Gcaud2549.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2549.t1
Unique Name	Gcaud2549.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	394

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_146_length_43567_cov_5.009154	contig	NODE_146_length_43567_cov_5.009154:36399..37580 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703545.1
PFAMs	Branch
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG Reaction	R05925,R06189
KEGG Pathway	ko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG Module	M00057
GOs	GO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
Evalue	6.85e-61
EggNOG OGs	KOG0799@1\|root,KOG0799@2759\|Eukaryota
EC	2.4.1.150,2.4.2.26
Description	acetylglucosaminyltransferase activity
COG category	O
CAZy	GT14
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2549	Gcaud2549	Gracilaria caudata M_176_S67 male	gene	NODE_146_length_43567_cov_5.009154 36399..37580 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2549.t1.start1	Gcaud2549.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_146_length_43567_cov_5.009154 36399..36401 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2549.t1.CDS1	Gcaud2549.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_146_length_43567_cov_5.009154 36399..37580 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2549.t1.exon1	Gcaud2549.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_146_length_43567_cov_5.009154 36399..37580 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2549.t1.stop1	Gcaud2549.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_146_length_43567_cov_5.009154 37578..37580 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2549.t1	Gcaud2549.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_146_length_43567_cov_5.009154 36399..37580 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_146_length_43567_cov_5.009154:36399..37580+
coding sequence from alignment at NODE_146_length_43567_cov_5.009154:36399..37580+

mRNA sequence

>Gcaud2549.t1 ID=Gcaud2549.t1|Name=Gcaud2549.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=394bp
MRFVQFLRLLALLLLLLSAAVRPGVAASLSWIPSLVREQDEQVSIAYFIQ
ISESTITMLPRLIRAVYHPENTYVIHMDKKIPEWQRTHAKTSLMNGDERY
KKNVRVMQSEPVTYRGISMVLNLLSAMQAASDSSKDWTYFINISGSDYPL
VSATNQRRLLTTQDFATRRRSFLSIAKQDWWSQSKEYRFERLFTDTSLSF
NSSEHRIVDSYTDQPIAFVHNFTFVAAEAWMVLHRDLVDFMLTGSTARRM
LLAFAYALEPEEHYFATLAYNSPEFNDTLVPHSLRHVEWVHNGKHSGQHP
YYVDQLESDGKTFMFQEKIKRSGCFFTRKIREKDSPILDYIDKHINGVAD
DAVTEDVKDYVEYVSGKLACIAQLKSSEYAVECFDYEDTVEDK*

spliced messenger RNA

>Gcaud2549.t1 ID=Gcaud2549.t1|Name=Gcaud2549.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1182bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:36399..37580+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTTCGTACAATTCTTGCGTCTTCTCGCgctgctgctgctgctgct
ttctgctgcCGTTCGTCCTGGTGTGGCCGCGTCTTTGTCATGGATTCCGT
CGCTTGTTCGTGAGCAGGATGAACAGGTTTCTATTGCGTACTTCATTCAG
ATTTCGGAATCTACCATCACCATGCTTCCCCGCCTCATTCGCGCCGTGTA
TCACCCTGAAAATACATATGTGATCCACATGGATAAGAAGATTCCCGAAT
GGCAGCGCACTCATGCGAAGACGTCTCTTATGAATGGTGACGAACGATAT
AAGAAAAATGTGCGTGTCATGCAATCTGAGCCTGTTACTTACCGTGGAAT
AAGTATGGTGCTTAATTTGCTCAGTGCCATGCAGGCTGCAAGTGACAGTT
CGAAGGACTGGACGTACTTCATCAACATTAGCGGCAGTGACTACCCACTG
GTGTCTGCAACCAATCAACGCCGGCTTCTGACCACTCAGGACTTCGCAAC
GCGAAGGCGGAGCTTTCTGTCTATCGCGAAACAAGATTGGTGGTCGCAAA
GCAAGGAATACCGTTTTGAACGACTCTTTACAGACACAAGTCTCTCCTTC
AACAGCTCTGAGCATCGCATAGTTGACTCCTATACTGATCAACCAATTGC
CTTTGTGCACAACTTCACGTTCGTGGCAGCAGAGGCATGGATGGTCCTTC
ACCGAGATCTTGTGGATTTCATGCTAACCGGTTCGACCGCAAGACGTATG
CTCCTGGCTTTTGCATATGCGCTCGAGCCAGAGGAGCATTATTTCGCGAC
GCTTGCGTATAATTCTCCAGAGTTCAACGACACGCTCGTGCCACATTCTT
TGAGACACGTCGAATGGGTGCATAACGGTAAACATTCTGGACAGCATCCT
TATTACGTTGATCAGTTGGAGAGCGATGGCAAGACGTTCATGTTTCAAGA
AAAGATCAAGAGGTCTGGTTGTTTCTTCACTCGTAAGATCCGTGAGAAGG
ATTCTCCCATCCTGGATTACATTGACAAGCATATAAATGGAGTGGCCGAC
GACGCTGTAACGGAAGATGTTAAGGATTATGTGGAGTATGTAAGTGGGAA
GCTTGCATGTATTGCACAGCTGAAGAGCTCGGAGTATGCAGTTGAATGTT
TCGATTATGAAGACACTGTTGAAGATAAGTGA

