Gcaud2545.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2545.t1
Unique Name	Gcaud2545.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	425

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_146_length_43567_cov_5.009154	contig	NODE_146_length_43567_cov_5.009154:26196..27470 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	946362.XP_004995239.1
PFAMs	Pyr_redox_2
Max annot lvl	2759\|Eukaryota
Evalue	6.03e-59
EggNOG OGs	COG1252@1\|root,2S15X@2759\|Eukaryota
Description	Pyridine nucleotide-disulphide oxidoreductase
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2545	Gcaud2545	Gracilaria caudata M_176_S67 male	gene	NODE_146_length_43567_cov_5.009154 26196..27470 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2545.t1.stop1	Gcaud2545.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_146_length_43567_cov_5.009154 26196..26198 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2545.t1.CDS1	Gcaud2545.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_146_length_43567_cov_5.009154 26196..27470 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2545.t1.exon1	Gcaud2545.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_146_length_43567_cov_5.009154 26196..27470 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2545.t1.start1	Gcaud2545.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_146_length_43567_cov_5.009154 27468..27470 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2545.t1	Gcaud2545.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_146_length_43567_cov_5.009154 26196..27470 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_146_length_43567_cov_5.009154:26196..27470-
coding sequence from alignment at NODE_146_length_43567_cov_5.009154:26196..27470-

mRNA sequence

>Gcaud2545.t1 ID=Gcaud2545.t1|Name=Gcaud2545.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=425bp
MLISESPVSVYSGMLPAVIAGLVPHQNSVVRLQPLCEAHNFHFVQGKVTR
IDPNTRRVFFHAPHSTLQCSLHYDVLSINIGSRTRELMHYTPAPEQQTLP
LVVRTRPILQLESTVCNFERLAKDAGLKCALVVVVGAGAAGIELALALEA
RLKRSIGDVMVTLVSKNDAISSQFGRMTGAAVSAECRKRAIQLAIGRDVL
SVDAGVVRLDDDTKLSYDMVVLATGAASHDVSRNFGLSTDEDGWILVDAS
LKCRGHTDIFAAGDCVSFDKLFGDGFPPKAGVYAVREGPILTHNLQQRLN
RSQKLHEFAPQASFLSLLSTGDGRGIGSKHGLAFKGTWVYRMKNFIDERW
QQRFRVVPDKEPSGVQEFERLFDGQAAEGAALLLCSEDINKHDNFERQLS
VLRRMDGDDAFREEVLRCAKGMWA*

spliced messenger RNA

>Gcaud2545.t1 ID=Gcaud2545.t1|Name=Gcaud2545.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:26196..27470- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCATTTCAGAGTCACCAGTGTCCGTGTACAGTGGCATGCTTCCCGC
CGTCATCGCCGGTCTCGTCCCGCATCAAAACTCGGTCGTTCGTCTTCAAC
CGCTCTGTGAGGCGCACAATTTTCATTTCGTGCAAGGAAAAGTGACGCGA
ATCGACCCAAACACGAGGCGAGTGTTCTTTCACGCACCACATTCTACGTT
ACAATGCTCGTTACATTATGATGTCCTTTCCATAAACATCGGGAGTCGCA
CTCGAGAGCTGATGCACTATACCCCTGCACCGGAACAACAGACGTTGCCG
CTCGTTGTTCGCACGCGTCCGATTTTGCAGCTTGAGAGTACTGTATGTAA
CTTCGAGCGATTGGCGAAAGACGCCGGTCTCAAGTGCGCACTGGTGGTGG
TGGTCGGTGCTGGAGCGGCTGGTATAGAACTCGCACTCGCGCTGGAGGCA
CGATTAAAACGTTCTATAGGCGATGTAATGGTCACATTGGTGTCCAAAAA
TGACGCAATCTCATCACAGTTCGGACGCATGACAGGCGCTGCTGTCTCGG
CTGAGTGTAGAAAACGAGCCATTCAGCTGGCGATTGGACGCGATGTATTA
TCTGTGGACGCCGGTGTGGTGCGATTGGATGACGATACAAAGCTGAGTTA
TGACATGGTTGTGTTGGCTACTGGTGCTGCTTCACATGACGTTTCAAGAA
ACTTCGGCTTGTCAACTGATGAGGACGGATGGATCTTGGTTGATGCAAGT
CTGAAGTGTAGAGGACATACTGATATCTTTGCGGCTGGGGATTGCGTTTC
ATTTGATAAGCTATTTGGTGACGGTTTTCCTCCAAAGGCGGGTGTGTACG
CCGTGAGAGAGGGCCCGATCCTGACCCACAATCTGCAACAAAGGCTGAAC
AGGTCGCAAAAACTGCATGAGTTTGCGCCGCAGGCTTCGTTTTTATCGCT
CTTATCAACGGGGGATGGCAGGGGTATTGGCTCGAAGCACGGGTTGGCAT
TCAAAGGAACGTGGGTTTATCGAATGAAGAATTTCATTGACGAACGATGG
CAACAACGATTTCGAGTTGTGCCTGATAAAGAGCCGAGTGGGGTACAAGA
ATTCGAGAGATTGTTTGATGGCCAAGCGGCGGAAGGCGCGGCTTTGTTGC
TTTGCTCGGAGGATATTAACAAGCATGACAATTTTGAAAGGCAGCTTTCT
GTGCTCCGCAGAATGGATGGCGATGATGCTTTTCGCGAAGAGGTGTTACG
CTGCGCAAAGGGTATGTGGGCCTAG

