Gcaud2526.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2526.t1
Unique Name	Gcaud2526.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	281

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_290_length_32094_cov_4.541512	contig	NODE_290_length_32094_cov_4.541512:6146..6988 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LDV8
Preferred name	RPI2
PFAMs	Rib_5-P_isom_A
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00434
KEGG ko	ko:K01807
KEGG Reaction	R01056
KEGG Pathway	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG Module	M00004,M00007,M00165,M00167,M00580
GOs	GO:0000003,GO:0000271,GO:0003006,GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006073,GO:0006139,GO:0006213,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009116,GO:0009119,GO:0009163,GO:0009250,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009791,GO:0009941,GO:0009987,GO:0010033,GO:0010228,GO:0015977,GO:0015979,GO:0016020,GO:0016051,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019253,GO:0019438,GO:0019685,GO:0022414,GO:0030243,GO:0030244,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0033692,GO:0034357,GO:0034404,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042455,GO:0042651,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046108,GO:0046109,GO:0046131,GO:0046132,GO:0046134,GO:0046483,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051273,GO:0051274,GO:0051704,GO:0051707,GO:0055035,GO:0055086,GO:0061458,GO:0071704,GO:0072527,GO:0072528,GO:0080167,GO:0098542,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue	4.47e-121
EggNOG OGs	COG0120@1\|root,KOG3075@2759\|Eukaryota
EC	5.3.1.6
Description	ribose-5-phosphate isomerase activity
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2526	Gcaud2526	Gracilaria caudata M_176_S67 male	gene	NODE_290_length_32094_cov_4.541512 6146..6988 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2526.t1.start1	Gcaud2526.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_290_length_32094_cov_4.541512 6146..6148 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2526.t1.CDS1	Gcaud2526.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_290_length_32094_cov_4.541512 6146..6988 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2526.t1.exon1	Gcaud2526.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_290_length_32094_cov_4.541512 6146..6988 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2526.t1.stop1	Gcaud2526.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_290_length_32094_cov_4.541512 6986..6988 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2526.t1	Gcaud2526.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_290_length_32094_cov_4.541512 6146..6988 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_290_length_32094_cov_4.541512:6146..6988+
coding sequence from alignment at NODE_290_length_32094_cov_4.541512:6146..6988+

mRNA sequence

>Gcaud2526.t1 ID=Gcaud2526.t1|Name=Gcaud2526.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=281bp
MSAFVSPLSVGRAQNAPRLRVCVRAPSTIPSRFAGARVRAPMGMAMAPSV
DELKKQTGYKAVDDYVTSGMVVGLGTGSTAKFAVDRLGEKLKSGELSDIV
AIPTSIRTKEQAESLGIPLVTLDTHPVLDVAIDGADEVDPQLNLVKGRGG
ALLREKMVEVQAKKFIVIVDESKLVDGLGVSGAMPVEVTPFCWEFNMNRL
LNLDSIKGCTAKLRMDGEKPYVTDNDNYIVDLYFDKPIPDAALAASQIES
LVGVVEHGLFLGMSTAVIIAGAQGVYVKEP*

spliced messenger RNA

>Gcaud2526.t1 ID=Gcaud2526.t1|Name=Gcaud2526.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=843bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:6146..6988+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCGTTCGTGTCTCCGCTGTCTGTGGGTCGGGCGCAGAACGCGCC
GCGACTGCGCGTGTGTGTGCGAGCGCCGTCGACGATTCCGTCGCGTTTTG
CGGGTGCTCGCGTGCGTGCGCcgatggggatggcgatggcgccgtcggtg
gacgaGCTTAAGAAGCAGACGGGCTATAAGGCGGTGGATGATTACGTCAC
GTCCGGTATGGTTGTCGGTCTTGGTACCGGCTCTACTGCAAAGTTTGCCG
TCGATCGGCTCGGAGAGAAGCTCAAGTCGGGCGAGCTAAGCGATATCGTG
GCCATTCCTACTTCCATTCGCACCAAGGAGCAGGCCGAATCGTTGGGTAT
TCCACTCGTCACGCTCGATACGCACCCCGTTTTGGACGTCGCCATTGATG
GTGCTGATGAGGTGGACCCGCAGTTGAATCTTGTCAAGGGGCGTGGCGGT
GCGTTGCTCAGAGAGAAGATGGTCGAGGTACAGGCCAAAAAGTTCATCGT
TATTGTGGATGAGAGCAAACTCGTCGATGGACTCGGCGTCAGCGGCGCCA
TGCCCGTCGAGGTCACCCCGTTCTGTTGGGAGTTTAACATGAACCGACTG
CTCAATCTGGACAGTATCAAGGGATGTACCGCAAAGCTTAGGATGGACGG
AGAAAAGCCCTATGTAACTGACAATGACAATTACATCGTCGACCTCTACT
TTGACAAACCTATCCCCGACGCCGCCCTGGCTGCCAGTCAAATAGAAAGT
CTGGTTGGTGTAGTTGAGCATGGGCTCTTCCTTGGCATGTCTACCGCCGT
CATCATTGCCGGAGCTCAGGGCGTTTACGTCAAGGAGCCGTAA

