Gcaud2520.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2520.t1
Unique NameGcaud2520.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2402_length_5794_cov_3.401894contigNODE_2402_length_5794_cov_3.401894:650..1594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ240CT
PFAMsDnaJ
Max annot lvl2759|Eukaryota
KEGG koko:K01537,ko:K07238,ko:K09529
KEGG TC2.A.5.5,3.A.3.2
GOsGO:0000988,GO:0000989,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006457,GO:0006458,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010556,GO:0015035,GO:0015036,GO:0016020,GO:0016032,GO:0016043,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0016989,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031326,GO:0032991,GO:0034641,GO:0034645,GO:0042026,GO:0043167,GO:0043169,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051704,GO:0055114,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0140096,GO:0140110,GO:1901360,GO:1901576,GO:1903506,GO:2001141
Evalue1.08e-25
EggNOG OGsCOG2214@1|root,KOG0719@2759|Eukaryota
EC3.6.3.8
Descriptionheat shock protein binding
COG categoryO
BRITEko00000,ko01000,ko02000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2520Gcaud2520Gracilaria caudata M_176_S67 malegeneNODE_2402_length_5794_cov_3.401894 650..1594 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2520.t1.stop1Gcaud2520.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2402_length_5794_cov_3.401894 650..652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2520.t1.CDS1Gcaud2520.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2402_length_5794_cov_3.401894 650..1594 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2520.t1.exon1Gcaud2520.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2402_length_5794_cov_3.401894 650..1594 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2520.t1.start1Gcaud2520.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2402_length_5794_cov_3.401894 1592..1594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2520.t1Gcaud2520.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2402_length_5794_cov_3.401894 650..1594 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2520.t1 ID=Gcaud2520.t1|Name=Gcaud2520.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=315bp
MAPVDRSYYDLLGVKPDATPAQLRKAFRLKALQLHPDRNSDAEQATQAFQ
HLNAIYNILSDADKRAHYDQFGPADNPHADDAAAAFDASSLAEFLARASS
RLSAEDISAYEHKYRQGDEEREDLEAFYRRFEGQVVNVLQYIPYSAEGDL
SRFVAFWDARIEAKELQSTSQYVAAREVLLQNARKYESKQNAASADGGGG
GGGVNKGGKKRAKTRKNGQSGDMEALAALIQKRALREKGRFEEWCDGIEK
RCGSEQKQKDAKQTRSSSRPSRSSRSTRSTTARGAQGTKRGAAQNRGASS
SSSRGVRKQRKASR*
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spliced messenger RNA

>Gcaud2520.t1 ID=Gcaud2520.t1|Name=Gcaud2520.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=945bp|location=Sequence derived from alignment at NODE_2402_length_5794_cov_3.401894:650..1594- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCGTGGACCGTTCGTACTACGACCTTCTGGGGGTGAAGCCCGA
CGCCACGCCCGCGCAGCTGCGCAAGGCGTTCCGTCTCAAGGCGCTGCAGC
TGCACCCCGACCGCAACAGCGACGCTGAACAGGCCACACAGGCGTTCCAG
CATCTCAACGCCATCTACAACATTCTCAGCGACGCCGACAAACGCGCGCA
CTACGATCAGTTCGGCCCAGCAGACAACCCACACGCCGACGACGCCGCCG
CCGCGTTCGACGCCTCTTCGCTGGCGGAGTTTTTGGCGCGCGCGAGCAGT
CGGTTGAGCGCAGAGGATATCAGTGCGTACGAGCACAAGTATCGGCAGGG
CGACGAGGAGCGCGAGGATCTGGAGGCGTTTTACAGGCGCTTTGAGGGGC
AGGTTGTGAACGTGTTGCAGTACATTCCGTACAGCGCGGAAGGTGATCTG
TCGCGCTTTGTGGCGTTTTGGGACGCGCGCATTGAGGCAAAAGAGCTGCA
AAGTACGTCGCAATACGTCGCGGCGCGAGAGGTGCTTTTGCAGAACGCGC
GCAAGTACGAGTCAAAGCAGAACGCTGCGAGCGCTGATGGTGGTGGTGGT
GGCGGTGGCGTCAACAAGGGCGGCAAGAAGCGCGCAAAGACGCGCAAGAA
CGGACAGAGCGGCGACATGGAAGCGCTGGCGGCGTTGATTCAGAAGAGGG
CGCTGCGCGAGAAGGGGCGCTTCGAGGAGTGGTGCGACGGCATTGAAAAG
CGCTGCGGTTCGGAACAGAAGCAAAAGGACGCGAAACAAACGCGCAGTTC
GAGCAGACCGTCCAGATCGAGCCGATCCACGCGCTCGACCACCGCACGCG
GCGCGCAAGGCACCAAACGAGGCGCTGCGCAGAACAGAGGCGCGTCGTCG
TCGTCGTCAAGAGGCGTTCGCAAGCAGCGAAAGGCCTCGCGCTGA
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protein sequence of Gcaud2520.t1

