Gcaud254.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud254.t1
Unique NameGcaud254.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length466
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_426_length_25926_cov_5.837081contigNODE_426_length_25926_cov_5.837081:5491..6888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1298867.AUES01000008_gene5279
Preferred nameMA20_15970
PFAMsM20_dimer,Peptidase_M20
Max annot lvl28211|Alphaproteobacteria
Evalue2.17e-52
EggNOG OGsCOG1473@1|root,COG1473@2|Bacteria,1MUIV@1224|Proteobacteria,2TR5B@28211|Alphaproteobacteria,3JRHP@41294|Bradyrhizobiaceae
Descriptionamidohydrolase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud254Gcaud254Gracilaria caudata M_176_S67 malegeneNODE_426_length_25926_cov_5.837081 5491..6888 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud254.t1.stop1Gcaud254.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_426_length_25926_cov_5.837081 5491..5493 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud254.t1.CDS1Gcaud254.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_426_length_25926_cov_5.837081 5491..6888 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud254.t1.exon1Gcaud254.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_426_length_25926_cov_5.837081 5491..6888 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud254.t1.start1Gcaud254.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_426_length_25926_cov_5.837081 6886..6888 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud254.t1Gcaud254.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_426_length_25926_cov_5.837081 5491..6888 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud254.t1 ID=Gcaud254.t1|Name=Gcaud254.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=466bp
MVTASASTSTHKHNDIKEFFDLHHDTHKAWLEELHDNPEPSFGEFQTAAI
VRRVLAENCPSFAVSDETLFEEAPTAILAVYTPSSLAPNEALKPILLRGD
MDALPMTGQTDADAALDTCATEECHMPGTAVAHKHVMKSSEQPGTESGNG
YYHACGHDGHTAVMLIAAHWIENNQQLVRRKVVIFFQPSEESRRKSDNRS
GAQVVVEDGLFDIHPDIHAVYAVHGGPGMPVGNFLISTSAIMAGSGRFSI
MIHGTGGHAGNPGRAQTEPLLAASAIITCGQTIISRRFEPQKSGVLAFCV
VDGLGSTAGNVCPSAVEVRGSIRAFSDDDWNYISAELERISTHIALAYKC
TAVYVGNKGYPVTENSPNGGEITYNAAAAVLKDEEVLNTYRVGYGVGEIP
PATGSEDFSYLLQRRPGAFSFLSIGEDFHSLHTPEVKFPAEALKYGGRYF
AELVLGPDCTDPIPT*
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spliced messenger RNA

>Gcaud254.t1 ID=Gcaud254.t1|Name=Gcaud254.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at NODE_426_length_25926_cov_5.837081:5491..6888- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACTGCATCCGCCAGCACTTCTACGCATAAGCATAACGACATCAA
GGAGTTCTTCGATTTGCACCACGACACCCACAAAGCCTGGCTAGAAGAAT
TGCACGACAACCCAGAGCCCTCTTTCGGTGAGTTCCAAACGGCTGCGATC
GTGCGTCGCGTCCTCGCAGAAAACTGCCCTTCCTTTGCAGTTTCTGATGA
