Gcaud2533.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2533.t1
Unique Name	Gcaud2533.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	290

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_6809_length_1074_cov_7.101729	contig	NODE_6809_length_1074_cov_7.101729:207..1074 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	583355.Caka_0059
PFAMs	Big_4,Glyco_hydro_16,RicinB_lectin_2
Max annot lvl	2\|Bacteria
KEGG ko	ko:K20846
Evalue	5.62e-33
EggNOG OGs	COG2273@1\|root,COG2273@2\|Bacteria
EC	3.2.1.83
Description	xyloglucan:xyloglucosyl transferase activity
COG category	G
CAZy	GH16
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2533	Gcaud2533	Gracilaria caudata M_176_S67 male	gene	NODE_6809_length_1074_cov_7.101729 207..1074 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2533.t1.start1	Gcaud2533.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_6809_length_1074_cov_7.101729 207..209 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2533.t1.CDS1	Gcaud2533.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_6809_length_1074_cov_7.101729 207..1074 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2533.t1.exon1	Gcaud2533.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_6809_length_1074_cov_7.101729 207..1074 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2533.t1	Gcaud2533.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_6809_length_1074_cov_7.101729 207..1074 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_6809_length_1074_cov_7.101729:207..1074+
coding sequence from alignment at NODE_6809_length_1074_cov_7.101729:207..1074+

mRNA sequence

>Gcaud2533.t1 ID=Gcaud2533.t1|Name=Gcaud2533.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=290bp
MTVYKDVPRLKYDPAHTHRDTPLPYYLQQELAPNTKWAMDWGMSDEFNTY
PLENWYNNNKWVRFNPLWRGRHPSFFSQENVYVRDDRLWLESRERPPSDL
DLQRMKNRHPLDGNSWKYATSFIRTAEQRKYGYYEIACKLMDSNVSCAFW
FINHRDTEIDVFEYSTSGKNYDIYDKSRVPFRQKFNMNTLVYSGPNGNNI
RSNPMKIDVGRDLSKEIVKVGFLWKPDVLVWYLNDREVRRIPNHDFHIPL
YLQLDSEVFPNWFGLPGEYGAKKLPNSWQVFYVRSYQMQX

spliced messenger RNA

>Gcaud2533.t1 ID=Gcaud2533.t1|Name=Gcaud2533.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=868bp|location=Sequence derived from alignment at NODE_6809_length_1074_cov_7.101729:207..1074+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTCTACAAAGATGTTCCCCGTCTCAAGTACGACCCCGCCCATAC
GCACCGCGACACCCCGCTTCCGTACTATCTCCAGCAGGAGCTCGCCCCCA
ACACCAAGTGGGCCATGGACTGGGGAATGTCCGATGAGTTCAACACTTAT
CCGCTCGAAAACTGGTACAACAACAACAAGTGGGTTCGATTCAATCCGCT
GTGGCGTGGAAGACACCCCAGTTTCTTCTCTCAGGAAAACGTGTATGTGC
GCGACGACCGTCTGTGGCTGGAGTCCAGGGAGAGACCGCCGTCCGACCTG
GACCTTCAGAGGATGAAGAATCGTCACCCTCTGGATGGCAACAGCTGGAA
GTACGCCACCAGTTTCATCCGTACAGCCGAGCAACGCAAGTACGGCTACT
ACGAAATTGCGTGCAAGCTGATGGACAGCAATGTGAGCTGTGCTTTCTGG
TTCATCAACCATCGTGACACGGAGATTGACGTATTCGAATACTCCACCTC
CGGAAAGAACTACGACATCTACGACAAATCACGTGTGCCGTTCAGGCAGA
AGTTCAACATGAACACTCTGGTGTACTCTGGACCGAACGGAAACAACATT
CGTTCCAACCCTATGAAGATCGACGTGGGGCGCGATCTGTCCAAGGAAAT
CGTGAAGGTTGGATTCCTATGGAAACCAGACGTGCTTGTTTGGTATTTGA
ATGATCGCGAAGTGCGCCGTATTCCGAACCACGACTTCCATATCCCTCTT
TACCTGCAACTTGATTCGGAGGTGTTCCCCAACTGGTTCGGATTACCTGG
AGAGTATGGCGCAAAGAAGCTGCCGAATTCGTGGCAAGTGTTCTACGTCC
GCAGCTATCAAATGCAAC

protein sequence of Gcaud2533.t1

>Gcaud2533.t1 ID=Gcaud2533.t1|Name=Gcaud2533.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=290bp
MTVYKDVPRLKYDPAHTHRDTPLPYYLQQELAPNTKWAMDWGMSDEFNTY
PLENWYNNNKWVRFNPLWRGRHPSFFSQENVYVRDDRLWLESRERPPSDL
DLQRMKNRHPLDGNSWKYATSFIRTAEQRKYGYYEIACKLMDSNVSCAFW
FINHRDTEIDVFEYSTSGKNYDIYDKSRVPFRQKFNMNTLVYSGPNGNNI
RSNPMKIDVGRDLSKEIVKVGFLWKPDVLVWYLNDREVRRIPNHDFHIPL
YLQLDSEVFPNWFGLPGEYGAKKLPNSWQVFYVRSYQMQX

