Gcaud2542.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2542.t1
Unique Name	Gcaud2542.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	672

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_146_length_43567_cov_5.009154	contig	NODE_146_length_43567_cov_5.009154:21246..23261 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10228.TriadP60794
Preferred name	NCAPH
PFAMs	Cnd2
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00537,RC00983
KEGG ko	ko:K01053,ko:K06676
KEGG Reaction	R01519,R02933,R03751
KEGG Pathway	ko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko04111,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220,map04111
KEGG Module	M00129
GOs	GO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0001655,GO:0001671,GO:0001700,GO:0002009,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007143,GO:0007275,GO:0007276,GO:0007292,GO:0007399,GO:0007422,GO:0007424,GO:0007439,GO:0007442,GO:0007443,GO:0008047,GO:0008150,GO:0008152,GO:0008258,GO:0009060,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009987,GO:0010032,GO:0010468,GO:0010605,GO:0010629,GO:0010911,GO:0010912,GO:0015980,GO:0016043,GO:0016321,GO:0016458,GO:0016999,GO:0017144,GO:0019222,GO:0019752,GO:0019899,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030234,GO:0030261,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032781,GO:0032991,GO:0035239,GO:0035295,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043462,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044547,GO:0044703,GO:0044815,GO:0045132,GO:0045333,GO:0048285,GO:0048513,GO:0048519,GO:0048546,GO:0048565,GO:0048567,GO:0048598,GO:0048609,GO:0048619,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0051276,GO:0051304,GO:0051306,GO:0051307,GO:0051309,GO:0051321,GO:0051336,GO:0051345,GO:0051704,GO:0055114,GO:0055123,GO:0060255,GO:0060429,GO:0060541,GO:0060562,GO:0060589,GO:0060590,GO:0061326,GO:0061333,GO:0061525,GO:0065007,GO:0065009,GO:0070013,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0072001,GO:0072002,GO:0072350,GO:0072586,GO:0072587,GO:0098687,GO:0098772,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047,GO:2000371,GO:2000373
Evalue	6.49e-75
EggNOG OGs	COG5229@1\|root,KOG2328@2759\|Eukaryota,38HEG@33154\|Opisthokonta,3BF8V@33208\|Metazoa
EC	3.1.1.17
Description	DNA topoisomerase (ATP-hydrolyzing) activator activity
COG category	BD
BRITE	ko00000,ko00001,ko00002,ko01000,ko03036,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2542	Gcaud2542	Gracilaria caudata M_176_S67 male	gene	NODE_146_length_43567_cov_5.009154 21246..23261 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2542.t1.start1	Gcaud2542.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_146_length_43567_cov_5.009154 21246..21248 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2542.t1.CDS1	Gcaud2542.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_146_length_43567_cov_5.009154 21246..23261 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2542.t1.exon1	Gcaud2542.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_146_length_43567_cov_5.009154 21246..23261 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2542.t1.stop1	Gcaud2542.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_146_length_43567_cov_5.009154 23259..23261 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2542.t1	Gcaud2542.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_146_length_43567_cov_5.009154 21246..23261 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_146_length_43567_cov_5.009154:21246..23261+
coding sequence from alignment at NODE_146_length_43567_cov_5.009154:21246..23261+

mRNA sequence

>Gcaud2542.t1 ID=Gcaud2542.t1|Name=Gcaud2542.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=672bp
MYSATIKLCQDNKINARNTWTLNLIDYMSMLVRTDTSGNEVARTMCFEDE
ATHQSDNLPTGTNFQLAGVTLDAGVKIYCSRVDSVHTNAFKVLGGLSRSG
NQDGTDLDGSGEAAEEGREGEGRKQRRHGRRTGNVTLETNLGNITSQRLE
TDLAVDPLFQKMSAAFDEGGASGMLMNNLPIGPKAQIIFDSGETADYLVL
LDDEHQNGAEGDSEGLTYDVSKWLPEQSVTEEDSICGPFLRYFQSKQTDV
DTENDSRGTRNESLDPSNSGNENSDVLEHNFGYDDDDFQDHADIGVLPAS
DVPLDLPEGEDHDDVTLGATSVTNNQQMEGGAMAIRRGSVDLVEAGVTLV
DNPDYSYFDANALVGWAGPTHWSFKASNTSISAGDNAQKPAKKRTRKSRD
TNAMLLDFSLDAPEIDFAAKFAPASRESLIQMSASVRNGFSKKKVTLPED
HHLSIEALCSLFLRPNTYVKPNGNLTNKVGHESEISEGPNWYDFDNPCDK
ENFVGGDPNMLEDFSADHFDDSFEADEDVGMELLAEPTRVEKIDINYAKV
AKKVDVRKLKAGIWTKLCGDQNEEDSGRGEGEEGYGHKSGSASNSLPDVR
TGAAQRLQTIVSNIPSIVPPTSLPDVSLPYVFICLLHLANEKQLRITQAE
DNKLTDLIVKAEEQTDGPTVS*

