCCTAATCAGAATATCTCGGCATTAAGATCAAACCGCTTTTCC
ACTTTCAATAACCAACTTGGACGCTCAGTCGCGTCTGCACCCAACGCGCA
CATTCCTGTTAATTAG