Gcaud2539.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2539.t1
Unique Name	Gcaud2539.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	449

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_146_length_43567_cov_5.009154	contig	NODE_146_length_43567_cov_5.009154:12877..14308 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ29159
PFAMs	Amino_oxidase
Max annot lvl	35493\|Streptophyta
Evalue	2.64e-111
EggNOG OGs	COG1233@1\|root,2QSIC@2759\|Eukaryota,37N2T@33090\|Viridiplantae,3GBKK@35493\|Streptophyta
Description	Chloroplastic
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2539	Gcaud2539	Gracilaria caudata M_176_S67 male	gene	NODE_146_length_43567_cov_5.009154 12877..14308 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2539.t1	Gcaud2539.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_146_length_43567_cov_5.009154 12877..14308 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2539.t1.stop1	Gcaud2539.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_146_length_43567_cov_5.009154 12877..12879 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2539.t1.CDS1	Gcaud2539.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_146_length_43567_cov_5.009154 12877..13930 -
Gcaud2539.t1.CDS2	Gcaud2539.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_146_length_43567_cov_5.009154 14016..14308 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2539.t1.exon1	Gcaud2539.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_146_length_43567_cov_5.009154 12877..13930 -
Gcaud2539.t1.exon2	Gcaud2539.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_146_length_43567_cov_5.009154 14016..14308 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2539.t1.intron1	Gcaud2539.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_146_length_43567_cov_5.009154 13931..14015 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2539.t1.start1	Gcaud2539.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_146_length_43567_cov_5.009154 14306..14308 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_146_length_43567_cov_5.009154:12877..14308-
coding sequence from alignment at NODE_146_length_43567_cov_5.009154:12877..14308-

mRNA sequence

>Gcaud2539.t1 ID=Gcaud2539.t1|Name=Gcaud2539.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=449bp
MSGWTPLSPGVFRRKRLAAKAPKCVASAAPQKPTAVVVGAGVAGLSAARE
LAKAGLSITILEASDDVGGRVRTDVVEGFLLDRGFQVFIEAYPECRKVLR
YDELKLHRFLPGAIVRYKNAFHTISDPFRAPLLAISGLFTPIGSLADKAR
VALLRFKLLGTPLQNILSSASQPLDSFLGGEGFSQQFIDTFFRPFYQGIF
LAPLAEQSSIMFSFVFRMFAEDAASLPAGGIGAISRQMAESLPQDVELKL
NSRVTSVSGNSVRTENHEYTPNVVVVATEGPEAARLLTGVECAASRGSIC
LYFSSNKAAPISEPLLVLNGEKDGVVNNMFFPAKVCASYAPAGKTLISST
IVGDELGKSDSEVEQAVRLQLKGWFGDMVDEWQLLRMYRIVHSQPAQDDD
FVFEREVEVGEGVFVCGDHRNSPTLHGAMVSGRLAAQKALEHVRARSS*

spliced messenger RNA

>Gcaud2539.t1 ID=Gcaud2539.t1|Name=Gcaud2539.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:12877..14308- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGGATGGACACCTCTTTCGCCAGGCGTCTTTCGAAGAAAGAGATT
AGCTGCTAAAGCGCCGAAATGCGTGGCCTCAGCAGCGCCCCAAAAGCCCA
CCGCAGTGGTGGTCGGGGCCGGCGTTGCTGGACTGTCCGCAGCTCGTGAG
CTCGCGAAAGCTGGACTCAGCATAACAATCCTCGAAGCATCAGATGACGT
CGGAGGTCGCGTGCGCACTGATGTTGTGGAGGGCTTTCTACTCGACCGCG
GGTTCCAGGTGTTCATTGAAGCGTATCCAGAATGCAGAAAAGTACTTCGA
TATGATGAGCTCAAACTACATCGTTTTCTACCAGGTGCAATTGTAAGGTA
TAAGAACGCGTTTCATACGATTAGCGATCCGTTTCGCGCACCGCTGCTCG
CTATCTCTGGTCTATTTACGCCGATAGGCAGTCTGGCGGACAAAGCACGA
GTTGCGTTGCTGCGCTTCAAACTGCTGGGAACGCCGTTGCAAAACATTCT
GAGCAGCGCATCACAGCCACTCGATTCCTTTCTTGGTGGGGAGGGTTTTT
CGCAGCAGTTCATCGATACCTTTTTCCGGCCATTCTACCAAGGTATCTTC
TTGGCGCCTCTTGCGGAGCAATCTTCCATTATGTTTTCGTTTGTGTTCAG
GATGTTTGCCGAGGATGCAGCGTCGTTGCCAGCGGGTGGTATTGGTGCAA
TCTCACGACAAATGGCAGAAAGCCTTCCACAGGATGTGGAATTGAAGCTG
AACAGCAGAGTTACGAGCGTGAGTGGTAACTCGGTGCGCACTGAAAATCA
TGAGTACACGCCTAATGTGGTTGTGGTTGCGACAGAGGGTCCCGAGGCGG
CTCGTTTATTGACAGGAGTGGAATGTGCGGCGTCACGTGGAAGTATTTGT
TTATACTTTTCGTCAAACAAGGCAGCGCCGATTTCAGAACCACTCCTGGT
GCTGAATGGTGAGAAGGATGGGGTGGTGAACAACATGTTCTTTCCGGCAA
AGGTATGCGCAAGTTACGCTCCGGCTGGAAAGACTCTGATATCAAGCACT
ATAGTCGGGGACGAGTTGGGCAAAAGTGATAGCGAGGTGGAACAGGCGGT
GCGACTGCAGTTAAAGGGTTGGTTCGGAGATATGGTGGATGAGTGGCAGC
TGTTACGCATGTATCGCATCGTGCACTCGCAGCCAGCGCAGGATGACGAC
TTTGTATTCGAAAGGGAGGTGGAGGTGGGTGAGGGCGTGTTCGTGTGCGG
CGATCATAGGAACTCGCCGACGCTGCACGGGGCCATGGTCTCAGGACGGC
TGGCGGCGCAGAAGGCGCTGGAGCACGTACGGGCGCGGAGCAGTTAG