spliced messenger RNA

>Gcaud2542.t1 ID=Gcaud2542.t1|Name=Gcaud2542.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2016bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:21246..23261+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATTCTGCAACAATCAAGTTGTGTCAAGATAATAAGATCAATGCGCG
AAACACATGGACATTGAATTTAATTGATTACATGTCTATGTTGGTGAGGA
CGGACACGTCTGGCAACGAGGTGGCAAGGACGATGTGCTTTGAGGATGAG
GCCACCCATCAGTCCGATAATCTTCCCACTGGAACTAACTTTCAACTGGC
TGGGGTTACGTTGGATGCTGGAGTCAAAATTTACTGCTCTCGCGTCGACT
CGGTGCATACGAATGCTTTCAAAGTATTGGGCGGCCTATCGAGAAGTGGA
AATCAGGATGGGACAGATCTCGATGGGTCTGGCGAAGCTGCGGAAGAAGG
TCGGGAAGGAGAAGGAAGAAAACAACGAAGGCACGGGAGAAGGACTGGTA
ATGTTACCTTGGAGACCAACCTCGGAAATATTACCTCTCAGCGACTGGAA
ACAGACCTTGCTGTCGATCCCCTGTTTCAGAAAATGTCAGCTGCTTTTGA
TGAAGGTGGTGCTTCAGGGATGCTAATGAACAACTTGCCAATTGGACCAA
AAGCACAGATCATTTTTGACAGTGGAGAAACTGCGGATTATCTGGTGCTT
CTAGACGATGAACATCAAAATGGCGCGGAAGGAGACTCGGAGGGCTTGAC
GTATGATGTTTCGAAGTGGTTACCGGAGCAATCAGTCACCGAAGAAGATA
GCATTTGTGGACCGTTTCTTCGTTATTTTCAGTCTAAACAAACTGATGTA
GACACTGAGAACGACTCCCGGGGAACGAGAAACGAAAGCCTTGATCCTAG
CAATTCAGGTAATGAGAACTCTGATGTTCTAGAGCACAACTTCGGCTATG
ACGACGACGACTTCCAAGATCACGCTGATATAGGAGTGCTACCAGCTAGT
GATGTGCCCTTGGATTTACCGGAAGGTGAAGACCATGATGACGTTACGTT
GGGAGCAACTTCTGTCACTAATAACCAGCAAATGGAGGGTGGTGCCATGG
CAATTCGACGGGGAAGCGTGGATCTCGTAGAGGCTGGCGTGACTCTAGTT
GACAACCCAGATTACTCATATTTTGACGCTAATGCGTTGGTAGGGTGGGC
CGGTCCAACGCATTGGAGTTTCAAAGCATCAAACACATCGATTTCAGCAG
GTGACAATGCTCAGAAGCCCGCAAAGAAGAGAACCAGGAAATCGCGAGAC
ACGAATGCGATGCTGTTAGACTTTTCCCTAGATGCGCCCGAGATTGACTT
CGCAGCGAAGTTCGCTCCGGCCTCAAGGGAATCTCTGATTCAGATGTCCG
CTTCTGTGCGAAACGGGTTCTCAAAGAAGAAAGTAACATTGCCTGAGGAT
CATCATCTCTCCATTGAAGCCCTTTGTTCCCTGTTTCTCAGACCAAACAC
GTACGTTAAGCCTAACGGAAACTTGACAAATAAGGTCGGACACGAATCTG
AGATATCCGAAGGGCCTAACTGGTACGATTTCGATAACCCCTGTGATAAA
GAGAACTTTGTTGGTGGAGATCCAAACATGTTGGAAGACTTTTCCGCGGA
CCACTTTGACGACAGTTTTGAAGCGGACGAAGACGTTGGCATGGAACTCC
TCGCTGAACCAACTCGTGTTGAAAAAATTGACATCAACTACGCAAAGGTG
GCGAAGAAAGTGGACGTACGGAAACTGAAGGCCGGGATTTGGACAAAGCT
GTGTGGAGACCAGAACGAGGAAGATTCAGGCCGTGGCGAAGGTGAAGAAG
GTTACGGTCACAAGTCTGGGAGTGCTTCAAACTCCTTACCAGACGTGAGA
ACCGGTGCAGCGCAGCGACTTCAAACAATAGTTTCAAACATTCCGTCAAT
CGTTCCGCCCACTTCGCTACCAGATGTGTCTCTGCCCTACGTGTTTATAT
GTTTGCTCCATTTGGCTAACGAAAAGCAGCTAAGAATAACGCAAGCCGAG
GACAACAAGTTGACAGACCTCATCGTGAAGGCTGAAGAGCAGACTGATGG
GCCCACCGTTTCTTGA

