Gcaud2521.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2521.t1
Unique Name	Gcaud2521.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	599

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2402_length_5794_cov_3.401894	contig	NODE_2402_length_5794_cov_3.401894:1957..3753 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMM153CT
Max annot lvl	45157.CMM153CT\|-
KEGG ko	ko:K16075
KEGG TC	1.A.35.5
Evalue	7.48e-60
EggNOG OGs	KOG2662@1\|root,KOG2662@2759\|Eukaryota
Description	magnesium ion transmembrane transporter activity
COG category	C
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2521	Gcaud2521	Gracilaria caudata M_176_S67 male	gene	NODE_2402_length_5794_cov_3.401894 1957..3753 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2521.t1.start1	Gcaud2521.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2402_length_5794_cov_3.401894 1957..1959 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2521.t1.CDS1	Gcaud2521.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2402_length_5794_cov_3.401894 1957..3753 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2521.t1.exon1	Gcaud2521.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2402_length_5794_cov_3.401894 1957..3753 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2521.t1.stop1	Gcaud2521.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2402_length_5794_cov_3.401894 3751..3753 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2521.t1	Gcaud2521.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2402_length_5794_cov_3.401894 1957..3753 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2402_length_5794_cov_3.401894:1957..3753+
coding sequence from alignment at NODE_2402_length_5794_cov_3.401894:1957..3753+

mRNA sequence

>Gcaud2521.t1 ID=Gcaud2521.t1|Name=Gcaud2521.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=599bp
MPRAASDPQQRPRSPPEAPPPIRLPSLRATSLTVDMVRDAADAYSISVPP
APPARSPAASPRLRSSATFGVEPTPVSFSEYVASELASDQAAREPFGVSF
APAAPRADATPAPGIGAGGGGGGGGGGGGGSGGVGVGVPLAADPFDSDSE
GGGATASLVEAATDAIPRSETEPNLALASATPIGASHGTQKRPQLSHFTQ
HSSGGGGARVGASSKARYTDGKLDCIQIDAHGNVSNRQMRRADILQEARS
TFPGSQPPPHVVNKWLNGDAPLPSPELKQFSRWFEPHAVANRKTAQKALR
DYLRNSLQARDIRQVDPAFAAKPALWVRHSAIVVSLEGLRAIILYNKMFL
FDPANDKTQQLLYIATQSITARPDAENPQPFEFRALEGILIYLAMGLEIE
FSDMKPRIEDYLHQMPNELTTKMLEELRLKKQQLNQFHSRANSVRSVLEN
LLDEDDEMASMYLTEKHISENYARSAVDHSEVETLLEAYLQAIDLHVSHA
SLLNDAIEDTEDLIMIHLDTLRNRLLSVELAMSVVSMMFGFGGVVAGVFG
MNINIPLFDATASRFWFLAVVLLITITVVCVSWLALVMLRRRGLYNFY*