protein sequence of Gcaud2549.t1

>Gcaud2549.t1 ID=Gcaud2549.t1|Name=Gcaud2549.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=394bp
MRFVQFLRLLALLLLLLSAAVRPGVAASLSWIPSLVREQDEQVSIAYFIQ
ISESTITMLPRLIRAVYHPENTYVIHMDKKIPEWQRTHAKTSLMNGDERY
KKNVRVMQSEPVTYRGISMVLNLLSAMQAASDSSKDWTYFINISGSDYPL
VSATNQRRLLTTQDFATRRRSFLSIAKQDWWSQSKEYRFERLFTDTSLSF
NSSEHRIVDSYTDQPIAFVHNFTFVAAEAWMVLHRDLVDFMLTGSTARRM
LLAFAYALEPEEHYFATLAYNSPEFNDTLVPHSLRHVEWVHNGKHSGQHP
YYVDQLESDGKTFMFQEKIKRSGCFFTRKIREKDSPILDYIDKHINGVAD
DAVTEDVKDYVEYVSGKLACIAQLKSSEYAVECFDYEDTVEDK*

mRNA from alignment at NODE_146_length_43567_cov_5.009154:36399..37580+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2549.t1 ID=Gcaud2549.t1|Name=Gcaud2549.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1182bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:36399..37580+ (Gracilaria caudata M_176_S67 male)
ATGCGTTTCGTACAATTCTTGCGTCTTCTCGCgctgctgctgctgctgct
ttctgctgcCGTTCGTCCTGGTGTGGCCGCGTCTTTGTCATGGATTCCGT
CGCTTGTTCGTGAGCAGGATGAACAGGTTTCTATTGCGTACTTCATTCAG
ATTTCGGAATCTACCATCACCATGCTTCCCCGCCTCATTCGCGCCGTGTA
TCACCCTGAAAATACATATGTGATCCACATGGATAAGAAGATTCCCGAAT
GGCAGCGCACTCATGCGAAGACGTCTCTTATGAATGGTGACGAACGATAT
AAGAAAAATGTGCGTGTCATGCAATCTGAGCCTGTTACTTACCGTGGAAT
AAGTATGGTGCTTAATTTGCTCAGTGCCATGCAGGCTGCAAGTGACAGTT
CGAAGGACTGGACGTACTTCATCAACATTAGCGGCAGTGACTACCCACTG
GTGTCTGCAACCAATCAACGCCGGCTTCTGACCACTCAGGACTTCGCAAC
GCGAAGGCGGAGCTTTCTGTCTATCGCGAAACAAGATTGGTGGTCGCAAA
GCAAGGAATACCGTTTTGAACGACTCTTTACAGACACAAGTCTCTCCTTC
AACAGCTCTGAGCATCGCATAGTTGACTCCTATACTGATCAACCAATTGC
CTTTGTGCACAACTTCACGTTCGTGGCAGCAGAGGCATGGATGGTCCTTC
ACCGAGATCTTGTGGATTTCATGCTAACCGGTTCGACCGCAAGACGTATG
CTCCTGGCTTTTGCATATGCGCTCGAGCCAGAGGAGCATTATTTCGCGAC
GCTTGCGTATAATTCTCCAGAGTTCAACGACACGCTCGTGCCACATTCTT
TGAGACACGTCGAATGGGTGCATAACGGTAAACATTCTGGACAGCATCCT
TATTACGTTGATCAGTTGGAGAGCGATGGCAAGACGTTCATGTTTCAAGA
AAAGATCAAGAGGTCTGGTTGTTTCTTCACTCGTAAGATCCGTGAGAAGG
ATTCTCCCATCCTGGATTACATTGACAAGCATATAAATGGAGTGGCCGAC
GACGCTGTAACGGAAGATGTTAAGGATTATGTGGAGTATGTAAGTGGGAA
GCTTGCATGTATTGCACAGCTGAAGAGCTCGGAGTATGCAGTTGAATGTT
TCGATTATGAAGACACTGTTGAAGATAAGTGA

