Gcaud2532.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2532.t1
Unique Name	Gcaud2532.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	247

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_290_length_32094_cov_4.541512	contig	NODE_290_length_32094_cov_4.541512:27875..28615 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2532	Gcaud2532	Gracilaria caudata M_176_S67 male	gene	NODE_290_length_32094_cov_4.541512 27875..28615 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2532.t1.start1	Gcaud2532.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_290_length_32094_cov_4.541512 27875..27877 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2532.t1.CDS1	Gcaud2532.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_290_length_32094_cov_4.541512 27875..28615 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2532.t1.exon1	Gcaud2532.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_290_length_32094_cov_4.541512 27875..28615 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2532.t1.stop1	Gcaud2532.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_290_length_32094_cov_4.541512 28613..28615 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2532.t1	Gcaud2532.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_290_length_32094_cov_4.541512 27875..28615 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_290_length_32094_cov_4.541512:27875..28615+
coding sequence from alignment at NODE_290_length_32094_cov_4.541512:27875..28615+

mRNA sequence

>Gcaud2532.t1 ID=Gcaud2532.t1|Name=Gcaud2532.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=247bp
MDLGQAEMQTDDVLFMKGSDILMTDPGTEFEDLCGLAHNEGYYPVNHEQW
LNRNSDGSSVQCPPSSPGNTDSNVFFVDDCGDVLMTFPWLAFDLVSRMAM
KKGYKSQPISKWLRRNERRSPRSPRSARGSPRSSHSPRSSGTGTSGTNGS
EERIAGVAGGVRKPSRRLLFTHLPLRFFRSNELEDFLRKYDVEPTEIRMM
GQGFCESLQRAVVSLQSSEDSEKVMKNFRSEYPYENIRVVEMDKRE*

spliced messenger RNA

>Gcaud2532.t1 ID=Gcaud2532.t1|Name=Gcaud2532.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=741bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:27875..28615+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCTTGGGCAGGCGGAAATGCAGACGGATGATGTTTTGTTCATGAA
AGGGTCGGACATTTTGATGACTGACCCAGGAACGGAATTTGAGGACCTGT
GTGGGTTGGCACACAATGAGGGGTATTACCCCGTCAACCATGAACAGTGG
CTCAACAGAAACTCGGATGGGAGCTCTGTTCAATGCCCGCCGTCGAGTCC
GGGAAATACGGACTCAAATGTTTTCTTTGTGGACGACTGTGGGGATGTGC
TGATGACATTTCCATGGTTGGCTTTCGACTTGGTTAGTCGCATGGCCATG
AAGAAGGGCTACAAATCGCAGCCTATTTCGAAGTGGTTGCGACGAAACGA
GCGAAGGTCGCCGCGATCACCCAGAAGTGCCCGAGGATCGCCCCGGAGTT
CCCATTCACCAAGGAGCTCTGGGACGGGAACAAGCGGGACCAATGGATCT
GAAGAACGAATAGCGGGCGTGGCAGGTGGTGTACGTAAACCATCTCGCAG
GTTACTATTCACCCATCTGCCGCTCCGCTTCTTCAGGTCCAACGAACTTG
AGGACTTCTTGCGGAAGTATGATGTGGAGCCCACAGAAATCAGAATGATG
GGTCAGGGGTTCTGCGAAAGTTTGCAGAGGGCAGTGGTGAGCTTACAAAG
CTCCGAGGATTCGGAGAAAGTAATGAAGAATTTTCGATCTGAATACCCTT
ACGAAAACATTAGGGTCGTGGAGATGGACAAGCGGGAGTGA

protein sequence of Gcaud2532.t1

>Gcaud2532.t1 ID=Gcaud2532.t1|Name=Gcaud2532.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=247bp
MDLGQAEMQTDDVLFMKGSDILMTDPGTEFEDLCGLAHNEGYYPVNHEQW
LNRNSDGSSVQCPPSSPGNTDSNVFFVDDCGDVLMTFPWLAFDLVSRMAM
KKGYKSQPISKWLRRNERRSPRSPRSARGSPRSSHSPRSSGTGTSGTNGS
EERIAGVAGGVRKPSRRLLFTHLPLRFFRSNELEDFLRKYDVEPTEIRMM
GQGFCESLQRAVVSLQSSEDSEKVMKNFRSEYPYENIRVVEMDKRE*