protein sequence of Gcaud2542.t1

>Gcaud2542.t1 ID=Gcaud2542.t1|Name=Gcaud2542.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=672bp
MYSATIKLCQDNKINARNTWTLNLIDYMSMLVRTDTSGNEVARTMCFEDE
ATHQSDNLPTGTNFQLAGVTLDAGVKIYCSRVDSVHTNAFKVLGGLSRSG
NQDGTDLDGSGEAAEEGREGEGRKQRRHGRRTGNVTLETNLGNITSQRLE
TDLAVDPLFQKMSAAFDEGGASGMLMNNLPIGPKAQIIFDSGETADYLVL
LDDEHQNGAEGDSEGLTYDVSKWLPEQSVTEEDSICGPFLRYFQSKQTDV
DTENDSRGTRNESLDPSNSGNENSDVLEHNFGYDDDDFQDHADIGVLPAS
DVPLDLPEGEDHDDVTLGATSVTNNQQMEGGAMAIRRGSVDLVEAGVTLV
DNPDYSYFDANALVGWAGPTHWSFKASNTSISAGDNAQKPAKKRTRKSRD
TNAMLLDFSLDAPEIDFAAKFAPASRESLIQMSASVRNGFSKKKVTLPED
HHLSIEALCSLFLRPNTYVKPNGNLTNKVGHESEISEGPNWYDFDNPCDK
ENFVGGDPNMLEDFSADHFDDSFEADEDVGMELLAEPTRVEKIDINYAKV
AKKVDVRKLKAGIWTKLCGDQNEEDSGRGEGEEGYGHKSGSASNSLPDVR
TGAAQRLQTIVSNIPSIVPPTSLPDVSLPYVFICLLHLANEKQLRITQAE
DNKLTDLIVKAEEQTDGPTVS*