protein sequence of Gcaud2526.t1

>Gcaud2526.t1 ID=Gcaud2526.t1|Name=Gcaud2526.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=281bp
MSAFVSPLSVGRAQNAPRLRVCVRAPSTIPSRFAGARVRAPMGMAMAPSV
DELKKQTGYKAVDDYVTSGMVVGLGTGSTAKFAVDRLGEKLKSGELSDIV
AIPTSIRTKEQAESLGIPLVTLDTHPVLDVAIDGADEVDPQLNLVKGRGG
ALLREKMVEVQAKKFIVIVDESKLVDGLGVSGAMPVEVTPFCWEFNMNRL
LNLDSIKGCTAKLRMDGEKPYVTDNDNYIVDLYFDKPIPDAALAASQIES
LVGVVEHGLFLGMSTAVIIAGAQGVYVKEP*

mRNA from alignment at NODE_290_length_32094_cov_4.541512:6146..6988+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2526.t1 ID=Gcaud2526.t1|Name=Gcaud2526.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=843bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:6146..6988+ (Gracilaria caudata M_176_S67 male)
ATGAGTGCGTTCGTGTCTCCGCTGTCTGTGGGTCGGGCGCAGAACGCGCC
GCGACTGCGCGTGTGTGTGCGAGCGCCGTCGACGATTCCGTCGCGTTTTG
CGGGTGCTCGCGTGCGTGCGCcgatggggatggcgatggcgccgtcggtg
gacgaGCTTAAGAAGCAGACGGGCTATAAGGCGGTGGATGATTACGTCAC
GTCCGGTATGGTTGTCGGTCTTGGTACCGGCTCTACTGCAAAGTTTGCCG
TCGATCGGCTCGGAGAGAAGCTCAAGTCGGGCGAGCTAAGCGATATCGTG
GCCATTCCTACTTCCATTCGCACCAAGGAGCAGGCCGAATCGTTGGGTAT
TCCACTCGTCACGCTCGATACGCACCCCGTTTTGGACGTCGCCATTGATG
GTGCTGATGAGGTGGACCCGCAGTTGAATCTTGTCAAGGGGCGTGGCGGT
GCGTTGCTCAGAGAGAAGATGGTCGAGGTACAGGCCAAAAAGTTCATCGT
TATTGTGGATGAGAGCAAACTCGTCGATGGACTCGGCGTCAGCGGCGCCA
TGCCCGTCGAGGTCACCCCGTTCTGTTGGGAGTTTAACATGAACCGACTG
CTCAATCTGGACAGTATCAAGGGATGTACCGCAAAGCTTAGGATGGACGG
AGAAAAGCCCTATGTAACTGACAATGACAATTACATCGTCGACCTCTACT
TTGACAAACCTATCCCCGACGCCGCCCTGGCTGCCAGTCAAATAGAAAGT
CTGGTTGGTGTAGTTGAGCATGGGCTCTTCCTTGGCATGTCTACCGCCGT
CATCATTGCCGGAGCTCAGGGCGTTTACGTCAAGGAGCCGTAA

Coding sequence (CDS) from alignment at NODE_290_length_32094_cov_4.541512:6146..6988+

>Gcaud2526.t1 ID=Gcaud2526.t1|Name=Gcaud2526.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=843bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:6146..6988+ (Gracilaria caudata M_176_S67 male)
ATGAGTGCGTTCGTGTCTCCGCTGTCTGTGGGTCGGGCGCAGAACGCGCC
GCGACTGCGCGTGTGTGTGCGAGCGCCGTCGACGATTCCGTCGCGTTTTG
CGGGTGCTCGCGTGCGTGCGCcgatggggatggcgatggcgccgtcggtg
gacgaGCTTAAGAAGCAGACGGGCTATAAGGCGGTGGATGATTACGTCAC
GTCCGGTATGGTTGTCGGTCTTGGTACCGGCTCTACTGCAAAGTTTGCCG
TCGATCGGCTCGGAGAGAAGCTCAAGTCGGGCGAGCTAAGCGATATCGTG
GCCATTCCTACTTCCATTCGCACCAAGGAGCAGGCCGAATCGTTGGGTAT
TCCACTCGTCACGCTCGATACGCACCCCGTTTTGGACGTCGCCATTGATG
GTGCTGATGAGGTGGACCCGCAGTTGAATCTTGTCAAGGGGCGTGGCGGT
GCGTTGCTCAGAGAGAAGATGGTCGAGGTACAGGCCAAAAAGTTCATCGT
TATTGTGGATGAGAGCAAACTCGTCGATGGACTCGGCGTCAGCGGCGCCA
TGCCCGTCGAGGTCACCCCGTTCTGTTGGGAGTTTAACATGAACCGACTG
CTCAATCTGGACAGTATCAAGGGATGTACCGCAAAGCTTAGGATGGACGG
AGAAAAGCCCTATGTAACTGACAATGACAATTACATCGTCGACCTCTACT
TTGACAAACCTATCCCCGACGCCGCCCTGGCTGCCAGTCAAATAGAAAGT
CTGGTTGGTGTAGTTGAGCATGGGCTCTTCCTTGGCATGTCTACCGCCGT
CATCATTGCCGGAGCTCAGGGCGTTTACGTCAAGGAGCCGTAA