Gcaud2541.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2541.t1
Unique Name	Gcaud2541.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	300

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_146_length_43567_cov_5.009154	contig	NODE_146_length_43567_cov_5.009154:19268..20167 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_10449T0
Max annot lvl	2759\|Eukaryota
Evalue	3.17e-18
EggNOG OGs	2E99P@1\|root,2SFNP@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2541	Gcaud2541	Gracilaria caudata M_176_S67 male	gene	NODE_146_length_43567_cov_5.009154 19268..20167 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2541.t1.start1	Gcaud2541.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_146_length_43567_cov_5.009154 19268..19270 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2541.t1.CDS1	Gcaud2541.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_146_length_43567_cov_5.009154 19268..20167 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2541.t1.exon1	Gcaud2541.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_146_length_43567_cov_5.009154 19268..20167 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2541.t1.stop1	Gcaud2541.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_146_length_43567_cov_5.009154 20165..20167 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2541.t1	Gcaud2541.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_146_length_43567_cov_5.009154 19268..20167 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_146_length_43567_cov_5.009154:19268..20167+
coding sequence from alignment at NODE_146_length_43567_cov_5.009154:19268..20167+

mRNA sequence

>Gcaud2541.t1 ID=Gcaud2541.t1|Name=Gcaud2541.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=300bp
MFRTHLSASAAQHIRIDVLLLVACCTLLLAATTFKSDVILGQSSSSYVTN
TPNVTASIQTELIVPDPLENLSKEARSLVEKQVQVDYKSIWMSDLEINLV
LRYMNNVDAYIEWGSGGSTFNFPQFAKRAYSIEHSKNWCSRMRADISSHP
ELKHLQFHCVPIQRGTNGWGLMSAFEEGTYKTFKPYIDHIDNLGEQKFDV
VLIDGRARVDAAIKALSYLGKHSVVIVHDAERIWTRRTYADMFTYYDIID
SVGGKGRQGLAVMRRKSKYSYLQGKHGTIQDILNKKYPTTKEKSSSDST*

spliced messenger RNA

>Gcaud2541.t1 ID=Gcaud2541.t1|Name=Gcaud2541.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=900bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:19268..20167+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCGAACACATCTCTCAGCATCTGCGGCGCAACATATACGCATCGA
TGTCTTGCTACTTGTGGCATGCTGTACATTACTTCTCGCTGCAACTACTT
TCAAGTCCGATGTCATTTTGGGTCAATCATCCTCATCATACGTCACCAAT
ACACCCAACGTGACAGCGTCGATACAAACGGAACTTATCGTCCCTGATCC
TTTGGAAAACCTTTCAAAGGAGGCAAGATCACTAGTTGAGAAGCAGGTGC
AAGTAGACTACAAATCTATCTGGATGAGCGACCTGGAGATTAACCTTGTA
CTGAGATATATGAATAATGTCGACGCGTACATAGAATGGGGCAGTGGTGG
AAGCACATTCAACTTTCCACAGTTCGCAAAACGTGCGTATTCGATTGAAC
ACAGTAAAAACTGGTGCTCACGGATGAGAGCGGATATCAGTTCACACCCA
GAACTCAAACATCTTCAATTCCATTGCGTACCCATCCAACGTGGTACAAA
TGGGTGGGGATTGATGTCTGCTTTTGAAGAAGGGACCTACAAAACGTTCA
AACCGTACATTGATCACATTGACAACCTTGGAGAGCAAAAGTTTGACGTT
GTTTTAATCGATGGGCGCGCAAGAGTTGATGCTGCTATTAAGGCTTTATC
ATACCTTGGGAAGCACAGCGTCGTCATTGTGCATGATGCCGAGCGTATAT
GGACACGCAGAACATACGCGGATATGTTTACCTACTACGATATCATTGAC
TCTGTAGGGGGCAAGGGACGGCAAGGACTTGCAGTCATGCGAAGAAAATC
GAAGTACTCGTATCTGCAAGGGAAGCATGGCACTATACAGGACATACTGA
ATAAGAAGTATCCGACGACGAAAGAAAAGAGTTCAAGTGACTCGACATGA

protein sequence of Gcaud2541.t1

>Gcaud2541.t1 ID=Gcaud2541.t1|Name=Gcaud2541.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=300bp
MFRTHLSASAAQHIRIDVLLLVACCTLLLAATTFKSDVILGQSSSSYVTN
TPNVTASIQTELIVPDPLENLSKEARSLVEKQVQVDYKSIWMSDLEINLV
LRYMNNVDAYIEWGSGGSTFNFPQFAKRAYSIEHSKNWCSRMRADISSHP
ELKHLQFHCVPIQRGTNGWGLMSAFEEGTYKTFKPYIDHIDNLGEQKFDV
VLIDGRARVDAAIKALSYLGKHSVVIVHDAERIWTRRTYADMFTYYDIID
SVGGKGRQGLAVMRRKSKYSYLQGKHGTIQDILNKKYPTTKEKSSSDST*