mRNA from alignment at NODE_146_length_43567_cov_5.009154:21246..23261+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2542.t1 ID=Gcaud2542.t1|Name=Gcaud2542.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2016bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:21246..23261+ (Gracilaria caudata M_176_S67 male)
ATGTATTCTGCAACAATCAAGTTGTGTCAAGATAATAAGATCAATGCGCG
AAACACATGGACATTGAATTTAATTGATTACATGTCTATGTTGGTGAGGA
CGGACACGTCTGGCAACGAGGTGGCAAGGACGATGTGCTTTGAGGATGAG
GCCACCCATCAGTCCGATAATCTTCCCACTGGAACTAACTTTCAACTGGC
TGGGGTTACGTTGGATGCTGGAGTCAAAATTTACTGCTCTCGCGTCGACT
CGGTGCATACGAATGCTTTCAAAGTATTGGGCGGCCTATCGAGAAGTGGA
AATCAGGATGGGACAGATCTCGATGGGTCTGGCGAAGCTGCGGAAGAAGG
TCGGGAAGGAGAAGGAAGAAAACAACGAAGGCACGGGAGAAGGACTGGTA
ATGTTACCTTGGAGACCAACCTCGGAAATATTACCTCTCAGCGACTGGAA
ACAGACCTTGCTGTCGATCCCCTGTTTCAGAAAATGTCAGCTGCTTTTGA
TGAAGGTGGTGCTTCAGGGATGCTAATGAACAACTTGCCAATTGGACCAA
AAGCACAGATCATTTTTGACAGTGGAGAAACTGCGGATTATCTGGTGCTT
CTAGACGATGAACATCAAAATGGCGCGGAAGGAGACTCGGAGGGCTTGAC
GTATGATGTTTCGAAGTGGTTACCGGAGCAATCAGTCACCGAAGAAGATA
GCATTTGTGGACCGTTTCTTCGTTATTTTCAGTCTAAACAAACTGATGTA
GACACTGAGAACGACTCCCGGGGAACGAGAAACGAAAGCCTTGATCCTAG
CAATTCAGGTAATGAGAACTCTGATGTTCTAGAGCACAACTTCGGCTATG
ACGACGACGACTTCCAAGATCACGCTGATATAGGAGTGCTACCAGCTAGT
GATGTGCCCTTGGATTTACCGGAAGGTGAAGACCATGATGACGTTACGTT
GGGAGCAACTTCTGTCACTAATAACCAGCAAATGGAGGGTGGTGCCATGG
CAATTCGACGGGGAAGCGTGGATCTCGTAGAGGCTGGCGTGACTCTAGTT
GACAACCCAGATTACTCATATTTTGACGCTAATGCGTTGGTAGGGTGGGC
CGGTCCAACGCATTGGAGTTTCAAAGCATCAAACACATCGATTTCAGCAG
GTGACAATGCTCAGAAGCCCGCAAAGAAGAGAACCAGGAAATCGCGAGAC
ACGAATGCGATGCTGTTAGACTTTTCCCTAGATGCGCCCGAGATTGACTT
CGCAGCGAAGTTCGCTCCGGCCTCAAGGGAATCTCTGATTCAGATGTCCG
CTTCTGTGCGAAACGGGTTCTCAAAGAAGAAAGTAACATTGCCTGAGGAT
CATCATCTCTCCATTGAAGCCCTTTGTTCCCTGTTTCTCAGACCAAACAC
GTACGTTAAGCCTAACGGAAACTTGACAAATAAGGTCGGACACGAATCTG
AGATATCCGAAGGGCCTAACTGGTACGATTTCGATAACCCCTGTGATAAA
GAGAACTTTGTTGGTGGAGATCCAAACATGTTGGAAGACTTTTCCGCGGA
CCACTTTGACGACAGTTTTGAAGCGGACGAAGACGTTGGCATGGAACTCC
TCGCTGAACCAACTCGTGTTGAAAAAATTGACATCAACTACGCAAAGGTG
GCGAAGAAAGTGGACGTACGGAAACTGAAGGCCGGGATTTGGACAAAGCT
GTGTGGAGACCAGAACGAGGAAGATTCAGGCCGTGGCGAAGGTGAAGAAG
GTTACGGTCACAAGTCTGGGAGTGCTTCAAACTCCTTACCAGACGTGAGA
ACCGGTGCAGCGCAGCGACTTCAAACAATAGTTTCAAACATTCCGTCAAT
CGTTCCGCCCACTTCGCTACCAGATGTGTCTCTGCCCTACGTGTTTATAT
GTTTGCTCCATTTGGCTAACGAAAAGCAGCTAAGAATAACGCAAGCCGAG
GACAACAAGTTGACAGACCTCATCGTGAAGGCTGAAGAGCAGACTGATGG
GCCCACCGTTTCTTGA

Coding sequence (CDS) from alignment at NODE_146_length_43567_cov_5.009154:21246..23261+

