Gcaud2530.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2530.t1
Unique Name	Gcaud2530.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	553

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_290_length_32094_cov_4.541512	contig	NODE_290_length_32094_cov_4.541512:11954..13612 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	29730.Gorai.013G260300.1
Preferred name	DDB2
PFAMs	WD40
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K10140
KEGG Pathway	ko03420,ko04115,ko04120,ko05161,ko05200,ko05202,ko05210,ko05212,ko05213,ko05214,ko05216,ko05217,ko05218,ko05220,ko05222,ko05223,ko05224,ko05225,ko05226,map03420,map04115,map04120,map05161,map05200,map05202,map05210,map05212,map05213,map05214,map05216,map05217,map05218,map05220,map05222,map05223,map05224,map05225,map05226
KEGG Module	M00385
GOs	GO:0000151,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010224,GO:0031461,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0080008,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990234
Evalue	1.33e-72
EggNOG OGs	KOG4328@1\|root,KOG4328@2759\|Eukaryota,37P4Y@33090\|Viridiplantae,3GB40@35493\|Streptophyta
Description	Protein DAMAGED DNA-BINDING
COG category	S
BRITE	ko00000,ko00001,ko00002,ko03400,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2530	Gcaud2530	Gracilaria caudata M_176_S67 male	gene	NODE_290_length_32094_cov_4.541512 11954..13612 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2530.t1.start1	Gcaud2530.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_290_length_32094_cov_4.541512 11954..11956 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2530.t1.CDS1	Gcaud2530.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_290_length_32094_cov_4.541512 11954..13612 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2530.t1.exon1	Gcaud2530.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_290_length_32094_cov_4.541512 11954..13612 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2530.t1.stop1	Gcaud2530.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_290_length_32094_cov_4.541512 13610..13612 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2530.t1	Gcaud2530.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_290_length_32094_cov_4.541512 11954..13612 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_290_length_32094_cov_4.541512:11954..13612+
coding sequence from alignment at NODE_290_length_32094_cov_4.541512:11954..13612+

mRNA sequence

>Gcaud2530.t1 ID=Gcaud2530.t1|Name=Gcaud2530.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=553bp
MATRIPAGDERTGLLLRKRYQSVGCYYCRDNNLTHRFDHIHTTCPLRPCF
LCKKSGHTSLDCPYRTRPNAHTQTLRRILRNRERLAHLHHFTRERETNSS
LDRLNVALPYVRNRQFDCQLAFFGLRAHAKRVTALEWHPSGRYLLSGDKA
GALRVLALTNSLRDAALDPTVQPLFDAEPSQVHYCNINNIVFENNPDICY
TSSSDGKVSALRIPLLRGVPTRPTEDPVHAYDTIANLNPNGWQGSVSQFK
MVYGMSFDRKRNCLYIGASDGSIRRFDPRQPADDSADIKSKFHASKVTCI
DVNPINSDLVVTASNDAHVCLWDARKFVETHSLGWYRHDRVVSSAYFSPN
TGSKLLTTALDNKLRVWQDLHSFQGSVNDHKNGSPLEIVHSHDFHRHLTA
FRAVWDPKDWTDDLFMCGRFLGDAYLDGEEEDTANILHPVDLFSVKAGTV
VHSLMDSGVPLICTSNKFSPTSDVIATAASGHLIFWSPSLKDKNDEDGVE
RGKKYRRSGKRDADDDGDGDDDDRGGAPGPKKKLKTVIAKSTRRSTRSRS
KV*