spliced messenger RNA

>Gcaud2521.t1 ID=Gcaud2521.t1|Name=Gcaud2521.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1797bp|location=Sequence derived from alignment at NODE_2402_length_5794_cov_3.401894:1957..3753+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGCGCCGCGTCCGATCCGCAACAACGCCCGCGCTCGCCGCCCGA
GGCGCCGCCGCCCATCCGGCTGCCGTCGCTGCGCGCCACCTCCCTCACCG
TGGACATGGTGCGCGACGCCGCCGACGCGTACTCCATCTCCGTGccgccc
gcgccgcccgcgcgctcgccggccgcgtcgccgcgcctgcGATCGTCCGC
CACGTTTGGCGTGGAGCCCACGCCGGTGTCGTTCAGCGAGTACGTGGCGT
CCGAACTGGCCAGCGACCAGgcggcgcgcgagccgttcggcgtgtcgttt
gcgcccgccgcgccgcgcgcggacgccacgcccgcgcCGGGGATTGGTGC
Gggcggtggcggcggcggtggcggcggtggcggtggtgggagtgggggcg
tgggcgtgggcgtgccgcttgcggcggATCCGTTTGACTCCGACTCGGAG
GGCGGCGGCGCTACGGCCAGTTTGGTGGAGGCAGCCACCGACGCCATTCC
GCGCTCCGAGACCGAACCGAATCTTGCGCTCGCGTCTGCCACGCCCATCG
GCGCGTCGCACGGCACGCAAAAACGACCGCAGCTGTCGCACTTCACGCAG
CACAgcagcggcggcggcggcgcgcgcgtgggcgCGTCCAGCAAGGCGCG
CTACACGGACGGCAAGTTGGATTGCATCCAGATCGACGCGCACGGAAACG
TGAGCAACCGCCAGATGAGACGCGCCGACATTCTGCAGGAGGCGCGTTCC
ACGTTTCCCGGCTCGCAACCGCCGCCTCACGTGGTCAACAAATGGCTCAA
CGGCGACGCGCCGCTTCCGTCGCCGGAATTGAAGCAGTTCTCGCGCTGGT
TCGAGCCGCATGCGGTGGCCAACCGCAAGACGGCGCAAAAGGCGCTGCGT
GACTACCTTCGCAACTCGCTGCAGGCGCGCGATATTCGGCAGGTGGACCC
TGCCTTCGCGGCAAAGCCGGCGTTGTGGGTGCGACACTCGGCCATTGTGG
TGTCGCTTGAGGGCTTGCGTGCCATCATTCTGTACAATAAGATGTTTCTG
TTTGACCCGGCCAACGACAAGACGCAGCAGTTGTTGTACATTGCCACGCA
GTCCATTACGGCGCGACCCGATGCGGAGAACCCCCAGCCGTTTGAATTTC
GCGCGTTGGAGGGCATCCTGATTTACCTGGCCATGGGACTGGAGATCGAG
TTTAGCGACATGAAGCCGCGCATCGAGGATTATCTGCATCAGATGCCTAA
TGAGCTCACCACAAAAATGCTCGAGGAGCTTCGACTGAAGAAACAGCAAC
TGAATCAATTCCACTCGCGAGCAAACAGCGTTCGCAGTGTGTTGGAGAAC
CTGTTGGACGAAGATGACGAAATGGCCAGCATGTATCTCACGGAGAAGCA
CATTTCGGAAAACTACGCCAGAAGCGCCGTGGATCACAGCGAGGTGGAAA
CGTTGCTGGAGGCGTACCTGCAGGCAATCGATCTGCATGTGAGCCATGCC
TCCCTTCTCAACGACGCTATTGAGGACACGGAGGACCTCATCATGATTCA
TCTCGACACACTGCGCAACCGGCTGTTGTCGGTGGAACTGGCCATGAGCG
TCGTGAGCATGATGTTCGGCTTTGGCGGAGTGGTGGCCGGCGTGTTTGGC
ATGAATATCAACATTCCGCTCTTCGACGCTACCGCGAGTCGCTTTTGGTT
TCTGGCGGTGGTGCTGCTCATCACGATCACCGTGGTGTGTGTGTCGTGGC
TGGCGTTGGTCATGTTGCGGCGGCGGGGGCTGTACAACTTCTACTAG

protein sequence of Gcaud2521.t1

>Gcaud2521.t1 ID=Gcaud2521.t1|Name=Gcaud2521.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=599bp
MPRAASDPQQRPRSPPEAPPPIRLPSLRATSLTVDMVRDAADAYSISVPP
APPARSPAASPRLRSSATFGVEPTPVSFSEYVASELASDQAAREPFGVSF
APAAPRADATPAPGIGAGGGGGGGGGGGGGSGGVGVGVPLAADPFDSDSE
GGGATASLVEAATDAIPRSETEPNLALASATPIGASHGTQKRPQLSHFTQ
HSSGGGGARVGASSKARYTDGKLDCIQIDAHGNVSNRQMRRADILQEARS
TFPGSQPPPHVVNKWLNGDAPLPSPELKQFSRWFEPHAVANRKTAQKALR
DYLRNSLQARDIRQVDPAFAAKPALWVRHSAIVVSLEGLRAIILYNKMFL
FDPANDKTQQLLYIATQSITARPDAENPQPFEFRALEGILIYLAMGLEIE
FSDMKPRIEDYLHQMPNELTTKMLEELRLKKQQLNQFHSRANSVRSVLEN
LLDEDDEMASMYLTEKHISENYARSAVDHSEVETLLEAYLQAIDLHVSHA
SLLNDAIEDTEDLIMIHLDTLRNRLLSVELAMSVVSMMFGFGGVVAGVFG
MNINIPLFDATASRFWFLAVVLLITITVVCVSWLALVMLRRRGLYNFY*

