Gcaud2548.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2548.t1
Unique NameGcaud2548.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_146_length_43567_cov_5.009154contigNODE_146_length_43567_cov_5.009154:34928..35688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707660.1
PFAMsTPR_8
Max annot lvl2759|Eukaryota
Evalue1.01e-54
EggNOG OGs2CYTM@1|root,2S4PU@2759|Eukaryota
DescriptionTetratricopeptide repeat
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2548Gcaud2548Gracilaria caudata M_176_S67 malegeneNODE_146_length_43567_cov_5.009154 34928..35688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2548.t1Gcaud2548.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_146_length_43567_cov_5.009154 34928..35688 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2548.t1.stop1Gcaud2548.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_146_length_43567_cov_5.009154 34928..34930 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2548.t1.CDS1Gcaud2548.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_146_length_43567_cov_5.009154 34928..34938 -
Gcaud2548.t1.CDS2Gcaud2548.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_146_length_43567_cov_5.009154 35136..35688 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2548.t1.exon1Gcaud2548.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_146_length_43567_cov_5.009154 34928..34938 -
Gcaud2548.t1.exon2Gcaud2548.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_146_length_43567_cov_5.009154 35136..35688 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2548.t1.intron1Gcaud2548.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_146_length_43567_cov_5.009154 34939..35135 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2548.t1.start1Gcaud2548.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_146_length_43567_cov_5.009154 35686..35688 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2548.t1 ID=Gcaud2548.t1|Name=Gcaud2548.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=188bp
MYNRLVREAPTFAPAYSNRANVLVAGGRYSEAERDYDEALKLAPSDGDAW
VLYVNRGATRLALGRTEDALGDLNDAYRLRGDDQTVLSNRASVYEVLGKW
DNAIRDYQKALKSNDVQPFWIRYALVLFQRNKSFEALSILKRVAAKFPDV
SDVHAALALVYYDRGDIAAAETEWSAVDRPRLFENIQ*
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spliced messenger RNA

>Gcaud2548.t1 ID=Gcaud2548.t1|Name=Gcaud2548.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=564bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:34928..35688- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATAACAGACTTGTTAGGGAGGCACCTACTTTCGCGCCGGCTTATTC
TAATCGCGCGAACGTGTTGGTTGCAGGAGGAAGGTATTCGGAGGCGGAAC
GCGATTATGACGAAGCTTTGAAGCTGGCACCATCGGACGGTGATGCCTGG
GTTCTTTACGTGAATCGCGGGGCGACGCGTTTGGCTCTCGGGCGCACTGA
AGACGCTTTAGGAGATTTGAATGACGCCTATCGCCTTCGTGGGGACGATC
AGACCGTGTTGTCGAATCGTGCCAGTGTTTATGAAGTGTTGGGCAAGTGG
GATAATGCGATCCGTGATTATCAGAAGGCGTTGAAATCAAACGATGTACA
GCCATTTTGGATTCGGTATGCATTGGTTTTGTTCCAGAGGAACAAGAGTT
TTGAAGCACTGTCAATTCTCAAACGTGTTGCGGCTAAGTTTCCGGATGTG
AGTGATGTGCACGCCGCCTTGGCGCTTGTTTACTATGATCGAGGGGATAT
TGCCGCGGCTGAGACCGAGTGGAGCGCCGTAGATCGACCAAGGCTGTTTG
AAAATATACAATAG
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protein sequence of Gcaud2548.t1

>Gcaud2548.t1 ID=Gcaud2548.t1|Name=Gcaud2548.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=188bp
MYNRLVREAPTFAPAYSNRANVLVAGGRYSEAERDYDEALKLAPSDGDAW
VLYVNRGATRLALGRTEDALGDLNDAYRLRGDDQTVLSNRASVYEVLGKW
DNAIRDYQKALKSNDVQPFWIRYALVLFQRNKSFEALSILKRVAAKFPDV
SDVHAALALVYYDRGDIAAAETEWSAVDRPRLFENIQ*
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mRNA from alignment at NODE_146_length_43567_cov_5.009154:34928..35688-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2548.t1 ID=Gcaud2548.t1|Name=Gcaud2548.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=761bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:34928..35688- (Gracilaria caudata M_176_S67 male)
ATGTATAACAGACTTGTTAGGGAGGCACCTACTTTCGCGCCGGCTTATTC
TAATCGCGCGAACGTGTTGGTTGCAGGAGGAAGGTATTCGGAGGCGGAAC
GCGATTATGACGAAGCTTTGAAGCTGGCACCATCGGACGGTGATGCCTGG
GTTCTTTACGTGAATCGCGGGGCGACGCGTTTGGCTCTCGGGCGCACTGA
AGACGCTTTAGGAGATTTGAATGACGCCTATCGCCTTCGTGGGGACGATC
AGACCGTGTTGTCGAATCGTGCCAGTGTTTATGAAGTGTTGGGCAAGTGG
GATAATGCGATCCGTGATTATCAGAAGGCGTTGAAATCAAACGATGTACA
GCCATTTTGGATTCGGTATGCATTGGTTTTGTTCCAGAGGAACAAGAGTT
TTGAAGCACTGTCAATTCTCAAACGTGTTGCGGCTAAGTTTCCGGATGTG
AGTGATGTGCACGCCGCCTTGGCGCTTGTTTACTATGATCGAGGGGATAT
TGCCGCGGCTGAGACCGAGTGGAGCGCCGTAGATCGACCAAGGCTGTTTG
AAAGTAAGTCTTTCTTGAGCGAGGAGCGGAAGTGGCCTCCGCGCGCTATC
AAGACATTGGATAACTTTCGAAATCTCAATCCACAGTGAGAAAAAAGTAA
ATTTTCCTGGACTAACGAAGGATTTGTCCTACCAACTGATATAATTTCGC
TCATTCTCATCCCCATATCTCTTATGGCATACGATCATGTAAATACACAG
ATATACAATAG
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Coding sequence (CDS) from alignment at NODE_146_length_43567_cov_5.009154:34928..35688-

>Gcaud2548.t1 ID=Gcaud2548.t1|Name=Gcaud2548.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=564bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:34928..35688- (Gracilaria caudata M_176_S67 male)
ATGTATAACAGACTTGTTAGGGAGGCACCTACTTTCGCGCCGGCTTATTC
TAATCGCGCGAACGTGTTGGTTGCAGGAGGAAGGTATTCGGAGGCGGAAC
GCGATTATGACGAAGCTTTGAAGCTGGCACCATCGGACGGTGATGCCTGG
GTTCTTTACGTGAATCGCGGGGCGACGCGTTTGGCTCTCGGGCGCACTGA
AGACGCTTTAGGAGATTTGAATGACGCCTATCGCCTTCGTGGGGACGATC
AGACCGTGTTGTCGAATCGTGCCAGTGTTTATGAAGTGTTGGGCAAGTGG
GATAATGCGATCCGTGATTATCAGAAGGCGTTGAAATCAAACGATGTACA
GCCATTTTGGATTCGGTATGCATTGGTTTTGTTCCAGAGGAACAAGAGTT
TTGAAGCACTGTCAATTCTCAAACGTGTTGCGGCTAAGTTTCCGGATGTG
AGTGATGTGCACGCCGCCTTGGCGCTTGTTTACTATGATCGAGGGGATAT
TGCCGCGGCTGAGACCGAGTGGAGCGCCGTAGATCGACCAAGGCTGTTTG
AAAATATACAATAG
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