Gcaud2517.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2517.t1
Unique Name	Gcaud2517.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	359

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1648_length_9314_cov_21.590589	contig	NODE_1648_length_9314_cov_21.590589:3218..4294 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2517	Gcaud2517	Gracilaria caudata M_176_S67 male	gene	NODE_1648_length_9314_cov_21.590589 3218..4294 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2517.t1.CDS1	Gcaud2517.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1648_length_9314_cov_21.590589 3218..4294 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2517.t1.exon1	Gcaud2517.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1648_length_9314_cov_21.590589 3218..4294 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2517.t1.start1	Gcaud2517.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1648_length_9314_cov_21.590589 4292..4294 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2517.t1	Gcaud2517.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1648_length_9314_cov_21.590589 3218..4294 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1648_length_9314_cov_21.590589:3218..4294-
coding sequence from alignment at NODE_1648_length_9314_cov_21.590589:3218..4294-

mRNA sequence

>Gcaud2517.t1 ID=Gcaud2517.t1|Name=Gcaud2517.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=359bp
MRQSAADEGPGLPDTSDAVHTNHESSLGVRKQVLSQGQLRNTARPTERTR
DGNADEATFAGDYDDGYARPAGGIGTDTSGDGLRAGVAPRMRNSGPASEY
AGRHGLQAHTGGGGGPERSRGYLRKRSPPFPGLPTADMTRARKKRRTWTQ
SNLAHLVRADAHGSGTITTARATGGVRGVRSPVEVSSRDCGGHRAHFCTH
DLHQDDLEVVSPTGSLAQGDNEKGRKMRGSRVRSTDLRCVEHCAGTEALD
SNRARSARQVDVVGSVGENRGCEGGSGIATTSDEGGNASASAAGSSLALH
KPSVTLARRAAGTPPPRRCGKNAGRAWGYAVSGNEVEPSLKVATWNVRGA
VNTEGGRMA

spliced messenger RNA

>Gcaud2517.t1 ID=Gcaud2517.t1|Name=Gcaud2517.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at NODE_1648_length_9314_cov_21.590589:3218..4294- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCAGTCGGCTGCCGACGAGGGCCCAGGGCTGCCTGACACTAGCGA
CGCGGTGCATACTAACCACGAGAGTTCCCTGGGTGTGAGGAAACAGGTCC
TGAGTCAGGGACAACTGCGAAATACTGCGCGACCGACGGAACGCACGCGC
GACGGGAATGCCGATGAAGCGACCTTTGCTGGGGACTACGACGATGGCTA
CGCTCGCCCTGCCGGCGGTATCGGCACGGATACGAGCGGTGATGGATTGC
GCGCAGGCGTTGCTCCTCGCATGAGGAACTCTGGGCCAGCGAGCGAGTAC
GCTGGGCGTCATGGTTTACAGGCTCATACTGGCGGCGGTGGTGGTCCTGA
AAGATCTCGTGGGTACTTGCGGAAGCGCTCGCCACCGTTCCCGGGACTTC
CTACCGCTGATATGACACGGGCTCGCAAGAAGCGTCGCACGTGGACGCAG
AGCAACCTTGCTCATCTCGTACGTGCCGACGCCCACGGCTCGGGGACGAT
CACGACAGCGCGAGCTACTGGGGGAGTGCGTGGCGTGCGATCGCCCGTGG
AGGTCTCGTCACGGGACTGCGGCGGCCACAGAGCGCACTTTTGCACACAT
GACCTGCACCAAGACGACCTCGAGGTCGTGTCGCCCACTGGCAGTCTCGC
GCAGGGCGATAACGAGAAAGGCCGCAAGATGAGAGGCTCTCGCGTAAGGT
CGACAGACCTGCGGTGCGTCGAGCACTGCGCAGGTACCGAGGCCCTCGAT
AGCAACAGAGCCCGCTCGGCACGGCAAGTGGACGTTGTTGGGTCCGTGGG
GGAGAACAGAGGATGCGAAGGAGGTAGTGGAATCGCGACGACTTCGGATG
AGGGCGGAAACGCGAGCGCAAGCGCCGCAGGCTCGTCCCTGGCTCTGCAT
AAACCGAGCGTGACTCTTGCTCGGCGTGCGGCGGGCACTCCACCGCCTAG
AAGATGCGGGAAGAACGCAGGAAGGGCCTGGGGGTATGCTGTGAGTGGGA
ATGAGGTGGAACCATCTCTGAAGGTGGCGACCTGGAACGTCAGGGGTGCC
GTCAACACGGAGGGCGGTAGGATGGCT

protein sequence of Gcaud2517.t1

>Gcaud2517.t1 ID=Gcaud2517.t1|Name=Gcaud2517.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=359bp
MRQSAADEGPGLPDTSDAVHTNHESSLGVRKQVLSQGQLRNTARPTERTR
DGNADEATFAGDYDDGYARPAGGIGTDTSGDGLRAGVAPRMRNSGPASEY
AGRHGLQAHTGGGGGPERSRGYLRKRSPPFPGLPTADMTRARKKRRTWTQ
SNLAHLVRADAHGSGTITTARATGGVRGVRSPVEVSSRDCGGHRAHFCTH
DLHQDDLEVVSPTGSLAQGDNEKGRKMRGSRVRSTDLRCVEHCAGTEALD
SNRARSARQVDVVGSVGENRGCEGGSGIATTSDEGGNASASAAGSSLALH
KPSVTLARRAAGTPPPRRCGKNAGRAWGYAVSGNEVEPSLKVATWNVRGA
VNTEGGRMA