protein sequence of Gcaud2539.t1

>Gcaud2539.t1 ID=Gcaud2539.t1|Name=Gcaud2539.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=449bp
MSGWTPLSPGVFRRKRLAAKAPKCVASAAPQKPTAVVVGAGVAGLSAARE
LAKAGLSITILEASDDVGGRVRTDVVEGFLLDRGFQVFIEAYPECRKVLR
YDELKLHRFLPGAIVRYKNAFHTISDPFRAPLLAISGLFTPIGSLADKAR
VALLRFKLLGTPLQNILSSASQPLDSFLGGEGFSQQFIDTFFRPFYQGIF
LAPLAEQSSIMFSFVFRMFAEDAASLPAGGIGAISRQMAESLPQDVELKL
NSRVTSVSGNSVRTENHEYTPNVVVVATEGPEAARLLTGVECAASRGSIC
LYFSSNKAAPISEPLLVLNGEKDGVVNNMFFPAKVCASYAPAGKTLISST
IVGDELGKSDSEVEQAVRLQLKGWFGDMVDEWQLLRMYRIVHSQPAQDDD
FVFEREVEVGEGVFVCGDHRNSPTLHGAMVSGRLAAQKALEHVRARSS*

mRNA from alignment at NODE_146_length_43567_cov_5.009154:12877..14308-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2539.t1 ID=Gcaud2539.t1|Name=Gcaud2539.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1432bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:12877..14308- (Gracilaria caudata M_176_S67 male)
ATGAGTGGATGGACACCTCTTTCGCCAGGCGTCTTTCGAAGAAAGAGATT
AGCTGCTAAAGCGCCGAAATGCGTGGCCTCAGCAGCGCCCCAAAAGCCCA
CCGCAGTGGTGGTCGGGGCCGGCGTTGCTGGACTGTCCGCAGCTCGTGAG
CTCGCGAAAGCTGGACTCAGCATAACAATCCTCGAAGCATCAGATGACGT
CGGAGGTCGCGTGCGCACTGATGTTGTGGAGGGCTTTCTACTCGACCGCG
GGTTCCAGGTGTTCATTGAAGCGTATCCAGAATGCAGAAAAGTGTGAGTT
CTGTGCACTGTTGCGTTTTGCAGCGAAGTTTTGTATGCACTGACCATGAA
GATACTTGCTATGTTTGGTCGCGAACAGACTTCGATATGATGAGCTCAAA
CTACATCGTTTTCTACCAGGTGCAATTGTAAGGTATAAGAACGCGTTTCA
TACGATTAGCGATCCGTTTCGCGCACCGCTGCTCGCTATCTCTGGTCTAT
TTACGCCGATAGGCAGTCTGGCGGACAAAGCACGAGTTGCGTTGCTGCGC
TTCAAACTGCTGGGAACGCCGTTGCAAAACATTCTGAGCAGCGCATCACA
GCCACTCGATTCCTTTCTTGGTGGGGAGGGTTTTTCGCAGCAGTTCATCG
ATACCTTTTTCCGGCCATTCTACCAAGGTATCTTCTTGGCGCCTCTTGCG
GAGCAATCTTCCATTATGTTTTCGTTTGTGTTCAGGATGTTTGCCGAGGA
TGCAGCGTCGTTGCCAGCGGGTGGTATTGGTGCAATCTCACGACAAATGG
CAGAAAGCCTTCCACAGGATGTGGAATTGAAGCTGAACAGCAGAGTTACG
AGCGTGAGTGGTAACTCGGTGCGCACTGAAAATCATGAGTACACGCCTAA
TGTGGTTGTGGTTGCGACAGAGGGTCCCGAGGCGGCTCGTTTATTGACAG
GAGTGGAATGTGCGGCGTCACGTGGAAGTATTTGTTTATACTTTTCGTCA
AACAAGGCAGCGCCGATTTCAGAACCACTCCTGGTGCTGAATGGTGAGAA
GGATGGGGTGGTGAACAACATGTTCTTTCCGGCAAAGGTATGCGCAAGTT
ACGCTCCGGCTGGAAAGACTCTGATATCAAGCACTATAGTCGGGGACGAG
TTGGGCAAAAGTGATAGCGAGGTGGAACAGGCGGTGCGACTGCAGTTAAA
GGGTTGGTTCGGAGATATGGTGGATGAGTGGCAGCTGTTACGCATGTATC
GCATCGTGCACTCGCAGCCAGCGCAGGATGACGACTTTGTATTCGAAAGG
GAGGTGGAGGTGGGTGAGGGCGTGTTCGTGTGCGGCGATCATAGGAACTC
GCCGACGCTGCACGGGGCCATGGTCTCAGGACGGCTGGCGGCGCAGAAGG
CGCTGGAGCACGTACGGGCGCGGAGCAGTTAG

