Gcaud2550.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2550.t1
Unique Name	Gcaud2550.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	401

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_146_length_43567_cov_5.009154	contig	NODE_146_length_43567_cov_5.009154:38337..39539 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2550	Gcaud2550	Gracilaria caudata M_176_S67 male	gene	NODE_146_length_43567_cov_5.009154 38337..39539 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2550.t1.stop1	Gcaud2550.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_146_length_43567_cov_5.009154 38337..38339 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2550.t1.CDS1	Gcaud2550.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_146_length_43567_cov_5.009154 38337..39539 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2550.t1.exon1	Gcaud2550.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_146_length_43567_cov_5.009154 38337..39539 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2550.t1.start1	Gcaud2550.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_146_length_43567_cov_5.009154 39537..39539 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2550.t1	Gcaud2550.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_146_length_43567_cov_5.009154 38337..39539 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_146_length_43567_cov_5.009154:38337..39539-
coding sequence from alignment at NODE_146_length_43567_cov_5.009154:38337..39539-

mRNA sequence

>Gcaud2550.t1 ID=Gcaud2550.t1|Name=Gcaud2550.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=401bp
MTGPSASRPPPSTSSAVEVGASAQSTHDSIAPVLPVHSLHSLRTLLDELS
ILSIKTVPFPSLHDDLQRASLRVTHLSAETLNTLRLFCSSAVKERYDIRV
VHDLLKDGLNPAAKSLLTASNSQHKRLAQVSSTLAMEYEQAANSLTECLT
RATHARAQQSSRHQERQTAVASKFSELTSTRRSAQGALRAFEEADMRHAE
AEQRESVARKRVVALQAAHVAAVVGGFVSARSTPFVIGAGSAAALASTFE
GEVMRAREERAVHLRQRNDARDRRSQLEGNVATLVTELRECRKEAVLEST
VLDSLVDCANLLRELAGVMLQAEAFWKGVSTGLQDGLLELVTAAEGREYD
DGMRQRLVQVERFWEDVGSLCENAMRGVDNGLNSNEGIQGRQVDRIEWDL
*

spliced messenger RNA

>Gcaud2550.t1 ID=Gcaud2550.t1|Name=Gcaud2550.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:38337..39539- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGGTCCTAGCGCCTCTCGTCCGCCGCCGTCTACCAGCTCCGCAGT
TGAGGTTGGTGCTTCAGCTCAGAGTACACACGACTCCATCGCGCCAGTAC
TTCCTGTGCATTCTTTGCATAGCTTACGCACCTTGCTGGATGAACTCTCC
ATACTCTCTATCAAAACGGTGCCCTTTCCATCGCTACATGATGATCTACA
GCGCGCTAGTCTTCGTGTGACGCATCTTTCGGCGGAGACGTTGAATACTT
TGCGCTTATTTTGTTCCTCGGCCGTTAAGGAACGCTATGATATTCGAGTC
GTACATGACCTTCTGAAGGACGGTTTGAATCCTGCCGCAAAGTCTCTTCT
CACGGCCTCCAATTCTCAGCATAAGAGACTGGCACAAGTATCCAGCACAC
TCGCGATGGAATACGAACAGGCTGCTAACTCTCTCACAGAGTGCCTCACG
CGAGCAACGCATGCCCGCGCCCAGCAGAGTTCCCGTCATCAAGAACGTCA
GACTGCTGTCGCCAGCAAATTCAGCGAACTGACAAGCACCAGACGAAGTG
CACAAGGTGCGCTGCGCGCGTTTGAAGAAGCTGATATGCGCCACGCAGAG
GCCGAGCAAAGAGAGAGCGTGGCGCGCAAACGCGTCGTGGCTTTGCAGGC
TGCACATGTTGCTGCTGTTGTAGGGGGCTTCGTCAGTGCCAGGTCGACGC
CATTTGTGATTGGTGCTGGTTCAGCTGCTGCGTTGGCTTCTACATTTGAG
GGTGAAGTCATGCGTGCTCGTGAGGAGCGTGCTGTGCATCTCAGACAACG
AAATGATGCTCGAGATCGTCGTTCACAATTGGAAGGTAATGTGGCTACGC
TTGTGACTGAATTGCGAGAGTGTAGGAAAGAAGCGGTTCTGGAAAGTACC
GTCTTGGATTCTCTTGTTGATTGTGCCAACTTGCTGAGAGAGTTGGCTGG
TGTAATGCTGCAGGCGGAGGCCTTTTGGAAAGGAGTGTCTACTGGACTCC
AGGATGGTCTGTTGGAGTTGGTTACAGCAGCAGAAGGACGTGAATATGAT
GATGGTATGCGACAAAGATTAGTGCAGGTTGAAAGGTTCTGGGAAGATGT
AGGTTCCTTGTGTGAGAACGCAATGAGGGGGGTTGACAATGGGCTCAATA
GTAACGAGGGTATACAAGGGCGTCAAGTTGATAGAATCGAATGGGATTTA
TGA