mRNA from alignment at NODE_2402_length_5794_cov_3.401894:1957..3753+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2521.t1 ID=Gcaud2521.t1|Name=Gcaud2521.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1797bp|location=Sequence derived from alignment at NODE_2402_length_5794_cov_3.401894:1957..3753+ (Gracilaria caudata M_176_S67 male)
ATGCCGCGCGCCGCGTCCGATCCGCAACAACGCCCGCGCTCGCCGCCCGA
GGCGCCGCCGCCCATCCGGCTGCCGTCGCTGCGCGCCACCTCCCTCACCG
TGGACATGGTGCGCGACGCCGCCGACGCGTACTCCATCTCCGTGccgccc
gcgccgcccgcgcgctcgccggccgcgtcgccgcgcctgcGATCGTCCGC
CACGTTTGGCGTGGAGCCCACGCCGGTGTCGTTCAGCGAGTACGTGGCGT
CCGAACTGGCCAGCGACCAGgcggcgcgcgagccgttcggcgtgtcgttt
gcgcccgccgcgccgcgcgcggacgccacgcccgcgcCGGGGATTGGTGC
Gggcggtggcggcggcggtggcggcggtggcggtggtgggagtgggggcg
tgggcgtgggcgtgccgcttgcggcggATCCGTTTGACTCCGACTCGGAG
GGCGGCGGCGCTACGGCCAGTTTGGTGGAGGCAGCCACCGACGCCATTCC
GCGCTCCGAGACCGAACCGAATCTTGCGCTCGCGTCTGCCACGCCCATCG
GCGCGTCGCACGGCACGCAAAAACGACCGCAGCTGTCGCACTTCACGCAG
CACAgcagcggcggcggcggcgcgcgcgtgggcgCGTCCAGCAAGGCGCG
CTACACGGACGGCAAGTTGGATTGCATCCAGATCGACGCGCACGGAAACG
TGAGCAACCGCCAGATGAGACGCGCCGACATTCTGCAGGAGGCGCGTTCC
ACGTTTCCCGGCTCGCAACCGCCGCCTCACGTGGTCAACAAATGGCTCAA
CGGCGACGCGCCGCTTCCGTCGCCGGAATTGAAGCAGTTCTCGCGCTGGT
TCGAGCCGCATGCGGTGGCCAACCGCAAGACGGCGCAAAAGGCGCTGCGT
GACTACCTTCGCAACTCGCTGCAGGCGCGCGATATTCGGCAGGTGGACCC
TGCCTTCGCGGCAAAGCCGGCGTTGTGGGTGCGACACTCGGCCATTGTGG
TGTCGCTTGAGGGCTTGCGTGCCATCATTCTGTACAATAAGATGTTTCTG
TTTGACCCGGCCAACGACAAGACGCAGCAGTTGTTGTACATTGCCACGCA
GTCCATTACGGCGCGACCCGATGCGGAGAACCCCCAGCCGTTTGAATTTC
GCGCGTTGGAGGGCATCCTGATTTACCTGGCCATGGGACTGGAGATCGAG
TTTAGCGACATGAAGCCGCGCATCGAGGATTATCTGCATCAGATGCCTAA
TGAGCTCACCACAAAAATGCTCGAGGAGCTTCGACTGAAGAAACAGCAAC
TGAATCAATTCCACTCGCGAGCAAACAGCGTTCGCAGTGTGTTGGAGAAC
CTGTTGGACGAAGATGACGAAATGGCCAGCATGTATCTCACGGAGAAGCA
CATTTCGGAAAACTACGCCAGAAGCGCCGTGGATCACAGCGAGGTGGAAA
CGTTGCTGGAGGCGTACCTGCAGGCAATCGATCTGCATGTGAGCCATGCC
TCCCTTCTCAACGACGCTATTGAGGACACGGAGGACCTCATCATGATTCA
TCTCGACACACTGCGCAACCGGCTGTTGTCGGTGGAACTGGCCATGAGCG
TCGTGAGCATGATGTTCGGCTTTGGCGGAGTGGTGGCCGGCGTGTTTGGC
ATGAATATCAACATTCCGCTCTTCGACGCTACCGCGAGTCGCTTTTGGTT
TCTGGCGGTGGTGCTGCTCATCACGATCACCGTGGTGTGTGTGTCGTGGC
TGGCGTTGGTCATGTTGCGGCGGCGGGGGCTGTACAACTTCTACTAG

