Gcaud2524.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2524.t1
Unique NameGcaud2524.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_290_length_32094_cov_4.541512contigNODE_290_length_32094_cov_4.541512:2406..2849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702724.1
PFAMsDUF493
Max annot lvl2759|Eukaryota
KEGG koko:K09158
Evalue7.24e-42
EggNOG OGs2E2JJ@1|root,2S9SY@2759|Eukaryota
DescriptionProtein of unknown function (DUF493)
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2524Gcaud2524Gracilaria caudata M_176_S67 malegeneNODE_290_length_32094_cov_4.541512 2406..2849 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2524.t1.stop1Gcaud2524.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_290_length_32094_cov_4.541512 2406..2408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2524.t1.CDS1Gcaud2524.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_290_length_32094_cov_4.541512 2406..2849 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2524.t1.exon1Gcaud2524.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_290_length_32094_cov_4.541512 2406..2849 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2524.t1.start1Gcaud2524.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_290_length_32094_cov_4.541512 2847..2849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2524.t1Gcaud2524.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_290_length_32094_cov_4.541512 2406..2849 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2524.t1 ID=Gcaud2524.t1|Name=Gcaud2524.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=148bp
MAAFVKAFVARGTLPLLARPQCLTPLVRARHHNSNRRARITMIRGFPNNF
NNDFAHNSGDRRVFDELVDFPCVFTFKVIGMAQGDFMGDIVDSVATALET
DKKYLKTSYRDKGKYRSITLKAPVNTAEQIYSVYAAIDRDPRVKFKF*
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spliced messenger RNA

>Gcaud2524.t1 ID=Gcaud2524.t1|Name=Gcaud2524.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=444bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:2406..2849- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCTTCGTCAAAGCGTTCGTTGCGCGAGGCACCCTGCCCTTACT
CGCGCGCCCACAATGTCTGACGCCTCTGGTTAGAGCTCGTCATCATAACT
CAAATCGTCGGGCTCGAATAACTATGATTCGCGGCTTCCCGAACAATTTC
AACAACGACTTCGCGCATAATTCTGGCGACCGTCGTGTGTTTGATGAGCT
GGTTGACTTTCCTTGCGTTTTCACGTTCAAGGTGATTGGGATGGCACAAG
GCGATTTCATGGGCGATATTGTCGATAGCGTCGCTACCGCCCTGGAAACA
GACAAGAAGTACTTGAAAACAAGCTACAGAGACAAGGGAAAATATCGTAG
CATTACGCTCAAAGCGCCGGTTAACACTGCAGAACAGATATATAGCGTGT
ACGCAGCGATTGATCGCGACCCAAGGGTCAAGTTCAAATTCTAG
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protein sequence of Gcaud2524.t1

>Gcaud2524.t1 ID=Gcaud2524.t1|Name=Gcaud2524.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=148bp
MAAFVKAFVARGTLPLLARPQCLTPLVRARHHNSNRRARITMIRGFPNNF
NNDFAHNSGDRRVFDELVDFPCVFTFKVIGMAQGDFMGDIVDSVATALET
DKKYLKTSYRDKGKYRSITLKAPVNTAEQIYSVYAAIDRDPRVKFKF*
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mRNA from alignment at NODE_290_length_32094_cov_4.541512:2406..2849-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2524.t1 ID=Gcaud2524.t1|Name=Gcaud2524.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=444bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:2406..2849- (Gracilaria caudata M_176_S67 male)
ATGGCCGCCTTCGTCAAAGCGTTCGTTGCGCGAGGCACCCTGCCCTTACT
CGCGCGCCCACAATGTCTGACGCCTCTGGTTAGAGCTCGTCATCATAACT
CAAATCGTCGGGCTCGAATAACTATGATTCGCGGCTTCCCGAACAATTTC
AACAACGACTTCGCGCATAATTCTGGCGACCGTCGTGTGTTTGATGAGCT
GGTTGACTTTCCTTGCGTTTTCACGTTCAAGGTGATTGGGATGGCACAAG
GCGATTTCATGGGCGATATTGTCGATAGCGTCGCTACCGCCCTGGAAACA
GACAAGAAGTACTTGAAAACAAGCTACAGAGACAAGGGAAAATATCGTAG
CATTACGCTCAAAGCGCCGGTTAACACTGCAGAACAGATATATAGCGTGT
ACGCAGCGATTGATCGCGACCCAAGGGTCAAGTTCAAATTCTAG
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Coding sequence (CDS) from alignment at NODE_290_length_32094_cov_4.541512:2406..2849-

>Gcaud2524.t1 ID=Gcaud2524.t1|Name=Gcaud2524.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=444bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:2406..2849- (Gracilaria caudata M_176_S67 male)
ATGGCCGCCTTCGTCAAAGCGTTCGTTGCGCGAGGCACCCTGCCCTTACT
CGCGCGCCCACAATGTCTGACGCCTCTGGTTAGAGCTCGTCATCATAACT
CAAATCGTCGGGCTCGAATAACTATGATTCGCGGCTTCCCGAACAATTTC
AACAACGACTTCGCGCATAATTCTGGCGACCGTCGTGTGTTTGATGAGCT
GGTTGACTTTCCTTGCGTTTTCACGTTCAAGGTGATTGGGATGGCACAAG
GCGATTTCATGGGCGATATTGTCGATAGCGTCGCTACCGCCCTGGAAACA
GACAAGAAGTACTTGAAAACAAGCTACAGAGACAAGGGAAAATATCGTAG
CATTACGCTCAAAGCGCCGGTTAACACTGCAGAACAGATATATAGCGTGT
ACGCAGCGATTGATCGCGACCCAAGGGTCAAGTTCAAATTCTAG
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