Gcaud2515.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2515.t1
Unique Name	Gcaud2515.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	371

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4689_length_2069_cov_5.351871	contig	NODE_4689_length_2069_cov_5.351871:848..2036 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2515	Gcaud2515	Gracilaria caudata M_176_S67 male	gene	NODE_4689_length_2069_cov_5.351871 848..2036 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2515.t1	Gcaud2515.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_4689_length_2069_cov_5.351871 848..2036 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2515.t1.stop1	Gcaud2515.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_4689_length_2069_cov_5.351871 848..850 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2515.t1.CDS1	Gcaud2515.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_4689_length_2069_cov_5.351871 848..1568 -
Gcaud2515.t1.CDS2	Gcaud2515.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_4689_length_2069_cov_5.351871 1645..2036 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2515.t1.exon1	Gcaud2515.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_4689_length_2069_cov_5.351871 848..1568 -
Gcaud2515.t1.exon2	Gcaud2515.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_4689_length_2069_cov_5.351871 1645..2036 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2515.t1.intron1	Gcaud2515.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_4689_length_2069_cov_5.351871 1569..1644 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2515.t1.start1	Gcaud2515.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_4689_length_2069_cov_5.351871 2034..2036 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_4689_length_2069_cov_5.351871:848..2036-
coding sequence from alignment at NODE_4689_length_2069_cov_5.351871:848..2036-

mRNA sequence

>Gcaud2515.t1 ID=Gcaud2515.t1|Name=Gcaud2515.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=371bp
MTYERLPTIPIGQLCDANHSALKAIFTTAPQHLQDQHSSIPRSVYKLLTI
ILAWREAAVLETRNVLFSKEDDRSQLDKMFSLSMADVDKMAEEKPNDLLA
IIEACLRADSTLHPRSFDSGDKHSLTQTILKQLADLPPPSYKRKNPLSNS
HPENVEVKRAKVSRIAGVPTGEHDSPDFWPRLGGPAPLRPSQLGVYPGKA
TVLLNTQELMGPSILHSVCQEGVNVELVVRNVRWTRQCDGRPFNAEVEAL
TLARCVHFYLCGFGTMDEAITSEAGAWLEIALRRLWALLEVQTLTSGPSP
LSREEAWQQVLPSLEVYPDIGIRVPAMRSIVNRQVSAASRARNAVRSITK
RTISQKQKTQRPQSNDQKSY*

spliced messenger RNA

>Gcaud2515.t1 ID=Gcaud2515.t1|Name=Gcaud2515.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at NODE_4689_length_2069_cov_5.351871:848..2036- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTATGAACGCCTGCCAACAATTCCCATTGGTCAGCTTTGTGATGC
AAATCACAGTGCCTTGAAAGCCATTTTTACAACAGCACCTCAGCATTTGC
AGGACCAGCACTCTTCGATTCCAAGAAGTGTGTACAAGCTTTTGACTATT
ATTTTGGCATGGAGAGAGGCCGCTGTTCTGGAAACTCGCAATGTGCTGTT
CTCAAAGGAAGATGACAGGTCTCAACTGGACAAGATGTTTTCCCTTTCGA
TGGCAGATGTAGATAAAATGGCTGAAGAGAAACCAAATGACCTCCTGGCA
ATTATTGAAGCCTGTCTTCGCGCAGACTCGACACTTCACCCTCGTTCTTT
TGACTCTGGAGATAAGCACTCGCTCACACAAACCATTCTCAAGCAGCTCG
CTGATCTCCCTCCCCCAAGTTACAAACGGAAGAATCCCCTATCAAACTCT
CATCCAGAAAACGTGGAAGTGAAGCGAGCAAAGGTCTCACGAATTGCCGG
TGTCCCGACTGGAGAGCATGATTCGCCGGATTTTTGGCCTCGGCTTGGCG
GCCCAGCGCCCCTCCGACCAAGCCAGTTAGGAGTGTATCCGGGCAAAGCT
ACCGTTCTGTTGAACACGCAAGAGCTCATGGGTCCATCCATTCTGCATTC
TGTTTGTCAAGAAGGAGTCAATGTCGAGCTTGTCGTTCGGAACGTGCGCT
GGACTCGCCAATGCGATGGCAGACCTTTCAACGCGGAAGTCGAAGCGCTT
ACTCTGGCCCGATGCGTGCACTTCTACCTATGTGGTTTCGGGACCATGGA
CGAAGCTATCACGTCAGAAGCAGGTGCATGGCTAGAAATAGCTCTCCGAA
GGCTTTGGGCGCTTTTGGAAGTTCAAACCCTCACATCGGGACCAAGTCCA
CTATCTCGAGAAGAAGCCTGGCAGCAAGTTCTTCCTTCTCTGGAAGTATA
CCCGGACATTGGGATTCGTGTGCCAGCGATGCGCTCCATTGTCAACCGTC
AGGTATCAGCAGCATCCAGAGCAAGAAATGCAGTCCGAAGCATTACGAAG
AGAACGATATCCCAGAAACAGAAGACACAAAGGCCTCAAAGCAACGACCA
AAAGTCGTACTGA