Coding sequence (CDS) from alignment at NODE_2402_length_5794_cov_3.401894:1957..3753+

>Gcaud2521.t1 ID=Gcaud2521.t1|Name=Gcaud2521.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1797bp|location=Sequence derived from alignment at NODE_2402_length_5794_cov_3.401894:1957..3753+ (Gracilaria caudata M_176_S67 male)
ATGCCGCGCGCCGCGTCCGATCCGCAACAACGCCCGCGCTCGCCGCCCGA
GGCGCCGCCGCCCATCCGGCTGCCGTCGCTGCGCGCCACCTCCCTCACCG
TGGACATGGTGCGCGACGCCGCCGACGCGTACTCCATCTCCGTGccgccc
gcgccgcccgcgcgctcgccggccgcgtcgccgcgcctgcGATCGTCCGC
CACGTTTGGCGTGGAGCCCACGCCGGTGTCGTTCAGCGAGTACGTGGCGT
CCGAACTGGCCAGCGACCAGgcggcgcgcgagccgttcggcgtgtcgttt
gcgcccgccgcgccgcgcgcggacgccacgcccgcgcCGGGGATTGGTGC
Gggcggtggcggcggcggtggcggcggtggcggtggtgggagtgggggcg
tgggcgtgggcgtgccgcttgcggcggATCCGTTTGACTCCGACTCGGAG
GGCGGCGGCGCTACGGCCAGTTTGGTGGAGGCAGCCACCGACGCCATTCC
GCGCTCCGAGACCGAACCGAATCTTGCGCTCGCGTCTGCCACGCCCATCG
GCGCGTCGCACGGCACGCAAAAACGACCGCAGCTGTCGCACTTCACGCAG
CACAgcagcggcggcggcggcgcgcgcgtgggcgCGTCCAGCAAGGCGCG
CTACACGGACGGCAAGTTGGATTGCATCCAGATCGACGCGCACGGAAACG
TGAGCAACCGCCAGATGAGACGCGCCGACATTCTGCAGGAGGCGCGTTCC
ACGTTTCCCGGCTCGCAACCGCCGCCTCACGTGGTCAACAAATGGCTCAA
CGGCGACGCGCCGCTTCCGTCGCCGGAATTGAAGCAGTTCTCGCGCTGGT
TCGAGCCGCATGCGGTGGCCAACCGCAAGACGGCGCAAAAGGCGCTGCGT
GACTACCTTCGCAACTCGCTGCAGGCGCGCGATATTCGGCAGGTGGACCC
TGCCTTCGCGGCAAAGCCGGCGTTGTGGGTGCGACACTCGGCCATTGTGG
TGTCGCTTGAGGGCTTGCGTGCCATCATTCTGTACAATAAGATGTTTCTG
TTTGACCCGGCCAACGACAAGACGCAGCAGTTGTTGTACATTGCCACGCA
GTCCATTACGGCGCGACCCGATGCGGAGAACCCCCAGCCGTTTGAATTTC
GCGCGTTGGAGGGCATCCTGATTTACCTGGCCATGGGACTGGAGATCGAG
TTTAGCGACATGAAGCCGCGCATCGAGGATTATCTGCATCAGATGCCTAA
TGAGCTCACCACAAAAATGCTCGAGGAGCTTCGACTGAAGAAACAGCAAC
TGAATCAATTCCACTCGCGAGCAAACAGCGTTCGCAGTGTGTTGGAGAAC
CTGTTGGACGAAGATGACGAAATGGCCAGCATGTATCTCACGGAGAAGCA
CATTTCGGAAAACTACGCCAGAAGCGCCGTGGATCACAGCGAGGTGGAAA
CGTTGCTGGAGGCGTACCTGCAGGCAATCGATCTGCATGTGAGCCATGCC
TCCCTTCTCAACGACGCTATTGAGGACACGGAGGACCTCATCATGATTCA
TCTCGACACACTGCGCAACCGGCTGTTGTCGGTGGAACTGGCCATGAGCG
TCGTGAGCATGATGTTCGGCTTTGGCGGAGTGGTGGCCGGCGTGTTTGGC
ATGAATATCAACATTCCGCTCTTCGACGCTACCGCGAGTCGCTTTTGGTT
TCTGGCGGTGGTGCTGCTCATCACGATCACCGTGGTGTGTGTGTCGTGGC
TGGCGTTGGTCATGTTGCGGCGGCGGGGGCTGTACAACTTCTACTAG