Gcaud2540.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2540.t1
Unique NameGcaud2540.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length317
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_146_length_43567_cov_5.009154contigNODE_146_length_43567_cov_5.009154:15910..17139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5022.CBX93204
Preferred nameDIC1
PFAMsMito_carr
Max annot lvl4751|Fungi
KEGG koko:K13577
KEGG TC2.A.29.2.2,2.A.29.2.3,2.A.29.2.7
KEGG Pathwayko04964,map04964
GOsGO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0006835,GO:0006839,GO:0006855,GO:0008150,GO:0008272,GO:0008509,GO:0008514,GO:0015075,GO:0015103,GO:0015116,GO:0015117,GO:0015131,GO:0015140,GO:0015141,GO:0015238,GO:0015291,GO:0015297,GO:0015318,GO:0015556,GO:0015698,GO:0015709,GO:0015711,GO:0015729,GO:0015740,GO:0015743,GO:0015744,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0035435,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071422,GO:0071423,GO:0071702,GO:0072348,GO:0098656,GO:0098660,GO:0098661,GO:1901682,GO:1902356,GO:1902358,GO:1903825,GO:1905039
Evalue1.51e-61
EggNOG OGsKOG0759@1|root,KOG0759@2759|Eukaryota,38GSC@33154|Opisthokonta,3NUAB@4751|Fungi,3QM68@4890|Ascomycota,200RE@147541|Dothideomycetes,4KDG0@92860|Pleosporales
DescriptionBelongs to the mitochondrial carrier (TC 2.A.29) family
COG categoryC
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2540Gcaud2540Gracilaria caudata M_176_S67 malegeneNODE_146_length_43567_cov_5.009154 15910..17139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2540.t1Gcaud2540.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_146_length_43567_cov_5.009154 15910..17139 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2540.t1.stop1Gcaud2540.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_146_length_43567_cov_5.009154 15910..15912 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2540.t1.CDS1Gcaud2540.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_146_length_43567_cov_5.009154 15910..16216 -
Gcaud2540.t1.CDS2Gcaud2540.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_146_length_43567_cov_5.009154 16362..16560 -
Gcaud2540.t1.CDS3Gcaud2540.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_146_length_43567_cov_5.009154 16632..16931 -
Gcaud2540.t1.CDS4Gcaud2540.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_146_length_43567_cov_5.009154 16995..17139 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2540.t1.exon1Gcaud2540.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_146_length_43567_cov_5.009154 15910..16216 -
Gcaud2540.t1.exon2Gcaud2540.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_146_length_43567_cov_5.009154 16362..16560 -
Gcaud2540.t1.exon3Gcaud2540.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_146_length_43567_cov_5.009154 16632..16931 -
