Gcaud2546.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2546.t1
Unique NameGcaud2546.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length356
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_146_length_43567_cov_5.009154contigNODE_146_length_43567_cov_5.009154:28050..29117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702271.1
Preferred nameDEGS1
PFAMsFA_desaturase,Lipid_DES
Max annot lvl2759|Eukaryota
KEGG rclassRC00824
KEGG koko:K04712,ko:K20028
KEGG ReactionR06519
KEGG Pathwayko00600,ko01100,ko04071,map00600,map01100,map04071
KEGG ModuleM00094,M00099
GOsGO:0000003,GO:0000170,GO:0000212,GO:0000226,GO:0000280,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005886,GO:0005887,GO:0006066,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006643,GO:0006665,GO:0006667,GO:0006670,GO:0006672,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007053,GO:0007140,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008610,GO:0009055,GO:0009058,GO:0009987,GO:0010941,GO:0010942,GO:0012505,GO:0012506,GO:0016006,GO:0016020,GO:0016021,GO:0016043,GO:0016053,GO:0016192,GO:0016491,GO:0016705,GO:0019751,GO:0019752,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022900,GO:0030141,GO:0030148,GO:0030659,GO:0030667,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032504,GO:0032787,GO:0032940,GO:0033559,GO:0034311,GO:0034312,GO:0034641,GO:0035579,GO:0036230,GO:0042119,GO:0042175,GO:0042284,GO:0042581,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043436,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045055,GO:0045321,GO:0046165,GO:0046173,GO:0046394,GO:0046467,GO:0046512,GO:0046513,GO:0046519,GO:0046520,GO:0046903,GO:0048232,GO:0048285,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051225,GO:0051234,GO:0051321,GO:0051704,GO:0055114,GO:0065007,GO:0070925,GO:0070938,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0090306,GO:0097164,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099503,GO:0140013,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1903046
Evalue3.95e-134
EggNOG OGsKOG2987@1|root,KOG2987@2759|Eukaryota
EC1.14.18.5,1.14.19.17,2.3.1.225
Descriptionsphingolipid delta-4 desaturase activity
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2546Gcaud2546Gracilaria caudata M_176_S67 malegeneNODE_146_length_43567_cov_5.009154 28050..29117 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2546.t1.start1Gcaud2546.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_146_length_43567_cov_5.009154 28050..28052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2546.t1.CDS1Gcaud2546.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_146_length_43567_cov_5.009154 28050..29117 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2546.t1.exon1Gcaud2546.