mRNA from alignment at NODE_6809_length_1074_cov_7.101729:207..1074+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2533.t1 ID=Gcaud2533.t1|Name=Gcaud2533.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=868bp|location=Sequence derived from alignment at NODE_6809_length_1074_cov_7.101729:207..1074+ (Gracilaria caudata M_176_S67 male)
ATGACTGTCTACAAAGATGTTCCCCGTCTCAAGTACGACCCCGCCCATAC
GCACCGCGACACCCCGCTTCCGTACTATCTCCAGCAGGAGCTCGCCCCCA
ACACCAAGTGGGCCATGGACTGGGGAATGTCCGATGAGTTCAACACTTAT
CCGCTCGAAAACTGGTACAACAACAACAAGTGGGTTCGATTCAATCCGCT
GTGGCGTGGAAGACACCCCAGTTTCTTCTCTCAGGAAAACGTGTATGTGC
GCGACGACCGTCTGTGGCTGGAGTCCAGGGAGAGACCGCCGTCCGACCTG
GACCTTCAGAGGATGAAGAATCGTCACCCTCTGGATGGCAACAGCTGGAA
GTACGCCACCAGTTTCATCCGTACAGCCGAGCAACGCAAGTACGGCTACT
ACGAAATTGCGTGCAAGCTGATGGACAGCAATGTGAGCTGTGCTTTCTGG
TTCATCAACCATCGTGACACGGAGATTGACGTATTCGAATACTCCACCTC
CGGAAAGAACTACGACATCTACGACAAATCACGTGTGCCGTTCAGGCAGA
AGTTCAACATGAACACTCTGGTGTACTCTGGACCGAACGGAAACAACATT
CGTTCCAACCCTATGAAGATCGACGTGGGGCGCGATCTGTCCAAGGAAAT
CGTGAAGGTTGGATTCCTATGGAAACCAGACGTGCTTGTTTGGTATTTGA
ATGATCGCGAAGTGCGCCGTATTCCGAACCACGACTTCCATATCCCTCTT
TACCTGCAACTTGATTCGGAGGTGTTCCCCAACTGGTTCGGATTACCTGG
AGAGTATGGCGCAAAGAAGCTGCCGAATTCGTGGCAAGTGTTCTACGTCC
GCAGCTATCAAATGCAAC

Coding sequence (CDS) from alignment at NODE_6809_length_1074_cov_7.101729:207..1074+

>Gcaud2533.t1 ID=Gcaud2533.t1|Name=Gcaud2533.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=868bp|location=Sequence derived from alignment at NODE_6809_length_1074_cov_7.101729:207..1074+ (Gracilaria caudata M_176_S67 male)
ATGACTGTCTACAAAGATGTTCCCCGTCTCAAGTACGACCCCGCCCATAC
GCACCGCGACACCCCGCTTCCGTACTATCTCCAGCAGGAGCTCGCCCCCA
ACACCAAGTGGGCCATGGACTGGGGAATGTCCGATGAGTTCAACACTTAT
CCGCTCGAAAACTGGTACAACAACAACAAGTGGGTTCGATTCAATCCGCT
GTGGCGTGGAAGACACCCCAGTTTCTTCTCTCAGGAAAACGTGTATGTGC
GCGACGACCGTCTGTGGCTGGAGTCCAGGGAGAGACCGCCGTCCGACCTG
GACCTTCAGAGGATGAAGAATCGTCACCCTCTGGATGGCAACAGCTGGAA
GTACGCCACCAGTTTCATCCGTACAGCCGAGCAACGCAAGTACGGCTACT
ACGAAATTGCGTGCAAGCTGATGGACAGCAATGTGAGCTGTGCTTTCTGG
TTCATCAACCATCGTGACACGGAGATTGACGTATTCGAATACTCCACCTC
CGGAAAGAACTACGACATCTACGACAAATCACGTGTGCCGTTCAGGCAGA
AGTTCAACATGAACACTCTGGTGTACTCTGGACCGAACGGAAACAACATT
CGTTCCAACCCTATGAAGATCGACGTGGGGCGCGATCTGTCCAAGGAAAT
CGTGAAGGTTGGATTCCTATGGAAACCAGACGTGCTTGTTTGGTATTTGA
ATGATCGCGAAGTGCGCCGTATTCCGAACCACGACTTCCATATCCCTCTT
TACCTGCAACTTGATTCGGAGGTGTTCCCCAACTGGTTCGGATTACCTGG
AGAGTATGGCGCAAAGAAGCTGCCGAATTCGTGGCAAGTGTTCTACGTCC
GCAGCTATCAAATGCAAC