Coding sequence (CDS) from alignment at NODE_146_length_43567_cov_5.009154:12877..14308-

>Gcaud2539.t1 ID=Gcaud2539.t1|Name=Gcaud2539.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1347bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:12877..14308- (Gracilaria caudata M_176_S67 male)
ATGAGTGGATGGACACCTCTTTCGCCAGGCGTCTTTCGAAGAAAGAGATT
AGCTGCTAAAGCGCCGAAATGCGTGGCCTCAGCAGCGCCCCAAAAGCCCA
CCGCAGTGGTGGTCGGGGCCGGCGTTGCTGGACTGTCCGCAGCTCGTGAG
CTCGCGAAAGCTGGACTCAGCATAACAATCCTCGAAGCATCAGATGACGT
CGGAGGTCGCGTGCGCACTGATGTTGTGGAGGGCTTTCTACTCGACCGCG
GGTTCCAGGTGTTCATTGAAGCGTATCCAGAATGCAGAAAAGTACTTCGA
TATGATGAGCTCAAACTACATCGTTTTCTACCAGGTGCAATTGTAAGGTA
TAAGAACGCGTTTCATACGATTAGCGATCCGTTTCGCGCACCGCTGCTCG
CTATCTCTGGTCTATTTACGCCGATAGGCAGTCTGGCGGACAAAGCACGA
GTTGCGTTGCTGCGCTTCAAACTGCTGGGAACGCCGTTGCAAAACATTCT
GAGCAGCGCATCACAGCCACTCGATTCCTTTCTTGGTGGGGAGGGTTTTT
CGCAGCAGTTCATCGATACCTTTTTCCGGCCATTCTACCAAGGTATCTTC
TTGGCGCCTCTTGCGGAGCAATCTTCCATTATGTTTTCGTTTGTGTTCAG
GATGTTTGCCGAGGATGCAGCGTCGTTGCCAGCGGGTGGTATTGGTGCAA
TCTCACGACAAATGGCAGAAAGCCTTCCACAGGATGTGGAATTGAAGCTG
AACAGCAGAGTTACGAGCGTGAGTGGTAACTCGGTGCGCACTGAAAATCA
TGAGTACACGCCTAATGTGGTTGTGGTTGCGACAGAGGGTCCCGAGGCGG
CTCGTTTATTGACAGGAGTGGAATGTGCGGCGTCACGTGGAAGTATTTGT
TTATACTTTTCGTCAAACAAGGCAGCGCCGATTTCAGAACCACTCCTGGT
GCTGAATGGTGAGAAGGATGGGGTGGTGAACAACATGTTCTTTCCGGCAA
AGGTATGCGCAAGTTACGCTCCGGCTGGAAAGACTCTGATATCAAGCACT
ATAGTCGGGGACGAGTTGGGCAAAAGTGATAGCGAGGTGGAACAGGCGGT
GCGACTGCAGTTAAAGGGTTGGTTCGGAGATATGGTGGATGAGTGGCAGC
TGTTACGCATGTATCGCATCGTGCACTCGCAGCCAGCGCAGGATGACGAC
TTTGTATTCGAAAGGGAGGTGGAGGTGGGTGAGGGCGTGTTCGTGTGCGG
CGATCATAGGAACTCGCCGACGCTGCACGGGGCCATGGTCTCAGGACGGC
TGGCGGCGCAGAAGGCGCTGGAGCACGTACGGGCGCGGAGCAGTTAG