Gcaud2528.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2528.t1
Unique Name	Gcaud2528.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	344

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_290_length_32094_cov_4.541512	contig	NODE_290_length_32094_cov_4.541512:9447..10478 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13349.G1XR59
PFAMs	Methyltransf_16
Max annot lvl	4751\|Fungi
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006417,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032259,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:2000112,GO:2000765
Evalue	1.4e-10
EggNOG OGs	KOG2497@1\|root,KOG2497@2759\|Eukaryota,39S3Q@33154\|Opisthokonta,3NXXF@4751\|Fungi,3QN5G@4890\|Ascomycota
Description	Saccharomyces cerevisiae YJR129C
COG category	J

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2528	Gcaud2528	Gracilaria caudata M_176_S67 male	gene	NODE_290_length_32094_cov_4.541512 9447..10478 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2528.t1.stop1	Gcaud2528.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_290_length_32094_cov_4.541512 9447..9449 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2528.t1.CDS1	Gcaud2528.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_290_length_32094_cov_4.541512 9447..10478 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2528.t1.exon1	Gcaud2528.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_290_length_32094_cov_4.541512 9447..10478 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2528.t1.start1	Gcaud2528.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_290_length_32094_cov_4.541512 10476..10478 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2528.t1	Gcaud2528.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_290_length_32094_cov_4.541512 9447..10478 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_290_length_32094_cov_4.541512:9447..10478-
coding sequence from alignment at NODE_290_length_32094_cov_4.541512:9447..10478-

mRNA sequence

>Gcaud2528.t1 ID=Gcaud2528.t1|Name=Gcaud2528.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=344bp
MVMKEDQTTVRALLADLNKATILFGKAFRAGVPLRRIFDETQALFGDLAW
KTPVAQRALLRETVLYQSDLSRNIPEFCFGHSRCARFFRLLMDEVDRCSM
GDVDESVVELASQYCMRKQYTQMDVHRVHQMPDGDDVILSVSERFSDLGA
RVWEAGLCLCSQLFETQSAIRSDVRGATVLELGAGTGVSGPAYVKAGAKR
VLLTDYKQEVMDRIQENLRNNNVPDMVQTALLDANDLPTLRSFVIDFDID
VIIAADVTYDIDLVRIMVRAFSDLIAGPRVGYLLAADRNPETTSFVGQEL
SKTGLTIVKMDVSDTGYYSDRLLGSTSCKISTLRLTRSDRDIQ*

spliced messenger RNA

>Gcaud2528.t1 ID=Gcaud2528.t1|Name=Gcaud2528.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:9447..10478- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTATGAAGGAGGATCAAACCACCGTTCGCGCTCTGCTTGCAGATTT
GAACAAAGCTACCATTTTGTTCGGAAAAGCATTCAGAGCTGGTGTCCCTC
TTCGGAGGATTTTCGATGAAACGCAGGCTCTTTTTGGTGACTTGGCATGG
AAGACCCCTGTCGCACAGAGAGCTCTGTTACGAGAAACCGTTCTATACCA
GAGCGACCTTTCACGGAACATCCCCGAATTTTGCTTTGGGCATTCAAGAT
GTGCCCGCTTTTTCAGACTCCTAATGGACGAAGTGGATCGCTGCAGTATG
GGGGACGTCGACGAGTCAGTTGTGGAGCTAGCTTCACAATACTGTATGCG
GAAACAATATACGCAGATGGATGTTCATAGAGTGCACCAAATGCCTGACG
GTGACGACGTGATTCTTTCTGTGTCCGAACGCTTCAGCGATCTCGGAGCC
CGAGTCTGGGAGGCTGGTCTTTGCTTGTGCTCACAACTTTTTGAAACTCA
AAGTGCTATTCGGAGTGATGTGAGGGGAGCAACCGTACTCGAGCTTGGAG
CGGGTACGGGAGTATCTGGGCCGGCGTATGTGAAGGCTGGGGCGAAGCGT
GTTTTGCTCACGGACTACAAACAAGAGGTGATGGATAGAATACAAGAAAA
CCTTCGAAATAACAACGTTCCAGATATGGTGCAGACCGCACTACTAGATG
CGAATGACTTGCCTACGCTACGAAGCTTTGTCATCGATTTTGACATAGAC
GTCATCATAGCGGCTGATGTAACCTACGATATCGATCTGGTTAGGATCAT
GGTGCGTGCGTTTTCTGACTTGATCGCCGGACCTCGCGTTGGGTATCTCC
TCGCAGCTGATCGAAACCCCGAAACTACGTCCTTTGTGGGACAAGAACTA
TCCAAGACTGGATTGACAATTGTGAAGATGGATGTAAGCGATACAGGGTA
TTATTCTGATCGCTTGCTTGGATCTACAAGTTGCAAAATCTCGACTTTGA
GGCTAACCCGTAGTGACAGGGATATACAATAG

protein sequence of Gcaud2528.t1

>Gcaud2528.t1 ID=Gcaud2528.t1|Name=Gcaud2528.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=344bp
MVMKEDQTTVRALLADLNKATILFGKAFRAGVPLRRIFDETQALFGDLAW
KTPVAQRALLRETVLYQSDLSRNIPEFCFGHSRCARFFRLLMDEVDRCSM
GDVDESVVELASQYCMRKQYTQMDVHRVHQMPDGDDVILSVSERFSDLGA
RVWEAGLCLCSQLFETQSAIRSDVRGATVLELGAGTGVSGPAYVKAGAKR
VLLTDYKQEVMDRIQENLRNNNVPDMVQTALLDANDLPTLRSFVIDFDID
VIIAADVTYDIDLVRIMVRAFSDLIAGPRVGYLLAADRNPETTSFVGQEL
SKTGLTIVKMDVSDTGYYSDRLLGSTSCKISTLRLTRSDRDIQ*