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_146_length_43567_cov_5.009154 28050..29117 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2546.t1.stop1Gcaud2546.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_146_length_43567_cov_5.009154 29115..29117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2546.t1Gcaud2546.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_146_length_43567_cov_5.009154 28050..29117 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2546.t1 ID=Gcaud2546.t1|Name=Gcaud2546.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=356bp
MGKGGSSEEVLVRSNLLSTEDAEAIVHRKSGAKHPHADRRSEILSKHPEV
KQLFGTYRGTAVYSLVLVLFHIGLAVLVTHNFPVWVSVLLSYTVGAVVDH
ALWVLIHDATHNLVFKSVAKNRLVLLLCNIPHVFPSAMMFRYYHILHHIE
LNRAHKDPDVPFEWEAKFIGNSPFRKSVWLAFFFIVQALRTAFYTYRIPK
GTELAWMALNWALNVSVHTMLVAYYGWAPLLFLAFASISSIGLHPLGARW
IQEHYPTQPFQATYSYYGIANRFAFAIGYHVEHHDFPSVPWNKLAELKAT
APEYYDTLFSYTSYSELLKDFIFERKWSLANRFEVEREMSEHASPTADAF
TKKER*
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spliced messenger RNA

>Gcaud2546.t1 ID=Gcaud2546.t1|Name=Gcaud2546.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:28050..29117+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAAAGGAGGGTCTTCTGAAGAGGTTCTTGTCCGAAGCAATCTTCT
TTCTACTGAAGATGCGGAGGCTATTGTTCATAGGAAGAGTGGCGCCAAAC
ATCCGCATGCGGATCGCCGAAGCGAGATTTTGAGCAAGCATCCCGAAGTG
AAGCAGCTGTTCGGAACATATCGTGGTACCGCTGTCTACTCTCTCGTGCT
TGTTTTGTTTCACATTGGTCTGGCAGTGCTTGTCACCCACAACTTTCCTG
TATGGGTTAGCGTGTTATTAAGTTATACCGTTGGTGCGGTGGTGGACCAT
GCATTATGGGTATTGATCCATGATGCCACTCATAACCTTGTCTTCAAGAG
CGTTGCCAAGAATAGACTTGTGTTGCTGTTATGTAACATTCCCCATGTAT
TTCCGTCAGCCATGATGTTTCGATACTATCATATTCTTCATCACATCGAA
CTCAATCGAGCGCACAAAGATCCCGACGTTCCTTTCGAATGGGAGGCCAA
GTTTATTGGAAACTCACCGTTTAGAAAGTCCGTGTGGCTCGCATTTTTCT
TTATTGTGCAAGCCTTACGCACCGCGTTTTACACTTATCGAATTCCGAAA
GGGACTGAACTTGCGTGGATGGCGCTTAATTGGGCTCTCAATGTCTCCGT
GCATACCATGCTTGTCGCCTACTATGGATGGGCTCCATTACTGTTTCTTG
CATTTGCTTCAATTTCTAGTATTGGGTTGCATCCTTTGGGCGCTCGTTGG
ATTCAGGAACATTATCCTACACAGCCTTTTCAGGCTACCTATTCGTACTA
CGGAATCGCTAATCGCTTTGCGTTTGCAATTGGTTATCATGTCGAACATC
ACGATTTCCCATCTGTGCCGTGGAATAAGCTTGCTGAATTGAAGGCTACT
GCACCAGAATATTATGATACCTTGTTTTCCTATACCAGTTACTCAGAGTT
GCTTAAAGATTTTATCTTTGAAAGAAAATGGAGTTTGGCAAATCGCTTCG
AGGTTGAACGTGAGATGTCAGAGCATGCATCCCCGACAGCTGATGCTTTC
ACGAAGAAAGAACGATGA
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protein sequence of Gcaud2546.t1

>Gcaud2546.t1 ID=Gcaud2546.t1|Name=Gcaud2546.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=356bp
MGKGGSSEEVLVRSNLLSTEDAEAIVHRKSGAKHPHADRRSEILSKHPEV
KQLFGTYRGTAVYSLVLVLFHIGLAVLVTHNFPVWVSVLLSYTVGAVVDH
ALWVLIHDATHNLVFKSVAKNRLVLLLCNIPHVFPSAMMFRYYHILHHIE
LNRAHKDPDVPFEWEAKFIGNSPFRKSVWLAFFFIVQALRTAFYTYRIPK
GTELAWMALNWALNVSVHTMLVAYYGWAPLLFLAFASISSIGLHPLGARW
IQEHYPTQPFQATYSYYGIANRFAFAIGYHVEHHDFPSVPWNKLAELKAT
APEYYDTLFSYTSYSELLKDFIFERKWSLANRFEVEREMSEHASPTADAF
TKKER*