AACGCTCTTCGAGGAAGCACCCACTGCCATACTTGCCGTGTACACCCCAA
GCTCCCTCGCACCAAATGAAGCTCTAAAGCCGATCCTTCTTCGTGGTGAC
ATGGATGCACTTCCCATGACAGGCCAAACGGACGCAGATGCAGCCTTGGA
TACATGTGCCACGGAAGAATGTCATATGCCCGGTACTGCCGTCGCTCACA
AGCACGTCATGAAATCCTCCGAGCAACCTGGCACGGAGAGTGGGAACGGA
TATTATCATGCATGCGGTCATGATGGTCACACCGCCGTGATGCTTATCGC
CGCCCACTGGATCGAGAATAATCAGCAACTGGTTCGCCGCAAGGTAGTTA
TTTTCTTCCAACCGTCCGAGGAGAGTCGTCGCAAAAGCGACAACCGCTCC
GGTGCGCAAGTTGTTGTTGAGGACGGCTTGTTTGATATTCATCCGGATAT
TCATGCTGTGTACGCCGTTCATGGTGGCCCGGGGATGCCAGTTGGAAACT
TTCTGATTAGTACATCTGCCATTATGGCTGGCTCTGGTCGTTTCTCGATT
ATGATCCATGGAACGGGAGGTCACGCCGGCAATCCGGGAAGGGCACAGAC
CGAACCTCTTCTCGCGGCGTCCGCCATTATCACATGCGGACAAACCATCA
TTTCACGAAGATTCGAGCCGCAAAAGTCTGGAGTACTGGCTTTCTGCGTC
GTCGATGGTCTGGGATCTACTGCAGGAAACGTGTGTCCCTCAGCAGTGGA
GGTTCGTGGCTCCATTCGCGCTTTCAGTGACGATGACTGGAATTACATCT
CGGCAGAACTCGAACGCATATCGACGCATATTGCTCTAGCGTACAAATGT
ACAGCAGTTTACGTCGGTAATAAAGGTTATCCCGTCACGGAGAACAGTCC
CAATGGCGGGGAGATCACATACAACGCAGCTGCTGCTGTGCTTAAGGACG
AAGAAGTGCTGAATACGTATAGGGTGGGTTACGGAGTCGGTGAAATTCCT
CCTGCTACTGGCTCCGAAGACTTTTCCTACCTACTTCAGAGGCGTCCTGG
GGCATTTTCGTTCCTTTCTATAGGCGAGGATTTCCATTCACTGCATACAC
CAGAAGTCAAGTTCCCTGCCGAGGCGCTGAAATATGGAGGGAGATATTTT
GCAGAACTTGTTCTCGGCCCCGACTGCACGGATCCAATTCCAACATGA
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protein sequence of Gcaud254.t1

>Gcaud254.t1 ID=Gcaud254.t1|Name=Gcaud254.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=466bp
MVTASASTSTHKHNDIKEFFDLHHDTHKAWLEELHDNPEPSFGEFQTAAI
VRRVLAENCPSFAVSDETLFEEAPTAILAVYTPSSLAPNEALKPILLRGD
MDALPMTGQTDADAALDTCATEECHMPGTAVAHKHVMKSSEQPGTESGNG
YYHACGHDGHTAVMLIAAHWIENNQQLVRRKVVIFFQPSEESRRKSDNRS
GAQVVVEDGLFDIHPDIHAVYAVHGGPGMPVGNFLISTSAIMAGSGRFSI
MIHGTGGHAGNPGRAQTEPLLAASAIITCGQTIISRRFEPQKSGVLAFCV
VDGLGSTAGNVCPSAVEVRGSIRAFSDDDWNYISAELERISTHIALAYKC
TAVYVGNKGYPVTENSPNGGEITYNAAAAVLKDEEVLNTYRVGYGVGEIP
PATGSEDFSYLLQRRPGAFSFLSIGEDFHSLHTPEVKFPAEALKYGGRYF
AELVLGPDCTDPIPT*
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mRNA from alignment at NODE_426_length_25926_cov_5.837081:5491..6888-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud254.t1 ID=Gcaud254.t1|Name=Gcaud254.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at NODE_426_length_25926_cov_5.837081:5491..6888- (Gracilaria caudata M_176_S67 male)
ATGGTTACTGCATCCGCCAGCACTTCTACGCATAAGCATAACGACATCAA
GGAGTTCTTCGATTTGCACCACGACACCCACAAAGCCTGGCTAGAAGAAT
TGCACGACAACCCAGAGCCCTCTTTCGGTGAGTTCCAAACGGCTGCGATC
GTGCGTCGCGTCCTCGCAGAAAACTGCCCTTCCTTTGCAGTTTCTGATGA
AACGCTCTTCGAGGAAGCACCCACTGCCATACTTGCCGTGTACACCCCAA
GCTCCCTCGCACCAAATGAAGCTCTAAAGCCGATCCTTCTTCGTGGTGAC
ATGGATGCACTTCCCATGACAGGCCAAACGGACGCAGATGCAGCCTTGGA
TACATGTGCCACGGAAGAATGTCATATGCCCGGTACTGCCGTCGCTCACA
AGCACGTCATGAAATCCTCCGAGCAACCTGGCACGGAGAGTGGGAACGGA
TATTATCATGCATGCGGTCATGATGGTCACACCGCCGTGATGCTTATCGC
