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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2518.t1.stop1 | Gcaud2518.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1648_length_9314_cov_21.590589 5871..5873 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2518.t1.start1 | Gcaud2518.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1648_length_9314_cov_21.590589 8451..8453 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2518.t1 ID=Gcaud2518.t1|Name=Gcaud2518.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=861bp MEKATALAAARAAARTANEALQSATRGSSVTPIARALSAPAGALNVRKNP APTRDDEEERTADMRSPSRDAATAQNANATDVGRETATDDATTQTQPVTA MDGEEAAADTGSFTDSDEILPDPKTLPHTSAPDSGLHRTDHRSVIISSAG RRNTTTKSAHSGRAPDWNEDPEPQTPNESREPRSVGLTTPKGVRSKSVNA QAASSNPQGSTDADADRAARVATPTPRSEARTSQTKPILGNTPASSAEAL KEKFRAIRNVLKCQSCLSEGSLVLNGSTAKKGDLIAKCNLCTRRTTGARL RTAIEQAITQCGLREKYPVHVEAESTQQTTTERRYTGRGVTPAITDVLRS QIVEAVASQTRELTSKVLALQDVIEDLRTELEDTKADNQMLRATARQGVT GGSLDAEQAGLISELRAELRTAQKQNRELAQELRELKNGDTKCGGAATRP RHEGRAMTDFPRLEAGQRVTDHQGATTEREAAAMEAAQDGEPYRPATDAL CTGNDAQGRRADRDSAPNPHAPHERKTWAQIAAQRRPNLADLTEEMRSRI TSAKAELLAADLAPTQPRRRILPAALYFAGLKPGPISRYRRALTTAIPGW ALLSISFVGRMIGEILVHDPMAPRVIATMKALGFRHLAELDTVTDARFKD RTLSADENLLRNAHACYNRYKRAVDTPNAAARAWFQQACMVLKERYPELF TKDSRRRYDRLRDALSERRAARETAPISDATSSSSSDEESSSTESSSSPS TARMTDEEGFTVVTRRKKGGSGDLSGAAPAQKTAQEPGTESERAQPGETR GERTQLGETHEDMDTGEEAVSDGVQATAPEPKQSVATSAKPTQAEQPTRD NECKGQSPTV* back to topspliced messenger RNA >Gcaud2518.t1 ID=Gcaud2518.t1|Name=Gcaud2518.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2583bp|location=Sequence derived from alignment at NODE_1648_length_9314_cov_21.590589:5871..8453- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGAAAAGGCTACTGCACTCGCTGCAGCGCGAGCGGCAGCGCGCACGGC CAATGAGGCTCTCCAGTCGGCCACACGTGGCAGCAGCGTAACCCCGATTG CCCGTGCCTTGTCTGCCCCAGCTGGGGCACTCAACGTCCGCAAGAACCCC GCACCGACTCGTGATGACGAAGAAGAACGCACAGCTGACATGCGAAGCCC GTCAAGGGACGCAGCCACTGCGCAGAATGCGAACGCGACTGATGTTGGCC GTGAAACGGCCACGGACGACGCGACGACTCAGACACAGCCGGTCACAGCT ATGGATGGGGAAGAGGCAGCTGCAGACACTGGCAGTTTCACAGACAGTGA CGAAATCCTCCCAGATCCGAAAACTCTCCCTCACACGAGTGCTCCCGACT CTGGCTTGCACCGTACAGATCATCGTAGTGTGATTATATCCTCAGCAGGG CGCAGGAATACGACGACGAAGAGTGCACACAGCGGAAGAGCGCCTGACTG GAACGAGGATCCCGAGCCTCAAACCCCAAATGAGTCGCGAGAGCCACGAT