mRNA from alignment at NODE_146_length_43567_cov_5.009154:19268..20167+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2541.t1 ID=Gcaud2541.t1|Name=Gcaud2541.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=900bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:19268..20167+ (Gracilaria caudata M_176_S67 male)
ATGTTTCGAACACATCTCTCAGCATCTGCGGCGCAACATATACGCATCGA
TGTCTTGCTACTTGTGGCATGCTGTACATTACTTCTCGCTGCAACTACTT
TCAAGTCCGATGTCATTTTGGGTCAATCATCCTCATCATACGTCACCAAT
ACACCCAACGTGACAGCGTCGATACAAACGGAACTTATCGTCCCTGATCC
TTTGGAAAACCTTTCAAAGGAGGCAAGATCACTAGTTGAGAAGCAGGTGC
AAGTAGACTACAAATCTATCTGGATGAGCGACCTGGAGATTAACCTTGTA
CTGAGATATATGAATAATGTCGACGCGTACATAGAATGGGGCAGTGGTGG
AAGCACATTCAACTTTCCACAGTTCGCAAAACGTGCGTATTCGATTGAAC
ACAGTAAAAACTGGTGCTCACGGATGAGAGCGGATATCAGTTCACACCCA
GAACTCAAACATCTTCAATTCCATTGCGTACCCATCCAACGTGGTACAAA
TGGGTGGGGATTGATGTCTGCTTTTGAAGAAGGGACCTACAAAACGTTCA
AACCGTACATTGATCACATTGACAACCTTGGAGAGCAAAAGTTTGACGTT
GTTTTAATCGATGGGCGCGCAAGAGTTGATGCTGCTATTAAGGCTTTATC
ATACCTTGGGAAGCACAGCGTCGTCATTGTGCATGATGCCGAGCGTATAT
GGACACGCAGAACATACGCGGATATGTTTACCTACTACGATATCATTGAC
TCTGTAGGGGGCAAGGGACGGCAAGGACTTGCAGTCATGCGAAGAAAATC
GAAGTACTCGTATCTGCAAGGGAAGCATGGCACTATACAGGACATACTGA
ATAAGAAGTATCCGACGACGAAAGAAAAGAGTTCAAGTGACTCGACATGA

Coding sequence (CDS) from alignment at NODE_146_length_43567_cov_5.009154:19268..20167+

>Gcaud2541.t1 ID=Gcaud2541.t1|Name=Gcaud2541.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=900bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:19268..20167+ (Gracilaria caudata M_176_S67 male)
ATGTTTCGAACACATCTCTCAGCATCTGCGGCGCAACATATACGCATCGA
TGTCTTGCTACTTGTGGCATGCTGTACATTACTTCTCGCTGCAACTACTT
TCAAGTCCGATGTCATTTTGGGTCAATCATCCTCATCATACGTCACCAAT
ACACCCAACGTGACAGCGTCGATACAAACGGAACTTATCGTCCCTGATCC
TTTGGAAAACCTTTCAAAGGAGGCAAGATCACTAGTTGAGAAGCAGGTGC
AAGTAGACTACAAATCTATCTGGATGAGCGACCTGGAGATTAACCTTGTA
CTGAGATATATGAATAATGTCGACGCGTACATAGAATGGGGCAGTGGTGG
AAGCACATTCAACTTTCCACAGTTCGCAAAACGTGCGTATTCGATTGAAC
ACAGTAAAAACTGGTGCTCACGGATGAGAGCGGATATCAGTTCACACCCA
GAACTCAAACATCTTCAATTCCATTGCGTACCCATCCAACGTGGTACAAA
TGGGTGGGGATTGATGTCTGCTTTTGAAGAAGGGACCTACAAAACGTTCA
AACCGTACATTGATCACATTGACAACCTTGGAGAGCAAAAGTTTGACGTT
GTTTTAATCGATGGGCGCGCAAGAGTTGATGCTGCTATTAAGGCTTTATC
ATACCTTGGGAAGCACAGCGTCGTCATTGTGCATGATGCCGAGCGTATAT
GGACACGCAGAACATACGCGGATATGTTTACCTACTACGATATCATTGAC
TCTGTAGGGGGCAAGGGACGGCAAGGACTTGCAGTCATGCGAAGAAAATC
GAAGTACTCGTATCTGCAAGGGAAGCATGGCACTATACAGGACATACTGA
ATAAGAAGTATCCGACGACGAAAGAAAAGAGTTCAAGTGACTCGACATGA