>Gcaud2520.t1 ID=Gcaud2520.t1|Name=Gcaud2520.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=315bp
MAPVDRSYYDLLGVKPDATPAQLRKAFRLKALQLHPDRNSDAEQATQAFQ
HLNAIYNILSDADKRAHYDQFGPADNPHADDAAAAFDASSLAEFLARASS
RLSAEDISAYEHKYRQGDEEREDLEAFYRRFEGQVVNVLQYIPYSAEGDL
SRFVAFWDARIEAKELQSTSQYVAAREVLLQNARKYESKQNAASADGGGG
GGGVNKGGKKRAKTRKNGQSGDMEALAALIQKRALREKGRFEEWCDGIEK
RCGSEQKQKDAKQTRSSSRPSRSSRSTRSTTARGAQGTKRGAAQNRGASS
SSSRGVRKQRKASR*
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mRNA from alignment at NODE_2402_length_5794_cov_3.401894:650..1594-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2520.t1 ID=Gcaud2520.t1|Name=Gcaud2520.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=945bp|location=Sequence derived from alignment at NODE_2402_length_5794_cov_3.401894:650..1594- (Gracilaria caudata M_176_S67 male)
ATGGCGCCCGTGGACCGTTCGTACTACGACCTTCTGGGGGTGAAGCCCGA
CGCCACGCCCGCGCAGCTGCGCAAGGCGTTCCGTCTCAAGGCGCTGCAGC
TGCACCCCGACCGCAACAGCGACGCTGAACAGGCCACACAGGCGTTCCAG
CATCTCAACGCCATCTACAACATTCTCAGCGACGCCGACAAACGCGCGCA
CTACGATCAGTTCGGCCCAGCAGACAACCCACACGCCGACGACGCCGCCG
CCGCGTTCGACGCCTCTTCGCTGGCGGAGTTTTTGGCGCGCGCGAGCAGT
CGGTTGAGCGCAGAGGATATCAGTGCGTACGAGCACAAGTATCGGCAGGG
CGACGAGGAGCGCGAGGATCTGGAGGCGTTTTACAGGCGCTTTGAGGGGC
AGGTTGTGAACGTGTTGCAGTACATTCCGTACAGCGCGGAAGGTGATCTG
TCGCGCTTTGTGGCGTTTTGGGACGCGCGCATTGAGGCAAAAGAGCTGCA
AAGTACGTCGCAATACGTCGCGGCGCGAGAGGTGCTTTTGCAGAACGCGC
GCAAGTACGAGTCAAAGCAGAACGCTGCGAGCGCTGATGGTGGTGGTGGT
GGCGGTGGCGTCAACAAGGGCGGCAAGAAGCGCGCAAAGACGCGCAAGAA
CGGACAGAGCGGCGACATGGAAGCGCTGGCGGCGTTGATTCAGAAGAGGG
CGCTGCGCGAGAAGGGGCGCTTCGAGGAGTGGTGCGACGGCATTGAAAAG
CGCTGCGGTTCGGAACAGAAGCAAAAGGACGCGAAACAAACGCGCAGTTC
GAGCAGACCGTCCAGATCGAGCCGATCCACGCGCTCGACCACCGCACGCG
GCGCGCAAGGCACCAAACGAGGCGCTGCGCAGAACAGAGGCGCGTCGTCG
TCGTCGTCAAGAGGCGTTCGCAAGCAGCGAAAGGCCTCGCGCTGA
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Coding sequence (CDS) from alignment at NODE_2402_length_5794_cov_3.401894:650..1594-

>Gcaud2520.t1 ID=Gcaud2520.t1|Name=Gcaud2520.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=945bp|location=Sequence derived from alignment at NODE_2402_length_5794_cov_3.401894:650..1594- (Gracilaria caudata M_176_S67 male)
ATGGCGCCCGTGGACCGTTCGTACTACGACCTTCTGGGGGTGAAGCCCGA
CGCCACGCCCGCGCAGCTGCGCAAGGCGTTCCGTCTCAAGGCGCTGCAGC
TGCACCCCGACCGCAACAGCGACGCTGAACAGGCCACACAGGCGTTCCAG
CATCTCAACGCCATCTACAACATTCTCAGCGACGCCGACAAACGCGCGCA
CTACGATCAGTTCGGCCCAGCAGACAACCCACACGCCGACGACGCCGCCG
CCGCGTTCGACGCCTCTTCGCTGGCGGAGTTTTTGGCGCGCGCGAGCAGT
CGGTTGAGCGCAGAGGATATCAGTGCGTACGAGCACAAGTATCGGCAGGG
CGACGAGGAGCGCGAGGATCTGGAGGCGTTTTACAGGCGCTTTGAGGGGC
AGGTTGTGAACGTGTTGCAGTACATTCCGTACAGCGCGGAAGGTGATCTG
TCGCGCTTTGTGGCGTTTTGGGACGCGCGCATTGAGGCAAAAGAGCTGCA
AAGTACGTCGCAATACGTCGCGGCGCGAGAGGTGCTTTTGCAGAACGCGC
GCAAGTACGAGTCAAAGCAGAACGCTGCGAGCGCTGATGGTGGTGGTGGT
GGCGGTGGCGTCAACAAGGGCGGCAAGAAGCGCGCAAAGACGCGCAAGAA
CGGACAGAGCGGCGACATGGAAGCGCTGGCGGCGTTGATTCAGAAGAGGG
CGCTGCGCGAGAAGGGGCGCTTCGAGGAGTGGTGCGACGGCATTGAAAAG
CGCTGCGGTTCGGAACAGAAGCAAAAGGACGCGAAACAAACGCGCAGTTC
GAGCAGACCGTCCAGATCGAGCCGATCCACGCGCTCGACCACCGCACGCG
GCGCGCAAGGCACCAAACGAGGCGCTGCGCAGAACAGAGGCGCGTCGTCG
TCGTCGTCAAGAGGCGTTCGCAAGCAGCGAAAGGCCTCGCGCTGA
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