CGGTTGGTCTGACGACCCCCAAAGGCGTGCGCAGCAAAAGCGTGAACGCT CAGGCGGCCAGCTCTAATCCCCAGGGCAGCACGGACGCAGATGCAGACAG GGCCGCTCGCGTGGCGACACCGACGCCTAGAAGTGAAGCGCGTACGTCTC AAACCAAGCCCATACTCGGGAACACGCCTGCTAGCAGCGCAGAGGCGCTC AAGGAGAAGTTTCGTGCCATTCGTAACGTTTTGAAGTGCCAGTCCTGCCT TTCAGAAGGGTCGCTGGTCCTGAACGGCAGCACTGCCAAGAAGGGGGATC TCATAGCGAAGTGCAACCTTTGCACTCGACGAACGACTGGTGCACGGCTA AGAACCGCAATAGAACAAGCAATCACGCAATGTGGCCTCCGTGAGAAATA CCCTGTGCACGTCGAGGCTGAATCAACGCAGCAGACTACCACTGAGAGGC GTTATACAGGGCGCGGGGTGACCCCTGCAATCACGGACGTACTACGCTCT CAGATCGTAGAAGCAGTTGCATCGCAGACGAGAGAGCTCACGAGCAAGGT TCTGGCGCTGCAGGACGTCATCGAGGACCTGCGCACTGAGCTGGAGGACA CCAAGGCTGACAACCAGATGTTGCGCGCCACAGCTAGACAGGGCGTGACA GGAGGCTCGCTGGACGCTGAACAGGCGGGTCTGATCTCAGAACTGCGCGC AGAACTCCGCACTGCGCAGAAACAAAACAGGGAGCTCGCTCAGGAGCTTC GCGAGCTTAAAAATGGAGATACCAAATGCGGGGGCGCTGCCACACGCCCA CGCCACGAGGGGCGCGCGATGACTGATTTCCCGCGATTAGAGGCGGGGCA ACGGGTCACCGACCACCAGGGAGCAACCACAGAGCGTGAAGCGGCTGCAA TGGAGGCTGCGCAAGATGGCGAGCCTTACAGGCCCGCAACGGATGCCCTC TGCACTGGCAATGACGCACAGGGGCGTCGGGCTGATCGAGACAGTGCGCC GAACCCTCATGCGCCTCACGAGCGCAAAACATGGGCACAGATCGCTGCAC AGCGTCGGCCGAACCTGGCAGACCTCACAGAAGAGATGCGCAGCCGCATC ACGAGCGCAAAGGCAGAGTTACTCGCCGCAGACCTAGCACCAACGCAGCC ACGACGTCGGATCCTCCCTGCTGCACTGTACTTTGCAGGCCTGAAGCCAG GCCCTATTAGTCGCTACCGAAGGGCTCTTACTACAGCGATCCCAGGCTGG GCGTTGCTATCTATCTCGTTTGTGGGAAGAATGATAGGCGAAATACTTGT GCACGACCCTATGGCACCACGAGTGATAGCTACGATGAAAGCCCTGGGCT TTAGGCACCTCGCTGAGTTGGACACGGTCACGGACGCACGCTTCAAAGAC AGGACATTGAGCGCTGACGAGAACCTGCTGCGCAACGCTCACGCCTGCTA CAATCGATACAAACGCGCAGTGGACACCCCGAACGCAGCAGCACGTGCGT GGTTTCAGCAGGCATGTATGGTGCTCAAGGAGCGCTACCCTGAGCTGTTT ACTAAGGACAGTCGCCGACGCTACGATAGACTTCGCGACGCACTCTCGGA ACGCCGTGCAGCGCGCGAAACGGCACCAATCAGTGACGCTACGAGTAGCT CGTCGTCCGACGAGGAGTCGAGCAGCACCGAGAGCTCCAGCAGCCCGAGC ACTGCCCGCATGACCGATGAGGAGGGCTTCACAGTGGTGACACGACGCAA GAAGGGTGGCTCCGGTGACCTGAGTGGTGCTGCTCCTGCGCAAAAGACCG CCCAGGAACCAGGAACGGAGAGCGAACGCGCACAACCGGGCGAGACGCGG GGCGAACGCACACAACTGGGCGAGACGCATGAGGACATGGATACCGGTGA GGAGGCGGTGTCGGACGGAGTGCAAGCTACTGCACCTGAGCCTAAACAGT CCGTCGCCACCAGTGCAAAACCGACGCAGGCCGAGCAGCCAACGCGAGAC AATGAGTGCAAGGGGCAGAGCCCGACCGTCTAG back to topprotein sequence of Gcaud2518.t1 >Gcaud2518.t1 ID=Gcaud2518.t1|Name=Gcaud2518.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=861bp