protein sequence of Gcaud2550.t1

>Gcaud2550.t1 ID=Gcaud2550.t1|Name=Gcaud2550.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=401bp
MTGPSASRPPPSTSSAVEVGASAQSTHDSIAPVLPVHSLHSLRTLLDELS
ILSIKTVPFPSLHDDLQRASLRVTHLSAETLNTLRLFCSSAVKERYDIRV
VHDLLKDGLNPAAKSLLTASNSQHKRLAQVSSTLAMEYEQAANSLTECLT
RATHARAQQSSRHQERQTAVASKFSELTSTRRSAQGALRAFEEADMRHAE
AEQRESVARKRVVALQAAHVAAVVGGFVSARSTPFVIGAGSAAALASTFE
GEVMRAREERAVHLRQRNDARDRRSQLEGNVATLVTELRECRKEAVLEST
VLDSLVDCANLLRELAGVMLQAEAFWKGVSTGLQDGLLELVTAAEGREYD
DGMRQRLVQVERFWEDVGSLCENAMRGVDNGLNSNEGIQGRQVDRIEWDL
*

mRNA from alignment at NODE_146_length_43567_cov_5.009154:38337..39539-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2550.t1 ID=Gcaud2550.t1|Name=Gcaud2550.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:38337..39539- (Gracilaria caudata M_176_S67 male)
ATGACTGGTCCTAGCGCCTCTCGTCCGCCGCCGTCTACCAGCTCCGCAGT
TGAGGTTGGTGCTTCAGCTCAGAGTACACACGACTCCATCGCGCCAGTAC
TTCCTGTGCATTCTTTGCATAGCTTACGCACCTTGCTGGATGAACTCTCC
ATACTCTCTATCAAAACGGTGCCCTTTCCATCGCTACATGATGATCTACA
GCGCGCTAGTCTTCGTGTGACGCATCTTTCGGCGGAGACGTTGAATACTT
TGCGCTTATTTTGTTCCTCGGCCGTTAAGGAACGCTATGATATTCGAGTC
GTACATGACCTTCTGAAGGACGGTTTGAATCCTGCCGCAAAGTCTCTTCT
CACGGCCTCCAATTCTCAGCATAAGAGACTGGCACAAGTATCCAGCACAC
TCGCGATGGAATACGAACAGGCTGCTAACTCTCTCACAGAGTGCCTCACG
CGAGCAACGCATGCCCGCGCCCAGCAGAGTTCCCGTCATCAAGAACGTCA
GACTGCTGTCGCCAGCAAATTCAGCGAACTGACAAGCACCAGACGAAGTG
CACAAGGTGCGCTGCGCGCGTTTGAAGAAGCTGATATGCGCCACGCAGAG
GCCGAGCAAAGAGAGAGCGTGGCGCGCAAACGCGTCGTGGCTTTGCAGGC
TGCACATGTTGCTGCTGTTGTAGGGGGCTTCGTCAGTGCCAGGTCGACGC
CATTTGTGATTGGTGCTGGTTCAGCTGCTGCGTTGGCTTCTACATTTGAG
GGTGAAGTCATGCGTGCTCGTGAGGAGCGTGCTGTGCATCTCAGACAACG
AAATGATGCTCGAGATCGTCGTTCACAATTGGAAGGTAATGTGGCTACGC
TTGTGACTGAATTGCGAGAGTGTAGGAAAGAAGCGGTTCTGGAAAGTACC
GTCTTGGATTCTCTTGTTGATTGTGCCAACTTGCTGAGAGAGTTGGCTGG
TGTAATGCTGCAGGCGGAGGCCTTTTGGAAAGGAGTGTCTACTGGACTCC
AGGATGGTCTGTTGGAGTTGGTTACAGCAGCAGAAGGACGTGAATATGAT
GATGGTATGCGACAAAGATTAGTGCAGGTTGAAAGGTTCTGGGAAGATGT
AGGTTCCTTGTGTGAGAACGCAATGAGGGGGGTTGACAATGGGCTCAATA
GTAACGAGGGTATACAAGGGCGTCAAGTTGATAGAATCGAATGGGATTTA
TGA