>Gcaud2542.t1 ID=Gcaud2542.t1|Name=Gcaud2542.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2016bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:21246..23261+ (Gracilaria caudata M_176_S67 male)
ATGTATTCTGCAACAATCAAGTTGTGTCAAGATAATAAGATCAATGCGCG
AAACACATGGACATTGAATTTAATTGATTACATGTCTATGTTGGTGAGGA
CGGACACGTCTGGCAACGAGGTGGCAAGGACGATGTGCTTTGAGGATGAG
GCCACCCATCAGTCCGATAATCTTCCCACTGGAACTAACTTTCAACTGGC
TGGGGTTACGTTGGATGCTGGAGTCAAAATTTACTGCTCTCGCGTCGACT
CGGTGCATACGAATGCTTTCAAAGTATTGGGCGGCCTATCGAGAAGTGGA
AATCAGGATGGGACAGATCTCGATGGGTCTGGCGAAGCTGCGGAAGAAGG
TCGGGAAGGAGAAGGAAGAAAACAACGAAGGCACGGGAGAAGGACTGGTA
ATGTTACCTTGGAGACCAACCTCGGAAATATTACCTCTCAGCGACTGGAA
ACAGACCTTGCTGTCGATCCCCTGTTTCAGAAAATGTCAGCTGCTTTTGA
TGAAGGTGGTGCTTCAGGGATGCTAATGAACAACTTGCCAATTGGACCAA
AAGCACAGATCATTTTTGACAGTGGAGAAACTGCGGATTATCTGGTGCTT
CTAGACGATGAACATCAAAATGGCGCGGAAGGAGACTCGGAGGGCTTGAC
GTATGATGTTTCGAAGTGGTTACCGGAGCAATCAGTCACCGAAGAAGATA
GCATTTGTGGACCGTTTCTTCGTTATTTTCAGTCTAAACAAACTGATGTA
GACACTGAGAACGACTCCCGGGGAACGAGAAACGAAAGCCTTGATCCTAG
CAATTCAGGTAATGAGAACTCTGATGTTCTAGAGCACAACTTCGGCTATG
ACGACGACGACTTCCAAGATCACGCTGATATAGGAGTGCTACCAGCTAGT
GATGTGCCCTTGGATTTACCGGAAGGTGAAGACCATGATGACGTTACGTT
GGGAGCAACTTCTGTCACTAATAACCAGCAAATGGAGGGTGGTGCCATGG
CAATTCGACGGGGAAGCGTGGATCTCGTAGAGGCTGGCGTGACTCTAGTT
GACAACCCAGATTACTCATATTTTGACGCTAATGCGTTGGTAGGGTGGGC
CGGTCCAACGCATTGGAGTTTCAAAGCATCAAACACATCGATTTCAGCAG
GTGACAATGCTCAGAAGCCCGCAAAGAAGAGAACCAGGAAATCGCGAGAC
ACGAATGCGATGCTGTTAGACTTTTCCCTAGATGCGCCCGAGATTGACTT
CGCAGCGAAGTTCGCTCCGGCCTCAAGGGAATCTCTGATTCAGATGTCCG
CTTCTGTGCGAAACGGGTTCTCAAAGAAGAAAGTAACATTGCCTGAGGAT
CATCATCTCTCCATTGAAGCCCTTTGTTCCCTGTTTCTCAGACCAAACAC
GTACGTTAAGCCTAACGGAAACTTGACAAATAAGGTCGGACACGAATCTG
AGATATCCGAAGGGCCTAACTGGTACGATTTCGATAACCCCTGTGATAAA
GAGAACTTTGTTGGTGGAGATCCAAACATGTTGGAAGACTTTTCCGCGGA
CCACTTTGACGACAGTTTTGAAGCGGACGAAGACGTTGGCATGGAACTCC
TCGCTGAACCAACTCGTGTTGAAAAAATTGACATCAACTACGCAAAGGTG
GCGAAGAAAGTGGACGTACGGAAACTGAAGGCCGGGATTTGGACAAAGCT
GTGTGGAGACCAGAACGAGGAAGATTCAGGCCGTGGCGAAGGTGAAGAAG
GTTACGGTCACAAGTCTGGGAGTGCTTCAAACTCCTTACCAGACGTGAGA
ACCGGTGCAGCGCAGCGACTTCAAACAATAGTTTCAAACATTCCGTCAAT
CGTTCCGCCCACTTCGCTACCAGATGTGTCTCTGCCCTACGTGTTTATAT
GTTTGCTCCATTTGGCTAACGAAAAGCAGCTAAGAATAACGCAAGCCGAG
GACAACAAGTTGACAGACCTCATCGTGAAGGCTGAAGAGCAGACTGATGG
GCCCACCGTTTCTTGA