MEKATALAAARAAARTANEALQSATRGSSVTPIARALSAPAGALNVRKNP APTRDDEEERTADMRSPSRDAATAQNANATDVGRETATDDATTQTQPVTA MDGEEAAADTGSFTDSDEILPDPKTLPHTSAPDSGLHRTDHRSVIISSAG RRNTTTKSAHSGRAPDWNEDPEPQTPNESREPRSVGLTTPKGVRSKSVNA QAASSNPQGSTDADADRAARVATPTPRSEARTSQTKPILGNTPASSAEAL KEKFRAIRNVLKCQSCLSEGSLVLNGSTAKKGDLIAKCNLCTRRTTGARL RTAIEQAITQCGLREKYPVHVEAESTQQTTTERRYTGRGVTPAITDVLRS QIVEAVASQTRELTSKVLALQDVIEDLRTELEDTKADNQMLRATARQGVT GGSLDAEQAGLISELRAELRTAQKQNRELAQELRELKNGDTKCGGAATRP RHEGRAMTDFPRLEAGQRVTDHQGATTEREAAAMEAAQDGEPYRPATDAL CTGNDAQGRRADRDSAPNPHAPHERKTWAQIAAQRRPNLADLTEEMRSRI TSAKAELLAADLAPTQPRRRILPAALYFAGLKPGPISRYRRALTTAIPGW ALLSISFVGRMIGEILVHDPMAPRVIATMKALGFRHLAELDTVTDARFKD RTLSADENLLRNAHACYNRYKRAVDTPNAAARAWFQQACMVLKERYPELF TKDSRRRYDRLRDALSERRAARETAPISDATSSSSSDEESSSTESSSSPS TARMTDEEGFTVVTRRKKGGSGDLSGAAPAQKTAQEPGTESERAQPGETR GERTQLGETHEDMDTGEEAVSDGVQATAPEPKQSVATSAKPTQAEQPTRD NECKGQSPTV* back to topmRNA from alignment at NODE_1648_length_9314_cov_21.590589:5871..8453- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2518.t1 ID=Gcaud2518.t1|Name=Gcaud2518.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2583bp|location=Sequence derived from alignment at NODE_1648_length_9314_cov_21.590589:5871..8453- (Gracilaria caudata M_176_S67 male) ATGGAAAAGGCTACTGCACTCGCTGCAGCGCGAGCGGCAGCGCGCACGGC
CAATGAGGCTCTCCAGTCGGCCACACGTGGCAGCAGCGTAACCCCGATTG
CCCGTGCCTTGTCTGCCCCAGCTGGGGCACTCAACGTCCGCAAGAACCCC
GCACCGACTCGTGATGACGAAGAAGAACGCACAGCTGACATGCGAAGCCC
GTCAAGGGACGCAGCCACTGCGCAGAATGCGAACGCGACTGATGTTGGCC
GTGAAACGGCCACGGACGACGCGACGACTCAGACACAGCCGGTCACAGCT
ATGGATGGGGAAGAGGCAGCTGCAGACACTGGCAGTTTCACAGACAGTGA
CGAAATCCTCCCAGATCCGAAAACTCTCCCTCACACGAGTGCTCCCGACT
CTGGCTTGCACCGTACAGATCATCGTAGTGTGATTATATCCTCAGCAGGG
CGCAGGAATACGACGACGAAGAGTGCACACAGCGGAAGAGCGCCTGACTG
GAACGAGGATCCCGAGCCTCAAACCCCAAATGAGTCGCGAGAGCCACGAT
CGGTTGGTCTGACGACCCCCAAAGGCGTGCGCAGCAAAAGCGTGAACGCT
CAGGCGGCCAGCTCTAATCCCCAGGGCAGCACGGACGCAGATGCAGACAG
GGCCGCTCGCGTGGCGACACCGACGCCTAGAAGTGAAGCGCGTACGTCTC
AAACCAAGCCCATACTCGGGAACACGCCTGCTAGCAGCGCAGAGGCGCTC
AAGGAGAAGTTTCGTGCCATTCGTAACGTTTTGAAGTGCCAGTCCTGCCT
TTCAGAAGGGTCGCTGGTCCTGAACGGCAGCACTGCCAAGAAGGGGGATC
TCATAGCGAAGTGCAACCTTTGCACTCGACGAACGACTGGTGCACGGCTA
AGAACCGCAATAGAACAAGCAATCACGCAATGTGGCCTCCGTGAGAAATA
CCCTGTGCACGTCGAGGCTGAATCAACGCAGCAGACTACCACTGAGAGGC
GTTATACAGGGCGCGGGGTGACCCCTGCAATCACGGACGTACTACGCTCT
CAGATCGTAGAAGCAGTTGCATCGCAGACGAGAGAGCTCACGAGCAAGGT