protein sequence of Gcaud2545.t1

>Gcaud2545.t1 ID=Gcaud2545.t1|Name=Gcaud2545.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=425bp
MLISESPVSVYSGMLPAVIAGLVPHQNSVVRLQPLCEAHNFHFVQGKVTR
IDPNTRRVFFHAPHSTLQCSLHYDVLSINIGSRTRELMHYTPAPEQQTLP
LVVRTRPILQLESTVCNFERLAKDAGLKCALVVVVGAGAAGIELALALEA
RLKRSIGDVMVTLVSKNDAISSQFGRMTGAAVSAECRKRAIQLAIGRDVL
SVDAGVVRLDDDTKLSYDMVVLATGAASHDVSRNFGLSTDEDGWILVDAS
LKCRGHTDIFAAGDCVSFDKLFGDGFPPKAGVYAVREGPILTHNLQQRLN
RSQKLHEFAPQASFLSLLSTGDGRGIGSKHGLAFKGTWVYRMKNFIDERW
QQRFRVVPDKEPSGVQEFERLFDGQAAEGAALLLCSEDINKHDNFERQLS
VLRRMDGDDAFREEVLRCAKGMWA*

mRNA from alignment at NODE_146_length_43567_cov_5.009154:26196..27470-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2545.t1 ID=Gcaud2545.t1|Name=Gcaud2545.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:26196..27470- (Gracilaria caudata M_176_S67 male)
ATGCTCATTTCAGAGTCACCAGTGTCCGTGTACAGTGGCATGCTTCCCGC
CGTCATCGCCGGTCTCGTCCCGCATCAAAACTCGGTCGTTCGTCTTCAAC
CGCTCTGTGAGGCGCACAATTTTCATTTCGTGCAAGGAAAAGTGACGCGA
ATCGACCCAAACACGAGGCGAGTGTTCTTTCACGCACCACATTCTACGTT
ACAATGCTCGTTACATTATGATGTCCTTTCCATAAACATCGGGAGTCGCA
CTCGAGAGCTGATGCACTATACCCCTGCACCGGAACAACAGACGTTGCCG
CTCGTTGTTCGCACGCGTCCGATTTTGCAGCTTGAGAGTACTGTATGTAA
CTTCGAGCGATTGGCGAAAGACGCCGGTCTCAAGTGCGCACTGGTGGTGG
TGGTCGGTGCTGGAGCGGCTGGTATAGAACTCGCACTCGCGCTGGAGGCA
CGATTAAAACGTTCTATAGGCGATGTAATGGTCACATTGGTGTCCAAAAA
TGACGCAATCTCATCACAGTTCGGACGCATGACAGGCGCTGCTGTCTCGG
CTGAGTGTAGAAAACGAGCCATTCAGCTGGCGATTGGACGCGATGTATTA
TCTGTGGACGCCGGTGTGGTGCGATTGGATGACGATACAAAGCTGAGTTA
TGACATGGTTGTGTTGGCTACTGGTGCTGCTTCACATGACGTTTCAAGAA
ACTTCGGCTTGTCAACTGATGAGGACGGATGGATCTTGGTTGATGCAAGT
CTGAAGTGTAGAGGACATACTGATATCTTTGCGGCTGGGGATTGCGTTTC
ATTTGATAAGCTATTTGGTGACGGTTTTCCTCCAAAGGCGGGTGTGTACG
CCGTGAGAGAGGGCCCGATCCTGACCCACAATCTGCAACAAAGGCTGAAC
AGGTCGCAAAAACTGCATGAGTTTGCGCCGCAGGCTTCGTTTTTATCGCT
CTTATCAACGGGGGATGGCAGGGGTATTGGCTCGAAGCACGGGTTGGCAT
TCAAAGGAACGTGGGTTTATCGAATGAAGAATTTCATTGACGAACGATGG
CAACAACGATTTCGAGTTGTGCCTGATAAAGAGCCGAGTGGGGTACAAGA
ATTCGAGAGATTGTTTGATGGCCAAGCGGCGGAAGGCGCGGCTTTGTTGC
TTTGCTCGGAGGATATTAACAAGCATGACAATTTTGAAAGGCAGCTTTCT
GTGCTCCGCAGAATGGATGGCGATGATGCTTTTCGCGAAGAGGTGTTACG
CTGCGCAAAGGGTATGTGGGCCTAG