spliced messenger RNA

>Gcaud2530.t1 ID=Gcaud2530.t1|Name=Gcaud2530.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1659bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:11954..13612+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACGCGCATCCCCGCCGGCGATGAGCGAACCGGCCTTCTGCTAAG
AAAGCGCTACCAGTCCGTTGGTTGCTACTACTGTCGTGACAACAACCTCA
CCCATCGTTTCGACCACATCCACACCACCTGTCCTCTTCGTCCTTGCTTT
CTTTGCAAGAAGAGTGGACATACTTCTTTGGATTGCCCGTATCGAACCAG
GCCTAACGCACACACTCAAACGCTCAGACGAATCTTACGAAACAGAGAAC
GACTGGCTCACTTGCATCATTTCACCAGGGAACGAGAGACAAACTCTTCG
CTGGATCGATTGAATGTTGCACTGCCATATGTAAGAAACAGACAGTTTGA
TTGTCAGCTTGCCTTTTTTGGTTTAAGGGCGCATGCAAAACGCGTCACTG
CTTTAGAATGGCATCCTTCTGGCCGCTACTTATTGTCGGGTGATAAGGCG
GGCGCCCTAAGAGTGCTTGCCCTCACAAATAGTTTGAGAGACGCTGCCCT
TGATCCCACTGTACAGCCACTGTTTGACGCAGAACCTTCGCAGGTGCATT
ATTGTAACATCAACAACATCGTCTTTGAAAACAATCCAGACATCTGTTAC
ACCTCTAGCAGTGATGGCAAGGTATCCGCGTTGAGGATACCTTTGCTGCG
AGGAGTTCCCACGCGGCCAACTGAAGATCCGGTGCATGCTTACGACACCA
TTGCTAACCTTAATCCAAACGGATGGCAGGGAAGTGTCTCTCAGTTTAAG
ATGGTCTATGGTATGTCCTTTGATAGAAAACGAAATTGTTTATATATCGG
TGCTTCGGATGGTTCAATTCGTCGCTTTGACCCCAGACAACCTGCCGATG
ACTCTGCAGATATCAAGTCCAAGTTTCACGCATCAAAGGTAACATGTATT
GACGTAAATCCCATCAATTCAGACTTGGTTGTCACTGCAAGTAATGATGC
GCACGTTTGCTTATGGGATGCTCGCAAGTTTGTGGAGACTCATTCGTTAG
GATGGTACAGGCATGACCGAGTCGTATCCTCCGCATACTTTTCTCCCAAC
ACCGGATCTAAATTGCTTACCACCGCTTTGGATAACAAGCTGCGGGTGTG
GCAAGACCTGCATTCATTCCAAGGCTCGGTAAACGATCATAAGAATGGTA
GTCCGTTAGAAATAGTTCACTCTCACGATTTCCATCGCCATCTCACTGCG
TTTCGCGCCGTATGGGATCCAAAGGATTGGACAGATGACTTGTTCATGTG
TGGAAGGTTTCTTGGGGATGCGTATCTTGATGGAGAAGAAGAGGACACCG
CAAATATTCTGCATCCGGTGGACTTGTTTTCTGTCAAGGCTGGCACTGTG
GTCCACTCGCTTATGGATTCGGGTGTACCTCTCATTTGCACCAGTAATAA
GTTTTCACCCACTTCTGATGTGATAGCCACGGCCGCCTCGGGCCATCTGA
TATTTTGGTCTCCTTCATTAAAGGACAAGAACGATGAGGATGGTGTAGAA
AGAGGAAAGAAATATAGAAGATCTGGTAAGAGAgatgctgatgatgatgg
agacggtgatgacgatgatCGAGGTGGAGCTCCAGGCCCGAAAAAGAAGC
TCAAGACCGTCATTGCGAAATCCACAAGAAGATCAACAAGGTCACGTTCC
AAGGTGTAA

protein sequence of Gcaud2530.t1

>Gcaud2530.t1 ID=Gcaud2530.t1|Name=Gcaud2530.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=553bp
MATRIPAGDERTGLLLRKRYQSVGCYYCRDNNLTHRFDHIHTTCPLRPCF
LCKKSGHTSLDCPYRTRPNAHTQTLRRILRNRERLAHLHHFTRERETNSS
LDRLNVALPYVRNRQFDCQLAFFGLRAHAKRVTALEWHPSGRYLLSGDKA
GALRVLALTNSLRDAALDPTVQPLFDAEPSQVHYCNINNIVFENNPDICY
TSSSDGKVSALRIPLLRGVPTRPTEDPVHAYDTIANLNPNGWQGSVSQFK
MVYGMSFDRKRNCLYIGASDGSIRRFDPRQPADDSADIKSKFHASKVTCI
DVNPINSDLVVTASNDAHVCLWDARKFVETHSLGWYRHDRVVSSAYFSPN
TGSKLLTTALDNKLRVWQDLHSFQGSVNDHKNGSPLEIVHSHDFHRHLTA
FRAVWDPKDWTDDLFMCGRFLGDAYLDGEEEDTANILHPVDLFSVKAGTV
VHSLMDSGVPLICTSNKFSPTSDVIATAASGHLIFWSPSLKDKNDEDGVE
RGKKYRRSGKRDADDDGDGDDDDRGGAPGPKKKLKTVIAKSTRRSTRSRS
KV*