mRNA from alignment at NODE_290_length_32094_cov_4.541512:9447..10478-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2528.t1 ID=Gcaud2528.t1|Name=Gcaud2528.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:9447..10478- (Gracilaria caudata M_176_S67 male)
ATGGTTATGAAGGAGGATCAAACCACCGTTCGCGCTCTGCTTGCAGATTT
GAACAAAGCTACCATTTTGTTCGGAAAAGCATTCAGAGCTGGTGTCCCTC
TTCGGAGGATTTTCGATGAAACGCAGGCTCTTTTTGGTGACTTGGCATGG
AAGACCCCTGTCGCACAGAGAGCTCTGTTACGAGAAACCGTTCTATACCA
GAGCGACCTTTCACGGAACATCCCCGAATTTTGCTTTGGGCATTCAAGAT
GTGCCCGCTTTTTCAGACTCCTAATGGACGAAGTGGATCGCTGCAGTATG
GGGGACGTCGACGAGTCAGTTGTGGAGCTAGCTTCACAATACTGTATGCG
GAAACAATATACGCAGATGGATGTTCATAGAGTGCACCAAATGCCTGACG
GTGACGACGTGATTCTTTCTGTGTCCGAACGCTTCAGCGATCTCGGAGCC
CGAGTCTGGGAGGCTGGTCTTTGCTTGTGCTCACAACTTTTTGAAACTCA
AAGTGCTATTCGGAGTGATGTGAGGGGAGCAACCGTACTCGAGCTTGGAG
CGGGTACGGGAGTATCTGGGCCGGCGTATGTGAAGGCTGGGGCGAAGCGT
GTTTTGCTCACGGACTACAAACAAGAGGTGATGGATAGAATACAAGAAAA
CCTTCGAAATAACAACGTTCCAGATATGGTGCAGACCGCACTACTAGATG
CGAATGACTTGCCTACGCTACGAAGCTTTGTCATCGATTTTGACATAGAC
GTCATCATAGCGGCTGATGTAACCTACGATATCGATCTGGTTAGGATCAT
GGTGCGTGCGTTTTCTGACTTGATCGCCGGACCTCGCGTTGGGTATCTCC
TCGCAGCTGATCGAAACCCCGAAACTACGTCCTTTGTGGGACAAGAACTA
TCCAAGACTGGATTGACAATTGTGAAGATGGATGTAAGCGATACAGGGTA
TTATTCTGATCGCTTGCTTGGATCTACAAGTTGCAAAATCTCGACTTTGA
GGCTAACCCGTAGTGACAGGGATATACAATAG

Coding sequence (CDS) from alignment at NODE_290_length_32094_cov_4.541512:9447..10478-

>Gcaud2528.t1 ID=Gcaud2528.t1|Name=Gcaud2528.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1032bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:9447..10478- (Gracilaria caudata M_176_S67 male)
ATGGTTATGAAGGAGGATCAAACCACCGTTCGCGCTCTGCTTGCAGATTT
GAACAAAGCTACCATTTTGTTCGGAAAAGCATTCAGAGCTGGTGTCCCTC
TTCGGAGGATTTTCGATGAAACGCAGGCTCTTTTTGGTGACTTGGCATGG
AAGACCCCTGTCGCACAGAGAGCTCTGTTACGAGAAACCGTTCTATACCA
GAGCGACCTTTCACGGAACATCCCCGAATTTTGCTTTGGGCATTCAAGAT
GTGCCCGCTTTTTCAGACTCCTAATGGACGAAGTGGATCGCTGCAGTATG
GGGGACGTCGACGAGTCAGTTGTGGAGCTAGCTTCACAATACTGTATGCG
GAAACAATATACGCAGATGGATGTTCATAGAGTGCACCAAATGCCTGACG
GTGACGACGTGATTCTTTCTGTGTCCGAACGCTTCAGCGATCTCGGAGCC
CGAGTCTGGGAGGCTGGTCTTTGCTTGTGCTCACAACTTTTTGAAACTCA
AAGTGCTATTCGGAGTGATGTGAGGGGAGCAACCGTACTCGAGCTTGGAG
CGGGTACGGGAGTATCTGGGCCGGCGTATGTGAAGGCTGGGGCGAAGCGT
GTTTTGCTCACGGACTACAAACAAGAGGTGATGGATAGAATACAAGAAAA
CCTTCGAAATAACAACGTTCCAGATATGGTGCAGACCGCACTACTAGATG
CGAATGACTTGCCTACGCTACGAAGCTTTGTCATCGATTTTGACATAGAC
GTCATCATAGCGGCTGATGTAACCTACGATATCGATCTGGTTAGGATCAT
GGTGCGTGCGTTTTCTGACTTGATCGCCGGACCTCGCGTTGGGTATCTCC
TCGCAGCTGATCGAAACCCCGAAACTACGTCCTTTGTGGGACAAGAACTA
TCCAAGACTGGATTGACAATTGTGAAGATGGATGTAAGCGATACAGGGTA
TTATTCTGATCGCTTGCTTGGATCTACAAGTTGCAAAATCTCGACTTTGA
GGCTAACCCGTAGTGACAGGGATATACAATAG