protein sequence of Gcaud2515.t1

>Gcaud2515.t1 ID=Gcaud2515.t1|Name=Gcaud2515.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=371bp
MTYERLPTIPIGQLCDANHSALKAIFTTAPQHLQDQHSSIPRSVYKLLTI
ILAWREAAVLETRNVLFSKEDDRSQLDKMFSLSMADVDKMAEEKPNDLLA
IIEACLRADSTLHPRSFDSGDKHSLTQTILKQLADLPPPSYKRKNPLSNS
HPENVEVKRAKVSRIAGVPTGEHDSPDFWPRLGGPAPLRPSQLGVYPGKA
TVLLNTQELMGPSILHSVCQEGVNVELVVRNVRWTRQCDGRPFNAEVEAL
TLARCVHFYLCGFGTMDEAITSEAGAWLEIALRRLWALLEVQTLTSGPSP
LSREEAWQQVLPSLEVYPDIGIRVPAMRSIVNRQVSAASRARNAVRSITK
RTISQKQKTQRPQSNDQKSY*

mRNA from alignment at NODE_4689_length_2069_cov_5.351871:848..2036-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2515.t1 ID=Gcaud2515.t1|Name=Gcaud2515.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1189bp|location=Sequence derived from alignment at NODE_4689_length_2069_cov_5.351871:848..2036- (Gracilaria caudata M_176_S67 male)
ATGACGTATGAACGCCTGCCAACAATTCCCATTGGTCAGCTTTGTGATGC
AAATCACAGTGCCTTGAAAGCCATTTTTACAACAGCACCTCAGCATTTGC
AGGACCAGCACTCTTCGATTCCAAGAAGTGTGTACAAGCTTTTGACTATT
ATTTTGGCATGGAGAGAGGCCGCTGTTCTGGAAACTCGCAATGTGCTGTT
CTCAAAGGAAGATGACAGGTCTCAACTGGACAAGATGTTTTCCCTTTCGA
TGGCAGATGTAGATAAAATGGCTGAAGAGAAACCAAATGACCTCCTGGCA
ATTATTGAAGCCTGTCTTCGCGCAGACTCGACACTTCACCCTCGTTCTTT
TGACTCTGGAGATAAGCACTCGCTCACACAAACCATTCTCAAGTGGCAGC
TCCTAGCGACAAGAGAAGCCTTGAAAAGAAGAGATGCCCCTGTCGTTTTG
CAACTCCGATGTTCCTAGGCAGCTCGCTGATCTCCCTCCCCCAAGTTACA
AACGGAAGAATCCCCTATCAAACTCTCATCCAGAAAACGTGGAAGTGAAG
CGAGCAAAGGTCTCACGAATTGCCGGTGTCCCGACTGGAGAGCATGATTC
GCCGGATTTTTGGCCTCGGCTTGGCGGCCCAGCGCCCCTCCGACCAAGCC
AGTTAGGAGTGTATCCGGGCAAAGCTACCGTTCTGTTGAACACGCAAGAG
CTCATGGGTCCATCCATTCTGCATTCTGTTTGTCAAGAAGGAGTCAATGT
CGAGCTTGTCGTTCGGAACGTGCGCTGGACTCGCCAATGCGATGGCAGAC
CTTTCAACGCGGAAGTCGAAGCGCTTACTCTGGCCCGATGCGTGCACTTC
TACCTATGTGGTTTCGGGACCATGGACGAAGCTATCACGTCAGAAGCAGG
TGCATGGCTAGAAATAGCTCTCCGAAGGCTTTGGGCGCTTTTGGAAGTTC
AAACCCTCACATCGGGACCAAGTCCACTATCTCGAGAAGAAGCCTGGCAG
CAAGTTCTTCCTTCTCTGGAAGTATACCCGGACATTGGGATTCGTGTGCC
AGCGATGCGCTCCATTGTCAACCGTCAGGTATCAGCAGCATCCAGAGCAA
GAAATGCAGTCCGAAGCATTACGAAGAGAACGATATCCCAGAAACAGAAG
ACACAAAGGCCTCAAAGCAACGACCAAAAGTCGTACTGA