CGCCCACTGGATCGAGAATAATCAGCAACTGGTTCGCCGCAAGGTAGTTA
TTTTCTTCCAACCGTCCGAGGAGAGTCGTCGCAAAAGCGACAACCGCTCC
GGTGCGCAAGTTGTTGTTGAGGACGGCTTGTTTGATATTCATCCGGATAT
TCATGCTGTGTACGCCGTTCATGGTGGCCCGGGGATGCCAGTTGGAAACT
TTCTGATTAGTACATCTGCCATTATGGCTGGCTCTGGTCGTTTCTCGATT
ATGATCCATGGAACGGGAGGTCACGCCGGCAATCCGGGAAGGGCACAGAC
CGAACCTCTTCTCGCGGCGTCCGCCATTATCACATGCGGACAAACCATCA
TTTCACGAAGATTCGAGCCGCAAAAGTCTGGAGTACTGGCTTTCTGCGTC
GTCGATGGTCTGGGATCTACTGCAGGAAACGTGTGTCCCTCAGCAGTGGA
GGTTCGTGGCTCCATTCGCGCTTTCAGTGACGATGACTGGAATTACATCT
CGGCAGAACTCGAACGCATATCGACGCATATTGCTCTAGCGTACAAATGT
ACAGCAGTTTACGTCGGTAATAAAGGTTATCCCGTCACGGAGAACAGTCC
CAATGGCGGGGAGATCACATACAACGCAGCTGCTGCTGTGCTTAAGGACG
AAGAAGTGCTGAATACGTATAGGGTGGGTTACGGAGTCGGTGAAATTCCT
CCTGCTACTGGCTCCGAAGACTTTTCCTACCTACTTCAGAGGCGTCCTGG
GGCATTTTCGTTCCTTTCTATAGGCGAGGATTTCCATTCACTGCATACAC
CAGAAGTCAAGTTCCCTGCCGAGGCGCTGAAATATGGAGGGAGATATTTT
GCAGAACTTGTTCTCGGCCCCGACTGCACGGATCCAATTCCAACATGA
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Coding sequence (CDS) from alignment at NODE_426_length_25926_cov_5.837081:5491..6888-

>Gcaud254.t1 ID=Gcaud254.t1|Name=Gcaud254.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1398bp|location=Sequence derived from alignment at NODE_426_length_25926_cov_5.837081:5491..6888- (Gracilaria caudata M_176_S67 male)
ATGGTTACTGCATCCGCCAGCACTTCTACGCATAAGCATAACGACATCAA
GGAGTTCTTCGATTTGCACCACGACACCCACAAAGCCTGGCTAGAAGAAT
TGCACGACAACCCAGAGCCCTCTTTCGGTGAGTTCCAAACGGCTGCGATC
GTGCGTCGCGTCCTCGCAGAAAACTGCCCTTCCTTTGCAGTTTCTGATGA
AACGCTCTTCGAGGAAGCACCCACTGCCATACTTGCCGTGTACACCCCAA
GCTCCCTCGCACCAAATGAAGCTCTAAAGCCGATCCTTCTTCGTGGTGAC
ATGGATGCACTTCCCATGACAGGCCAAACGGACGCAGATGCAGCCTTGGA
TACATGTGCCACGGAAGAATGTCATATGCCCGGTACTGCCGTCGCTCACA
AGCACGTCATGAAATCCTCCGAGCAACCTGGCACGGAGAGTGGGAACGGA
TATTATCATGCATGCGGTCATGATGGTCACACCGCCGTGATGCTTATCGC
CGCCCACTGGATCGAGAATAATCAGCAACTGGTTCGCCGCAAGGTAGTTA
TTTTCTTCCAACCGTCCGAGGAGAGTCGTCGCAAAAGCGACAACCGCTCC
GGTGCGCAAGTTGTTGTTGAGGACGGCTTGTTTGATATTCATCCGGATAT
TCATGCTGTGTACGCCGTTCATGGTGGCCCGGGGATGCCAGTTGGAAACT
TTCTGATTAGTACATCTGCCATTATGGCTGGCTCTGGTCGTTTCTCGATT
ATGATCCATGGAACGGGAGGTCACGCCGGCAATCCGGGAAGGGCACAGAC
CGAACCTCTTCTCGCGGCGTCCGCCATTATCACATGCGGACAAACCATCA
TTTCACGAAGATTCGAGCCGCAAAAGTCTGGAGTACTGGCTTTCTGCGTC
GTCGATGGTCTGGGATCTACTGCAGGAAACGTGTGTCCCTCAGCAGTGGA
GGTTCGTGGCTCCATTCGCGCTTTCAGTGACGATGACTGGAATTACATCT
CGGCAGAACTCGAACGCATATCGACGCATATTGCTCTAGCGTACAAATGT
ACAGCAGTTTACGTCGGTAATAAAGGTTATCCCGTCACGGAGAACAGTCC
CAATGGCGGGGAGATCACATACAACGCAGCTGCTGCTGTGCTTAAGGACG
AAGAAGTGCTGAATACGTATAGGGTGGGTTACGGAGTCGGTGAAATTCCT
CCTGCTACTGGCTCCGAAGACTTTTCCTACCTACTTCAGAGGCGTCCTGG
GGCATTTTCGTTCCTTTCTATAGGCGAGGATTTCCATTCACTGCATACAC
CAGAAGTCAAGTTCCCTGCCGAGGCGCTGAAATATGGAGGGAGATATTTT
GCAGAACTTGTTCTCGGCCCCGACTGCACGGATCCAATTCCAACATGA
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