mRNA from alignment at NODE_290_length_32094_cov_4.541512:27875..28615+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2532.t1 ID=Gcaud2532.t1|Name=Gcaud2532.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=741bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:27875..28615+ (Gracilaria caudata M_176_S67 male)
ATGGATCTTGGGCAGGCGGAAATGCAGACGGATGATGTTTTGTTCATGAA
AGGGTCGGACATTTTGATGACTGACCCAGGAACGGAATTTGAGGACCTGT
GTGGGTTGGCACACAATGAGGGGTATTACCCCGTCAACCATGAACAGTGG
CTCAACAGAAACTCGGATGGGAGCTCTGTTCAATGCCCGCCGTCGAGTCC
GGGAAATACGGACTCAAATGTTTTCTTTGTGGACGACTGTGGGGATGTGC
TGATGACATTTCCATGGTTGGCTTTCGACTTGGTTAGTCGCATGGCCATG
AAGAAGGGCTACAAATCGCAGCCTATTTCGAAGTGGTTGCGACGAAACGA
GCGAAGGTCGCCGCGATCACCCAGAAGTGCCCGAGGATCGCCCCGGAGTT
CCCATTCACCAAGGAGCTCTGGGACGGGAACAAGCGGGACCAATGGATCT
GAAGAACGAATAGCGGGCGTGGCAGGTGGTGTACGTAAACCATCTCGCAG
GTTACTATTCACCCATCTGCCGCTCCGCTTCTTCAGGTCCAACGAACTTG
AGGACTTCTTGCGGAAGTATGATGTGGAGCCCACAGAAATCAGAATGATG
GGTCAGGGGTTCTGCGAAAGTTTGCAGAGGGCAGTGGTGAGCTTACAAAG
CTCCGAGGATTCGGAGAAAGTAATGAAGAATTTTCGATCTGAATACCCTT
ACGAAAACATTAGGGTCGTGGAGATGGACAAGCGGGAGTGA

Coding sequence (CDS) from alignment at NODE_290_length_32094_cov_4.541512:27875..28615+

>Gcaud2532.t1 ID=Gcaud2532.t1|Name=Gcaud2532.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=741bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:27875..28615+ (Gracilaria caudata M_176_S67 male)
ATGGATCTTGGGCAGGCGGAAATGCAGACGGATGATGTTTTGTTCATGAA
AGGGTCGGACATTTTGATGACTGACCCAGGAACGGAATTTGAGGACCTGT
GTGGGTTGGCACACAATGAGGGGTATTACCCCGTCAACCATGAACAGTGG
CTCAACAGAAACTCGGATGGGAGCTCTGTTCAATGCCCGCCGTCGAGTCC
GGGAAATACGGACTCAAATGTTTTCTTTGTGGACGACTGTGGGGATGTGC
TGATGACATTTCCATGGTTGGCTTTCGACTTGGTTAGTCGCATGGCCATG
AAGAAGGGCTACAAATCGCAGCCTATTTCGAAGTGGTTGCGACGAAACGA
GCGAAGGTCGCCGCGATCACCCAGAAGTGCCCGAGGATCGCCCCGGAGTT
CCCATTCACCAAGGAGCTCTGGGACGGGAACAAGCGGGACCAATGGATCT
GAAGAACGAATAGCGGGCGTGGCAGGTGGTGTACGTAAACCATCTCGCAG
GTTACTATTCACCCATCTGCCGCTCCGCTTCTTCAGGTCCAACGAACTTG
AGGACTTCTTGCGGAAGTATGATGTGGAGCCCACAGAAATCAGAATGATG
GGTCAGGGGTTCTGCGAAAGTTTGCAGAGGGCAGTGGTGAGCTTACAAAG
CTCCGAGGATTCGGAGAAAGTAATGAAGAATTTTCGATCTGAATACCCTT
ACGAAAACATTAGGGTCGTGGAGATGGACAAGCGGGAGTGA