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mRNA from alignment at NODE_146_length_43567_cov_5.009154:28050..29117+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2546.t1 ID=Gcaud2546.t1|Name=Gcaud2546.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:28050..29117+ (Gracilaria caudata M_176_S67 male)
ATGGGCAAAGGAGGGTCTTCTGAAGAGGTTCTTGTCCGAAGCAATCTTCT
TTCTACTGAAGATGCGGAGGCTATTGTTCATAGGAAGAGTGGCGCCAAAC
ATCCGCATGCGGATCGCCGAAGCGAGATTTTGAGCAAGCATCCCGAAGTG
AAGCAGCTGTTCGGAACATATCGTGGTACCGCTGTCTACTCTCTCGTGCT
TGTTTTGTTTCACATTGGTCTGGCAGTGCTTGTCACCCACAACTTTCCTG
TATGGGTTAGCGTGTTATTAAGTTATACCGTTGGTGCGGTGGTGGACCAT
GCATTATGGGTATTGATCCATGATGCCACTCATAACCTTGTCTTCAAGAG
CGTTGCCAAGAATAGACTTGTGTTGCTGTTATGTAACATTCCCCATGTAT
TTCCGTCAGCCATGATGTTTCGATACTATCATATTCTTCATCACATCGAA
CTCAATCGAGCGCACAAAGATCCCGACGTTCCTTTCGAATGGGAGGCCAA
GTTTATTGGAAACTCACCGTTTAGAAAGTCCGTGTGGCTCGCATTTTTCT
TTATTGTGCAAGCCTTACGCACCGCGTTTTACACTTATCGAATTCCGAAA
GGGACTGAACTTGCGTGGATGGCGCTTAATTGGGCTCTCAATGTCTCCGT
GCATACCATGCTTGTCGCCTACTATGGATGGGCTCCATTACTGTTTCTTG
CATTTGCTTCAATTTCTAGTATTGGGTTGCATCCTTTGGGCGCTCGTTGG
ATTCAGGAACATTATCCTACACAGCCTTTTCAGGCTACCTATTCGTACTA
CGGAATCGCTAATCGCTTTGCGTTTGCAATTGGTTATCATGTCGAACATC
ACGATTTCCCATCTGTGCCGTGGAATAAGCTTGCTGAATTGAAGGCTACT
GCACCAGAATATTATGATACCTTGTTTTCCTATACCAGTTACTCAGAGTT
GCTTAAAGATTTTATCTTTGAAAGAAAATGGAGTTTGGCAAATCGCTTCG
AGGTTGAACGTGAGATGTCAGAGCATGCATCCCCGACAGCTGATGCTTTC
ACGAAGAAAGAACGATGA
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Coding sequence (CDS) from alignment at NODE_146_length_43567_cov_5.009154:28050..29117+

>Gcaud2546.t1 ID=Gcaud2546.t1|Name=Gcaud2546.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1068bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:28050..29117+ (Gracilaria caudata M_176_S67 male)
ATGGGCAAAGGAGGGTCTTCTGAAGAGGTTCTTGTCCGAAGCAATCTTCT
TTCTACTGAAGATGCGGAGGCTATTGTTCATAGGAAGAGTGGCGCCAAAC
ATCCGCATGCGGATCGCCGAAGCGAGATTTTGAGCAAGCATCCCGAAGTG
AAGCAGCTGTTCGGAACATATCGTGGTACCGCTGTCTACTCTCTCGTGCT
TGTTTTGTTTCACATTGGTCTGGCAGTGCTTGTCACCCACAACTTTCCTG
TATGGGTTAGCGTGTTATTAAGTTATACCGTTGGTGCGGTGGTGGACCAT
GCATTATGGGTATTGATCCATGATGCCACTCATAACCTTGTCTTCAAGAG
CGTTGCCAAGAATAGACTTGTGTTGCTGTTATGTAACATTCCCCATGTAT
TTCCGTCAGCCATGATGTTTCGATACTATCATATTCTTCATCACATCGAA
CTCAATCGAGCGCACAAAGATCCCGACGTTCCTTTCGAATGGGAGGCCAA
GTTTATTGGAAACTCACCGTTTAGAAAGTCCGTGTGGCTCGCATTTTTCT
TTATTGTGCAAGCCTTACGCACCGCGTTTTACACTTATCGAATTCCGAAA
GGGACTGAACTTGCGTGGATGGCGCTTAATTGGGCTCTCAATGTCTCCGT
GCATACCATGCTTGTCGCCTACTATGGATGGGCTCCATTACTGTTTCTTG
CATTTGCTTCAATTTCTAGTATTGGGTTGCATCCTTTGGGCGCTCGTTGG
ATTCAGGAACATTATCCTACACAGCCTTTTCAGGCTACCTATTCGTACTA
CGGAATCGCTAATCGCTTTGCGTTTGCAATTGGTTATCATGTCGAACATC
ACGATTTCCCATCTGTGCCGTGGAATAAGCTTGCTGAATTGAAGGCTACT
GCACCAGAATATTATGATACCTTGTTTTCCTATACCAGTTACTCAGAGTT
GCTTAAAGATTTTATCTTTGAAAGAAAATGGAGTTTGGCAAATCGCTTCG
AGGTTGAACGTGAGATGTCAGAGCATGCATCCCCGACAGCTGATGCTTTC
ACGAAGAAAGAACGATGA
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