mRNA from alignment at NODE_290_length_32094_cov_4.541512:11954..13612+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2530.t1 ID=Gcaud2530.t1|Name=Gcaud2530.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1659bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:11954..13612+ (Gracilaria caudata M_176_S67 male)
ATGGCCACGCGCATCCCCGCCGGCGATGAGCGAACCGGCCTTCTGCTAAG
AAAGCGCTACCAGTCCGTTGGTTGCTACTACTGTCGTGACAACAACCTCA
CCCATCGTTTCGACCACATCCACACCACCTGTCCTCTTCGTCCTTGCTTT
CTTTGCAAGAAGAGTGGACATACTTCTTTGGATTGCCCGTATCGAACCAG
GCCTAACGCACACACTCAAACGCTCAGACGAATCTTACGAAACAGAGAAC
GACTGGCTCACTTGCATCATTTCACCAGGGAACGAGAGACAAACTCTTCG
CTGGATCGATTGAATGTTGCACTGCCATATGTAAGAAACAGACAGTTTGA
TTGTCAGCTTGCCTTTTTTGGTTTAAGGGCGCATGCAAAACGCGTCACTG
CTTTAGAATGGCATCCTTCTGGCCGCTACTTATTGTCGGGTGATAAGGCG
GGCGCCCTAAGAGTGCTTGCCCTCACAAATAGTTTGAGAGACGCTGCCCT
TGATCCCACTGTACAGCCACTGTTTGACGCAGAACCTTCGCAGGTGCATT
ATTGTAACATCAACAACATCGTCTTTGAAAACAATCCAGACATCTGTTAC
ACCTCTAGCAGTGATGGCAAGGTATCCGCGTTGAGGATACCTTTGCTGCG
AGGAGTTCCCACGCGGCCAACTGAAGATCCGGTGCATGCTTACGACACCA
TTGCTAACCTTAATCCAAACGGATGGCAGGGAAGTGTCTCTCAGTTTAAG
ATGGTCTATGGTATGTCCTTTGATAGAAAACGAAATTGTTTATATATCGG
TGCTTCGGATGGTTCAATTCGTCGCTTTGACCCCAGACAACCTGCCGATG
ACTCTGCAGATATCAAGTCCAAGTTTCACGCATCAAAGGTAACATGTATT
GACGTAAATCCCATCAATTCAGACTTGGTTGTCACTGCAAGTAATGATGC
GCACGTTTGCTTATGGGATGCTCGCAAGTTTGTGGAGACTCATTCGTTAG
GATGGTACAGGCATGACCGAGTCGTATCCTCCGCATACTTTTCTCCCAAC
ACCGGATCTAAATTGCTTACCACCGCTTTGGATAACAAGCTGCGGGTGTG
GCAAGACCTGCATTCATTCCAAGGCTCGGTAAACGATCATAAGAATGGTA
GTCCGTTAGAAATAGTTCACTCTCACGATTTCCATCGCCATCTCACTGCG
TTTCGCGCCGTATGGGATCCAAAGGATTGGACAGATGACTTGTTCATGTG
TGGAAGGTTTCTTGGGGATGCGTATCTTGATGGAGAAGAAGAGGACACCG
CAAATATTCTGCATCCGGTGGACTTGTTTTCTGTCAAGGCTGGCACTGTG
GTCCACTCGCTTATGGATTCGGGTGTACCTCTCATTTGCACCAGTAATAA
GTTTTCACCCACTTCTGATGTGATAGCCACGGCCGCCTCGGGCCATCTGA
TATTTTGGTCTCCTTCATTAAAGGACAAGAACGATGAGGATGGTGTAGAA
AGAGGAAAGAAATATAGAAGATCTGGTAAGAGAgatgctgatgatgatgg
agacggtgatgacgatgatCGAGGTGGAGCTCCAGGCCCGAAAAAGAAGC
TCAAGACCGTCATTGCGAAATCCACAAGAAGATCAACAAGGTCACGTTCC
AAGGTGTAA