Gcaud2540.t1.exon4Gcaud2540.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_146_length_43567_cov_5.009154 16995..17139 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2540.t1.intron1Gcaud2540.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_146_length_43567_cov_5.009154 16217..16361 -
Gcaud2540.t1.intron2Gcaud2540.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_146_length_43567_cov_5.009154 16561..16631 -
Gcaud2540.t1.intron3Gcaud2540.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_146_length_43567_cov_5.009154 16932..16994 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2540.t1.start1Gcaud2540.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_146_length_43567_cov_5.009154 17137..17139 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2540.t1 ID=Gcaud2540.t1|Name=Gcaud2540.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=317bp
MLSKMSESKKSAKDDFPVAKYQRSVPPSEHKKHPLYQQLALGGFSCAIAT
TFTHPIDTVKLRIQLQGSLSGTEHRYNGLVSGLYRVAQDEGLFALYNGLS
PAILRAATYSASRLGLYEPLRTLFTENMGYDQPTFGTKVTAAVSSGAIGA
FVGNPCELIKVRMQQADIYQYKHVGDGIVRIIREEGVTALWNGTMPAALR
AALLTSSQLATYDHCKTLLKRYTGLEEGLTAHFGAAMTAGLVTTSVSTPA
DVVKSVVMHSKPRMHPIECVRLILHKEGFRGFLRGWTANYARLGPHTLIT
VLTYENLRTAFGWNNL*
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spliced messenger RNA

>Gcaud2540.t1 ID=Gcaud2540.t1|Name=Gcaud2540.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=951bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:15910..17139- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTATCCAAGATGTCCGAGAGCAAGAAAAGTGCGAAAGATGATTTTCC
AGTCGCAAAGTACCAGCGATCCGTTCCTCCCTCAGAGCACAAGAAGCATC
CGCTGTATCAGCAATTGGCGTTAGGTGGATTTTCTTGCGCAATTGCCACG
ACTTTCACGCATCCGATCGATACCGTAAAGCTCCGCATTCAGCTTCAAGG
ATCGCTCTCTGGCACCGAGCACCGATACAATGGATTGGTGTCTGGATTAT
ATCGAGTTGCTCAGGATGAGGGTTTGTTTGCATTGTACAATGGGCTTTCA
CCAGCCATTCTTCGAGCGGCCACGTATAGCGCCTCACGGTTGGGTCTGTA
CGAACCGCTCAGGACGCTTTTCACTGAGAACATGGGTTACGACCAACCGA
CTTTCGGAACTAAGGTTACAGCTGCGGTATCATCAGGAGCAATCGGGGCT
TTTGTTGGTAATCCTTGTGAACTAATCAAAGTTCGAATGCAGCAAGCCGA
TATTTATCAGTACAAACACGTTGGAGACGGCATTGTTCGCATCATCAGAG
AAGAAGGCGTCACAGCCTTGTGGAACGGAACAATGCCTGCGGCTTTGCGA
GCAGCGTTGCTCACTTCGTCTCAACTTGCGACCTATGATCATTGCAAAAC
GCTTCTCAAGCGATATACGGGTCTTGAGGAGGGACTTACAGCTCACTTTG
GGGCTGCGATGACTGCAGGATTAGTCACCACTTCGGTATCAACACCGGCT
GACGTTGTGAAATCAGTTGTGATGCACTCCAAACCACGCATGCATCCCAT
CGAATGTGTTCGCTTGATATTGCACAAGGAGGGATTCCGAGGCTTTTTGC
GTGGCTGGACGGCCAATTACGCTCGACTTGGGCCGCACACACTAATCACA
GTTTTGACATACGAGAATTTAAGAACAGCGTTCGGCTGGAATAACTTGTA
A
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protein sequence of Gcaud2540.t1

>Gcaud2540.t1 ID=Gcaud2540.t1|Name=Gcaud2540.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=317bp
MLSKMSESKKSAKDDFPVAKYQRSVPPSEHKKHPLYQQLALGGFSCAIAT
TFTHPIDTVKLRIQLQGSLSGTEHRYNGLVSGLYRVAQDEGLFALYNGLS
PAILRAATYSASRLGLYEPLRTLFTENMGYDQPTFGTKVTAAVSSGAIGA
FVGNPCELIKVRMQQADIYQYKHVGDGIVRIIREEGVTALWNGTMPAALR
AALLTSSQLATYDHCKTLLKRYTGLEEGLTAHFGAAMTAGLVTTSVSTPA
DVVKSVVMHSKPRMHPIECVRLILHKEGFRGFLRGWTANYARLGPHTLIT
VLTYENLRTAFGWNNL*