TCTGGCGCTGCAGGACGTCATCGAGGACCTGCGCACTGAGCTGGAGGACA
CCAAGGCTGACAACCAGATGTTGCGCGCCACAGCTAGACAGGGCGTGACA
GGAGGCTCGCTGGACGCTGAACAGGCGGGTCTGATCTCAGAACTGCGCGC
AGAACTCCGCACTGCGCAGAAACAAAACAGGGAGCTCGCTCAGGAGCTTC
GCGAGCTTAAAAATGGAGATACCAAATGCGGGGGCGCTGCCACACGCCCA
CGCCACGAGGGGCGCGCGATGACTGATTTCCCGCGATTAGAGGCGGGGCA
ACGGGTCACCGACCACCAGGGAGCAACCACAGAGCGTGAAGCGGCTGCAA
TGGAGGCTGCGCAAGATGGCGAGCCTTACAGGCCCGCAACGGATGCCCTC
TGCACTGGCAATGACGCACAGGGGCGTCGGGCTGATCGAGACAGTGCGCC
GAACCCTCATGCGCCTCACGAGCGCAAAACATGGGCACAGATCGCTGCAC
AGCGTCGGCCGAACCTGGCAGACCTCACAGAAGAGATGCGCAGCCGCATC
ACGAGCGCAAAGGCAGAGTTACTCGCCGCAGACCTAGCACCAACGCAGCC
ACGACGTCGGATCCTCCCTGCTGCACTGTACTTTGCAGGCCTGAAGCCAG
GCCCTATTAGTCGCTACCGAAGGGCTCTTACTACAGCGATCCCAGGCTGG
GCGTTGCTATCTATCTCGTTTGTGGGAAGAATGATAGGCGAAATACTTGT
GCACGACCCTATGGCACCACGAGTGATAGCTACGATGAAAGCCCTGGGCT
TTAGGCACCTCGCTGAGTTGGACACGGTCACGGACGCACGCTTCAAAGAC
AGGACATTGAGCGCTGACGAGAACCTGCTGCGCAACGCTCACGCCTGCTA
CAATCGATACAAACGCGCAGTGGACACCCCGAACGCAGCAGCACGTGCGT
GGTTTCAGCAGGCATGTATGGTGCTCAAGGAGCGCTACCCTGAGCTGTTT
ACTAAGGACAGTCGCCGACGCTACGATAGACTTCGCGACGCACTCTCGGA
ACGCCGTGCAGCGCGCGAAACGGCACCAATCAGTGACGCTACGAGTAGCT
CGTCGTCCGACGAGGAGTCGAGCAGCACCGAGAGCTCCAGCAGCCCGAGC
ACTGCCCGCATGACCGATGAGGAGGGCTTCACAGTGGTGACACGACGCAA
GAAGGGTGGCTCCGGTGACCTGAGTGGTGCTGCTCCTGCGCAAAAGACCG
CCCAGGAACCAGGAACGGAGAGCGAACGCGCACAACCGGGCGAGACGCGG
GGCGAACGCACACAACTGGGCGAGACGCATGAGGACATGGATACCGGTGA
GGAGGCGGTGTCGGACGGAGTGCAAGCTACTGCACCTGAGCCTAAACAGT
CCGTCGCCACCAGTGCAAAACCGACGCAGGCCGAGCAGCCAACGCGAGAC
AATGAGTGCAAGGGGCAGAGCCCGACCGTCTAG back to topCoding sequence (CDS) from alignment at NODE_1648_length_9314_cov_21.590589:5871..8453- >Gcaud2518.t1 ID=Gcaud2518.t1|Name=Gcaud2518.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2583bp|location=Sequence derived from alignment at NODE_1648_length_9314_cov_21.590589:5871..8453- (Gracilaria caudata M_176_S67 male) ATGGAAAAGGCTACTGCACTCGCTGCAGCGCGAGCGGCAGCGCGCACGGC CAATGAGGCTCTCCAGTCGGCCACACGTGGCAGCAGCGTAACCCCGATTG CCCGTGCCTTGTCTGCCCCAGCTGGGGCACTCAACGTCCGCAAGAACCCC GCACCGACTCGTGATGACGAAGAAGAACGCACAGCTGACATGCGAAGCCC GTCAAGGGACGCAGCCACTGCGCAGAATGCGAACGCGACTGATGTTGGCC GTGAAACGGCCACGGACGACGCGACGACTCAGACACAGCCGGTCACAGCT ATGGATGGGGAAGAGGCAGCTGCAGACACTGGCAGTTTCACAGACAGTGA CGAAATCCTCCCAGATCCGAAAACTCTCCCTCACACGAGTGCTCCCGACT