Coding sequence (CDS) from alignment at NODE_146_length_43567_cov_5.009154:36399..37580+

>Gcaud2549.t1 ID=Gcaud2549.t1|Name=Gcaud2549.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1182bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:36399..37580+ (Gracilaria caudata M_176_S67 male)
ATGCGTTTCGTACAATTCTTGCGTCTTCTCGCgctgctgctgctgctgct
ttctgctgcCGTTCGTCCTGGTGTGGCCGCGTCTTTGTCATGGATTCCGT
CGCTTGTTCGTGAGCAGGATGAACAGGTTTCTATTGCGTACTTCATTCAG
ATTTCGGAATCTACCATCACCATGCTTCCCCGCCTCATTCGCGCCGTGTA
TCACCCTGAAAATACATATGTGATCCACATGGATAAGAAGATTCCCGAAT
GGCAGCGCACTCATGCGAAGACGTCTCTTATGAATGGTGACGAACGATAT
AAGAAAAATGTGCGTGTCATGCAATCTGAGCCTGTTACTTACCGTGGAAT
AAGTATGGTGCTTAATTTGCTCAGTGCCATGCAGGCTGCAAGTGACAGTT
CGAAGGACTGGACGTACTTCATCAACATTAGCGGCAGTGACTACCCACTG
GTGTCTGCAACCAATCAACGCCGGCTTCTGACCACTCAGGACTTCGCAAC
GCGAAGGCGGAGCTTTCTGTCTATCGCGAAACAAGATTGGTGGTCGCAAA
GCAAGGAATACCGTTTTGAACGACTCTTTACAGACACAAGTCTCTCCTTC
AACAGCTCTGAGCATCGCATAGTTGACTCCTATACTGATCAACCAATTGC
CTTTGTGCACAACTTCACGTTCGTGGCAGCAGAGGCATGGATGGTCCTTC
ACCGAGATCTTGTGGATTTCATGCTAACCGGTTCGACCGCAAGACGTATG
CTCCTGGCTTTTGCATATGCGCTCGAGCCAGAGGAGCATTATTTCGCGAC
GCTTGCGTATAATTCTCCAGAGTTCAACGACACGCTCGTGCCACATTCTT
TGAGACACGTCGAATGGGTGCATAACGGTAAACATTCTGGACAGCATCCT
TATTACGTTGATCAGTTGGAGAGCGATGGCAAGACGTTCATGTTTCAAGA
AAAGATCAAGAGGTCTGGTTGTTTCTTCACTCGTAAGATCCGTGAGAAGG
ATTCTCCCATCCTGGATTACATTGACAAGCATATAAATGGAGTGGCCGAC
GACGCTGTAACGGAAGATGTTAAGGATTATGTGGAGTATGTAAGTGGGAA
GCTTGCATGTATTGCACAGCTGAAGAGCTCGGAGTATGCAGTTGAATGTT
TCGATTATGAAGACACTGTTGAAGATAAGTGA