Coding sequence (CDS) from alignment at NODE_290_length_32094_cov_4.541512:11954..13612+

>Gcaud2530.t1 ID=Gcaud2530.t1|Name=Gcaud2530.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1659bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:11954..13612+ (Gracilaria caudata M_176_S67 male)
ATGGCCACGCGCATCCCCGCCGGCGATGAGCGAACCGGCCTTCTGCTAAG
AAAGCGCTACCAGTCCGTTGGTTGCTACTACTGTCGTGACAACAACCTCA
CCCATCGTTTCGACCACATCCACACCACCTGTCCTCTTCGTCCTTGCTTT
CTTTGCAAGAAGAGTGGACATACTTCTTTGGATTGCCCGTATCGAACCAG
GCCTAACGCACACACTCAAACGCTCAGACGAATCTTACGAAACAGAGAAC
GACTGGCTCACTTGCATCATTTCACCAGGGAACGAGAGACAAACTCTTCG
CTGGATCGATTGAATGTTGCACTGCCATATGTAAGAAACAGACAGTTTGA
TTGTCAGCTTGCCTTTTTTGGTTTAAGGGCGCATGCAAAACGCGTCACTG
CTTTAGAATGGCATCCTTCTGGCCGCTACTTATTGTCGGGTGATAAGGCG
GGCGCCCTAAGAGTGCTTGCCCTCACAAATAGTTTGAGAGACGCTGCCCT
TGATCCCACTGTACAGCCACTGTTTGACGCAGAACCTTCGCAGGTGCATT
ATTGTAACATCAACAACATCGTCTTTGAAAACAATCCAGACATCTGTTAC
ACCTCTAGCAGTGATGGCAAGGTATCCGCGTTGAGGATACCTTTGCTGCG
AGGAGTTCCCACGCGGCCAACTGAAGATCCGGTGCATGCTTACGACACCA
TTGCTAACCTTAATCCAAACGGATGGCAGGGAAGTGTCTCTCAGTTTAAG
ATGGTCTATGGTATGTCCTTTGATAGAAAACGAAATTGTTTATATATCGG
TGCTTCGGATGGTTCAATTCGTCGCTTTGACCCCAGACAACCTGCCGATG
ACTCTGCAGATATCAAGTCCAAGTTTCACGCATCAAAGGTAACATGTATT
GACGTAAATCCCATCAATTCAGACTTGGTTGTCACTGCAAGTAATGATGC
GCACGTTTGCTTATGGGATGCTCGCAAGTTTGTGGAGACTCATTCGTTAG
GATGGTACAGGCATGACCGAGTCGTATCCTCCGCATACTTTTCTCCCAAC
ACCGGATCTAAATTGCTTACCACCGCTTTGGATAACAAGCTGCGGGTGTG
GCAAGACCTGCATTCATTCCAAGGCTCGGTAAACGATCATAAGAATGGTA
GTCCGTTAGAAATAGTTCACTCTCACGATTTCCATCGCCATCTCACTGCG
TTTCGCGCCGTATGGGATCCAAAGGATTGGACAGATGACTTGTTCATGTG
TGGAAGGTTTCTTGGGGATGCGTATCTTGATGGAGAAGAAGAGGACACCG
CAAATATTCTGCATCCGGTGGACTTGTTTTCTGTCAAGGCTGGCACTGTG
GTCCACTCGCTTATGGATTCGGGTGTACCTCTCATTTGCACCAGTAATAA
GTTTTCACCCACTTCTGATGTGATAGCCACGGCCGCCTCGGGCCATCTGA
TATTTTGGTCTCCTTCATTAAAGGACAAGAACGATGAGGATGGTGTAGAA
AGAGGAAAGAAATATAGAAGATCTGGTAAGAGAgatgctgatgatgatgg
agacggtgatgacgatgatCGAGGTGGAGCTCCAGGCCCGAAAAAGAAGC
TCAAGACCGTCATTGCGAAATCCACAAGAAGATCAACAAGGTCACGTTCC
AAGGTGTAA