CTGGCTTGCACCGTACAGATCATCGTAGTGTGATTATATCCTCAGCAGGG CGCAGGAATACGACGACGAAGAGTGCACACAGCGGAAGAGCGCCTGACTG GAACGAGGATCCCGAGCCTCAAACCCCAAATGAGTCGCGAGAGCCACGAT CGGTTGGTCTGACGACCCCCAAAGGCGTGCGCAGCAAAAGCGTGAACGCT CAGGCGGCCAGCTCTAATCCCCAGGGCAGCACGGACGCAGATGCAGACAG GGCCGCTCGCGTGGCGACACCGACGCCTAGAAGTGAAGCGCGTACGTCTC AAACCAAGCCCATACTCGGGAACACGCCTGCTAGCAGCGCAGAGGCGCTC AAGGAGAAGTTTCGTGCCATTCGTAACGTTTTGAAGTGCCAGTCCTGCCT TTCAGAAGGGTCGCTGGTCCTGAACGGCAGCACTGCCAAGAAGGGGGATC TCATAGCGAAGTGCAACCTTTGCACTCGACGAACGACTGGTGCACGGCTA AGAACCGCAATAGAACAAGCAATCACGCAATGTGGCCTCCGTGAGAAATA CCCTGTGCACGTCGAGGCTGAATCAACGCAGCAGACTACCACTGAGAGGC GTTATACAGGGCGCGGGGTGACCCCTGCAATCACGGACGTACTACGCTCT CAGATCGTAGAAGCAGTTGCATCGCAGACGAGAGAGCTCACGAGCAAGGT TCTGGCGCTGCAGGACGTCATCGAGGACCTGCGCACTGAGCTGGAGGACA CCAAGGCTGACAACCAGATGTTGCGCGCCACAGCTAGACAGGGCGTGACA GGAGGCTCGCTGGACGCTGAACAGGCGGGTCTGATCTCAGAACTGCGCGC AGAACTCCGCACTGCGCAGAAACAAAACAGGGAGCTCGCTCAGGAGCTTC GCGAGCTTAAAAATGGAGATACCAAATGCGGGGGCGCTGCCACACGCCCA CGCCACGAGGGGCGCGCGATGACTGATTTCCCGCGATTAGAGGCGGGGCA ACGGGTCACCGACCACCAGGGAGCAACCACAGAGCGTGAAGCGGCTGCAA TGGAGGCTGCGCAAGATGGCGAGCCTTACAGGCCCGCAACGGATGCCCTC TGCACTGGCAATGACGCACAGGGGCGTCGGGCTGATCGAGACAGTGCGCC GAACCCTCATGCGCCTCACGAGCGCAAAACATGGGCACAGATCGCTGCAC AGCGTCGGCCGAACCTGGCAGACCTCACAGAAGAGATGCGCAGCCGCATC ACGAGCGCAAAGGCAGAGTTACTCGCCGCAGACCTAGCACCAACGCAGCC ACGACGTCGGATCCTCCCTGCTGCACTGTACTTTGCAGGCCTGAAGCCAG GCCCTATTAGTCGCTACCGAAGGGCTCTTACTACAGCGATCCCAGGCTGG GCGTTGCTATCTATCTCGTTTGTGGGAAGAATGATAGGCGAAATACTTGT GCACGACCCTATGGCACCACGAGTGATAGCTACGATGAAAGCCCTGGGCT TTAGGCACCTCGCTGAGTTGGACACGGTCACGGACGCACGCTTCAAAGAC AGGACATTGAGCGCTGACGAGAACCTGCTGCGCAACGCTCACGCCTGCTA CAATCGATACAAACGCGCAGTGGACACCCCGAACGCAGCAGCACGTGCGT GGTTTCAGCAGGCATGTATGGTGCTCAAGGAGCGCTACCCTGAGCTGTTT ACTAAGGACAGTCGCCGACGCTACGATAGACTTCGCGACGCACTCTCGGA ACGCCGTGCAGCGCGCGAAACGGCACCAATCAGTGACGCTACGAGTAGCT CGTCGTCCGACGAGGAGTCGAGCAGCACCGAGAGCTCCAGCAGCCCGAGC ACTGCCCGCATGACCGATGAGGAGGGCTTCACAGTGGTGACACGACGCAA GAAGGGTGGCTCCGGTGACCTGAGTGGTGCTGCTCCTGCGCAAAAGACCG CCCAGGAACCAGGAACGGAGAGCGAACGCGCACAACCGGGCGAGACGCGG GGCGAACGCACACAACTGGGCGAGACGCATGAGGACATGGATACCGGTGA GGAGGCGGTGTCGGACGGAGTGCAAGCTACTGCACCTGAGCCTAAACAGT CCGTCGCCACCAGTGCAAAACCGACGCAGGCCGAGCAGCCAACGCGAGAC AATGAGTGCAAGGGGCAGAGCCCGACCGTCTAG back to top
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