Coding sequence (CDS) from alignment at NODE_4689_length_2069_cov_5.351871:848..2036-

>Gcaud2515.t1 ID=Gcaud2515.t1|Name=Gcaud2515.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1113bp|location=Sequence derived from alignment at NODE_4689_length_2069_cov_5.351871:848..2036- (Gracilaria caudata M_176_S67 male)
ATGACGTATGAACGCCTGCCAACAATTCCCATTGGTCAGCTTTGTGATGC
AAATCACAGTGCCTTGAAAGCCATTTTTACAACAGCACCTCAGCATTTGC
AGGACCAGCACTCTTCGATTCCAAGAAGTGTGTACAAGCTTTTGACTATT
ATTTTGGCATGGAGAGAGGCCGCTGTTCTGGAAACTCGCAATGTGCTGTT
CTCAAAGGAAGATGACAGGTCTCAACTGGACAAGATGTTTTCCCTTTCGA
TGGCAGATGTAGATAAAATGGCTGAAGAGAAACCAAATGACCTCCTGGCA
ATTATTGAAGCCTGTCTTCGCGCAGACTCGACACTTCACCCTCGTTCTTT
TGACTCTGGAGATAAGCACTCGCTCACACAAACCATTCTCAAGCAGCTCG
CTGATCTCCCTCCCCCAAGTTACAAACGGAAGAATCCCCTATCAAACTCT
CATCCAGAAAACGTGGAAGTGAAGCGAGCAAAGGTCTCACGAATTGCCGG
TGTCCCGACTGGAGAGCATGATTCGCCGGATTTTTGGCCTCGGCTTGGCG
GCCCAGCGCCCCTCCGACCAAGCCAGTTAGGAGTGTATCCGGGCAAAGCT
ACCGTTCTGTTGAACACGCAAGAGCTCATGGGTCCATCCATTCTGCATTC
TGTTTGTCAAGAAGGAGTCAATGTCGAGCTTGTCGTTCGGAACGTGCGCT
GGACTCGCCAATGCGATGGCAGACCTTTCAACGCGGAAGTCGAAGCGCTT
ACTCTGGCCCGATGCGTGCACTTCTACCTATGTGGTTTCGGGACCATGGA
CGAAGCTATCACGTCAGAAGCAGGTGCATGGCTAGAAATAGCTCTCCGAA
GGCTTTGGGCGCTTTTGGAAGTTCAAACCCTCACATCGGGACCAAGTCCA
CTATCTCGAGAAGAAGCCTGGCAGCAAGTTCTTCCTTCTCTGGAAGTATA
CCCGGACATTGGGATTCGTGTGCCAGCGATGCGCTCCATTGTCAACCGTC
AGGTATCAGCAGCATCCAGAGCAAGAAATGCAGTCCGAAGCATTACGAAG
AGAACGATATCCCAGAAACAGAAGACACAAAGGCCTCAAAGCAACGACCA
AAAGTCGTACTGA