mRNA from alignment at NODE_1648_length_9314_cov_21.590589:3218..4294-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2517.t1 ID=Gcaud2517.t1|Name=Gcaud2517.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at NODE_1648_length_9314_cov_21.590589:3218..4294- (Gracilaria caudata M_176_S67 male)
ATGAGGCAGTCGGCTGCCGACGAGGGCCCAGGGCTGCCTGACACTAGCGA
CGCGGTGCATACTAACCACGAGAGTTCCCTGGGTGTGAGGAAACAGGTCC
TGAGTCAGGGACAACTGCGAAATACTGCGCGACCGACGGAACGCACGCGC
GACGGGAATGCCGATGAAGCGACCTTTGCTGGGGACTACGACGATGGCTA
CGCTCGCCCTGCCGGCGGTATCGGCACGGATACGAGCGGTGATGGATTGC
GCGCAGGCGTTGCTCCTCGCATGAGGAACTCTGGGCCAGCGAGCGAGTAC
GCTGGGCGTCATGGTTTACAGGCTCATACTGGCGGCGGTGGTGGTCCTGA
AAGATCTCGTGGGTACTTGCGGAAGCGCTCGCCACCGTTCCCGGGACTTC
CTACCGCTGATATGACACGGGCTCGCAAGAAGCGTCGCACGTGGACGCAG
AGCAACCTTGCTCATCTCGTACGTGCCGACGCCCACGGCTCGGGGACGAT
CACGACAGCGCGAGCTACTGGGGGAGTGCGTGGCGTGCGATCGCCCGTGG
AGGTCTCGTCACGGGACTGCGGCGGCCACAGAGCGCACTTTTGCACACAT
GACCTGCACCAAGACGACCTCGAGGTCGTGTCGCCCACTGGCAGTCTCGC
GCAGGGCGATAACGAGAAAGGCCGCAAGATGAGAGGCTCTCGCGTAAGGT
CGACAGACCTGCGGTGCGTCGAGCACTGCGCAGGTACCGAGGCCCTCGAT
AGCAACAGAGCCCGCTCGGCACGGCAAGTGGACGTTGTTGGGTCCGTGGG
GGAGAACAGAGGATGCGAAGGAGGTAGTGGAATCGCGACGACTTCGGATG
AGGGCGGAAACGCGAGCGCAAGCGCCGCAGGCTCGTCCCTGGCTCTGCAT
AAACCGAGCGTGACTCTTGCTCGGCGTGCGGCGGGCACTCCACCGCCTAG
AAGATGCGGGAAGAACGCAGGAAGGGCCTGGGGGTATGCTGTGAGTGGGA
ATGAGGTGGAACCATCTCTGAAGGTGGCGACCTGGAACGTCAGGGGTGCC
GTCAACACGGAGGGCGGTAGGATGGCT

Coding sequence (CDS) from alignment at NODE_1648_length_9314_cov_21.590589:3218..4294-

>Gcaud2517.t1 ID=Gcaud2517.t1|Name=Gcaud2517.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1077bp|location=Sequence derived from alignment at NODE_1648_length_9314_cov_21.590589:3218..4294- (Gracilaria caudata M_176_S67 male)
ATGAGGCAGTCGGCTGCCGACGAGGGCCCAGGGCTGCCTGACACTAGCGA
CGCGGTGCATACTAACCACGAGAGTTCCCTGGGTGTGAGGAAACAGGTCC
TGAGTCAGGGACAACTGCGAAATACTGCGCGACCGACGGAACGCACGCGC
GACGGGAATGCCGATGAAGCGACCTTTGCTGGGGACTACGACGATGGCTA
CGCTCGCCCTGCCGGCGGTATCGGCACGGATACGAGCGGTGATGGATTGC
GCGCAGGCGTTGCTCCTCGCATGAGGAACTCTGGGCCAGCGAGCGAGTAC
GCTGGGCGTCATGGTTTACAGGCTCATACTGGCGGCGGTGGTGGTCCTGA
AAGATCTCGTGGGTACTTGCGGAAGCGCTCGCCACCGTTCCCGGGACTTC
CTACCGCTGATATGACACGGGCTCGCAAGAAGCGTCGCACGTGGACGCAG
AGCAACCTTGCTCATCTCGTACGTGCCGACGCCCACGGCTCGGGGACGAT
CACGACAGCGCGAGCTACTGGGGGAGTGCGTGGCGTGCGATCGCCCGTGG
AGGTCTCGTCACGGGACTGCGGCGGCCACAGAGCGCACTTTTGCACACAT
GACCTGCACCAAGACGACCTCGAGGTCGTGTCGCCCACTGGCAGTCTCGC
GCAGGGCGATAACGAGAAAGGCCGCAAGATGAGAGGCTCTCGCGTAAGGT
CGACAGACCTGCGGTGCGTCGAGCACTGCGCAGGTACCGAGGCCCTCGAT
AGCAACAGAGCCCGCTCGGCACGGCAAGTGGACGTTGTTGGGTCCGTGGG
GGAGAACAGAGGATGCGAAGGAGGTAGTGGAATCGCGACGACTTCGGATG
AGGGCGGAAACGCGAGCGCAAGCGCCGCAGGCTCGTCCCTGGCTCTGCAT
AAACCGAGCGTGACTCTTGCTCGGCGTGCGGCGGGCACTCCACCGCCTAG
AAGATGCGGGAAGAACGCAGGAAGGGCCTGGGGGTATGCTGTGAGTGGGA
ATGAGGTGGAACCATCTCTGAAGGTGGCGACCTGGAACGTCAGGGGTGCC
GTCAACACGGAGGGCGGTAGGATGGCT