Coding sequence (CDS) from alignment at NODE_146_length_43567_cov_5.009154:26196..27470-

>Gcaud2545.t1 ID=Gcaud2545.t1|Name=Gcaud2545.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1275bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:26196..27470- (Gracilaria caudata M_176_S67 male)
ATGCTCATTTCAGAGTCACCAGTGTCCGTGTACAGTGGCATGCTTCCCGC
CGTCATCGCCGGTCTCGTCCCGCATCAAAACTCGGTCGTTCGTCTTCAAC
CGCTCTGTGAGGCGCACAATTTTCATTTCGTGCAAGGAAAAGTGACGCGA
ATCGACCCAAACACGAGGCGAGTGTTCTTTCACGCACCACATTCTACGTT
ACAATGCTCGTTACATTATGATGTCCTTTCCATAAACATCGGGAGTCGCA
CTCGAGAGCTGATGCACTATACCCCTGCACCGGAACAACAGACGTTGCCG
CTCGTTGTTCGCACGCGTCCGATTTTGCAGCTTGAGAGTACTGTATGTAA
CTTCGAGCGATTGGCGAAAGACGCCGGTCTCAAGTGCGCACTGGTGGTGG
TGGTCGGTGCTGGAGCGGCTGGTATAGAACTCGCACTCGCGCTGGAGGCA
CGATTAAAACGTTCTATAGGCGATGTAATGGTCACATTGGTGTCCAAAAA
TGACGCAATCTCATCACAGTTCGGACGCATGACAGGCGCTGCTGTCTCGG
CTGAGTGTAGAAAACGAGCCATTCAGCTGGCGATTGGACGCGATGTATTA
TCTGTGGACGCCGGTGTGGTGCGATTGGATGACGATACAAAGCTGAGTTA
TGACATGGTTGTGTTGGCTACTGGTGCTGCTTCACATGACGTTTCAAGAA
ACTTCGGCTTGTCAACTGATGAGGACGGATGGATCTTGGTTGATGCAAGT
CTGAAGTGTAGAGGACATACTGATATCTTTGCGGCTGGGGATTGCGTTTC
ATTTGATAAGCTATTTGGTGACGGTTTTCCTCCAAAGGCGGGTGTGTACG
CCGTGAGAGAGGGCCCGATCCTGACCCACAATCTGCAACAAAGGCTGAAC
AGGTCGCAAAAACTGCATGAGTTTGCGCCGCAGGCTTCGTTTTTATCGCT
CTTATCAACGGGGGATGGCAGGGGTATTGGCTCGAAGCACGGGTTGGCAT
TCAAAGGAACGTGGGTTTATCGAATGAAGAATTTCATTGACGAACGATGG
CAACAACGATTTCGAGTTGTGCCTGATAAAGAGCCGAGTGGGGTACAAGA
ATTCGAGAGATTGTTTGATGGCCAAGCGGCGGAAGGCGCGGCTTTGTTGC
TTTGCTCGGAGGATATTAACAAGCATGACAATTTTGAAAGGCAGCTTTCT
GTGCTCCGCAGAATGGATGGCGATGATGCTTTTCGCGAAGAGGTGTTACG
CTGCGCAAAGGGTATGTGGGCCTAG