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mRNA from alignment at NODE_146_length_43567_cov_5.009154:15910..17139-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2540.t1 ID=Gcaud2540.t1|Name=Gcaud2540.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:15910..17139- (Gracilaria caudata M_176_S67 male)
ATGCTATCCAAGATGTCCGAGAGCAAGAAAAGTGCGAAAGATGATTTTCC
AGTCGCAAAGTACCAGCGATCCGTTCCTCCCTCAGAGCACAAGAAGCATC
CGCTGTATCAGCAATTGGCGTTAGGTGGATTTTCTTGCGCAATTGGTACG
TGAAACATGGTTTCGTGTGCTCTATACATAACAGCTGCTAACAACGTTCC
GTCACCAGCCACGACTTTCACGCATCCGATCGATACCGTAAAGCTCCGCA
TTCAGCTTCAAGGATCGCTCTCTGGCACCGAGCACCGATACAATGGATTG
GTGTCTGGATTATATCGAGTTGCTCAGGATGAGGGTTTGTTTGCATTGTA
CAATGGGCTTTCACCAGCCATTCTTCGAGCGGCCACGTATAGCGCCTCAC
GGTTGGGTCTGTACGAACCGCTCAGGACGCTTTTCACTGAGAACATGGGT
TACGACCAACCGACTTTCGGAACTAAGGTTACAGCTGCGGTATCATCAGG
AGCAATCGGTACGTGATGGAGCTAAGTGCAAAGTTTTCAACGAGAGCCAT
GCGCTAACTTCTAGTTTTCGTTGTTATAGGGGCTTTTGTTGGTAATCCTT
GTGAACTAATCAAAGTTCGAATGCAGCAAGCCGATATTTATCAGTACAAA
CACGTTGGAGACGGCATTGTTCGCATCATCAGAGAAGAAGGCGTCACAGC
CTTGTGGAACGGAACAATGCCTGCGGCTTTGCGAGCAGCGTTGCTCACTT
CGTCTCAACTTGCGACCTATGATCATTGGTAAGGATAGACATCTGGCCTC
CTTTTATGCCAAACTTGAGGTCCACGCTGATATACTCATCAATGAAACTT
CGACTAACTCATGTGGGCTTCCATTTGCGGGGGTTTCAAACTCTACCTGT
ACGTTCGTATCAATTCTTCAAAGCAAAACGCTTCTCAAGCGATATACGGG
TCTTGAGGAGGGACTTACAGCTCACTTTGGGGCTGCGATGACTGCAGGAT
TAGTCACCACTTCGGTATCAACACCGGCTGACGTTGTGAAATCAGTTGTG
ATGCACTCCAAACCACGCATGCATCCCATCGAATGTGTTCGCTTGATATT
GCACAAGGAGGGATTCCGAGGCTTTTTGCGTGGCTGGACGGCCAATTACG
CTCGACTTGGGCCGCACACACTAATCACAGTTTTGACATACGAGAATTTA
AGAACAGCGTTCGGCTGGAATAACTTGTAA
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Coding sequence (CDS) from alignment at NODE_146_length_43567_cov_5.009154:15910..17139-

>Gcaud2540.t1 ID=Gcaud2540.t1|Name=Gcaud2540.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=951bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:15910..17139- (Gracilaria caudata M_176_S67 male)
ATGCTATCCAAGATGTCCGAGAGCAAGAAAAGTGCGAAAGATGATTTTCC
AGTCGCAAAGTACCAGCGATCCGTTCCTCCCTCAGAGCACAAGAAGCATC
CGCTGTATCAGCAATTGGCGTTAGGTGGATTTTCTTGCGCAATTGCCACG
ACTTTCACGCATCCGATCGATACCGTAAAGCTCCGCATTCAGCTTCAAGG
ATCGCTCTCTGGCACCGAGCACCGATACAATGGATTGGTGTCTGGATTAT
ATCGAGTTGCTCAGGATGAGGGTTTGTTTGCATTGTACAATGGGCTTTCA
CCAGCCATTCTTCGAGCGGCCACGTATAGCGCCTCACGGTTGGGTCTGTA
CGAACCGCTCAGGACGCTTTTCACTGAGAACATGGGTTACGACCAACCGA
CTTTCGGAACTAAGGTTACAGCTGCGGTATCATCAGGAGCAATCGGGGCT
TTTGTTGGTAATCCTTGTGAACTAATCAAAGTTCGAATGCAGCAAGCCGA
TATTTATCAGTACAAACACGTTGGAGACGGCATTGTTCGCATCATCAGAG
AAGAAGGCGTCACAGCCTTGTGGAACGGAACAATGCCTGCGGCTTTGCGA
GCAGCGTTGCTCACTTCGTCTCAACTTGCGACCTATGATCATTGCAAAAC
GCTTCTCAAGCGATATACGGGTCTTGAGGAGGGACTTACAGCTCACTTTG
GGGCTGCGATGACTGCAGGATTAGTCACCACTTCGGTATCAACACCGGCT
GACGTTGTGAAATCAGTTGTGATGCACTCCAAACCACGCATGCATCCCAT
CGAATGTGTTCGCTTGATATTGCACAAGGAGGGATTCCGAGGCTTTTTGC
GTGGCTGGACGGCCAATTACGCTCGACTTGGGCCGCACACACTAATCACA
GTTTTGACATACGAGAATTTAAGAACAGCGTTCGGCTGGAATAACTTGTA
A
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