Coding sequence (CDS) from alignment at NODE_146_length_43567_cov_5.009154:38337..39539-

>Gcaud2550.t1 ID=Gcaud2550.t1|Name=Gcaud2550.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1203bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:38337..39539- (Gracilaria caudata M_176_S67 male)
ATGACTGGTCCTAGCGCCTCTCGTCCGCCGCCGTCTACCAGCTCCGCAGT
TGAGGTTGGTGCTTCAGCTCAGAGTACACACGACTCCATCGCGCCAGTAC
TTCCTGTGCATTCTTTGCATAGCTTACGCACCTTGCTGGATGAACTCTCC
ATACTCTCTATCAAAACGGTGCCCTTTCCATCGCTACATGATGATCTACA
GCGCGCTAGTCTTCGTGTGACGCATCTTTCGGCGGAGACGTTGAATACTT
TGCGCTTATTTTGTTCCTCGGCCGTTAAGGAACGCTATGATATTCGAGTC
GTACATGACCTTCTGAAGGACGGTTTGAATCCTGCCGCAAAGTCTCTTCT
CACGGCCTCCAATTCTCAGCATAAGAGACTGGCACAAGTATCCAGCACAC
TCGCGATGGAATACGAACAGGCTGCTAACTCTCTCACAGAGTGCCTCACG
CGAGCAACGCATGCCCGCGCCCAGCAGAGTTCCCGTCATCAAGAACGTCA
GACTGCTGTCGCCAGCAAATTCAGCGAACTGACAAGCACCAGACGAAGTG
CACAAGGTGCGCTGCGCGCGTTTGAAGAAGCTGATATGCGCCACGCAGAG
GCCGAGCAAAGAGAGAGCGTGGCGCGCAAACGCGTCGTGGCTTTGCAGGC
TGCACATGTTGCTGCTGTTGTAGGGGGCTTCGTCAGTGCCAGGTCGACGC
CATTTGTGATTGGTGCTGGTTCAGCTGCTGCGTTGGCTTCTACATTTGAG
GGTGAAGTCATGCGTGCTCGTGAGGAGCGTGCTGTGCATCTCAGACAACG
AAATGATGCTCGAGATCGTCGTTCACAATTGGAAGGTAATGTGGCTACGC
TTGTGACTGAATTGCGAGAGTGTAGGAAAGAAGCGGTTCTGGAAAGTACC
GTCTTGGATTCTCTTGTTGATTGTGCCAACTTGCTGAGAGAGTTGGCTGG
TGTAATGCTGCAGGCGGAGGCCTTTTGGAAAGGAGTGTCTACTGGACTCC
AGGATGGTCTGTTGGAGTTGGTTACAGCAGCAGAAGGACGTGAATATGAT
GATGGTATGCGACAAAGATTAGTGCAGGTTGAAAGGTTCTGGGAAGATGT
AGGTTCCTTGTGTGAGAACGCAATGAGGGGGGTTGACAATGGGCTCAATA
GTAACGAGGGTATACAAGGGCGTCAAGTTGATAGAATCGAATGGGATTTA
TGA