Gcaud2514.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2514.t1
Unique Name	Gcaud2514.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	518

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5452_length_1578_cov_3.998655	contig	NODE_5452_length_1578_cov_3.998655:2..1555 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2514	Gcaud2514	Gracilaria caudata M_176_S67 male	gene	NODE_5452_length_1578_cov_3.998655 2..1555 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2514.t1.CDS1	Gcaud2514.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5452_length_1578_cov_3.998655 2..1555 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2514.t1.exon1	Gcaud2514.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5452_length_1578_cov_3.998655 2..1555 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2514.t1.start1	Gcaud2514.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5452_length_1578_cov_3.998655 1553..1555 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2514.t1	Gcaud2514.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5452_length_1578_cov_3.998655 2..1555 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5452_length_1578_cov_3.998655:2..1555-
coding sequence from alignment at NODE_5452_length_1578_cov_3.998655:2..1555-

mRNA sequence

>Gcaud2514.t1 ID=Gcaud2514.t1|Name=Gcaud2514.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=518bp
MKVQLDNEDNLVFTNASGEVIWKDMFWGELYRSGVTDLTTLVGMFITRFP
VIQFSSTESGTDAATDANKFIMNQEISEYLTNELSRFKNPEVIEGVWTGS
HMFDNTLDTKSTTVNVIATGRGATALMCRRRRVTYRSGEGTTVFNMTCLG
TLNAPSGTMTETLXXXXGKTVVIQGALPSTVNVQYNESAGDAYRILASNG
NRIVSMDTLPETLVFSLTTGTEKKIVLVDDVTKFWTSKLTGGVYASRRVY
NSSYEQQLDLSMRNEPYRFSLDINVRSLWLDVDLLEKGVKVYTCKVPSRT
RGMFSDLAVAQGFSLSFLQGIKLRGETKVGKQILAMISECFKEKRYNVTG
ARSVDRIVHASQVPGGYQVEDGNALIYGDRNYWSISGGHGDNIFKMSKFY
MRVDTGTCRPNGFHIVDIDRSTSFGLTFTLHGKTYLILNNFPIEKAKPSD
EDGEPLPWGFDEEDPFVLSYLPYAHLPRVMRKVVRFNRMPFAFLFGSDDE
YKVVHDPVHYCYRTNYLS

spliced messenger RNA

>Gcaud2514.t1 ID=Gcaud2514.t1|Name=Gcaud2514.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at NODE_5452_length_1578_cov_3.998655:2..1555- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGTACAACTTGACAATGAAGACAATTTAGTGTTCACAAACGCTTC
AGGTGAAGTTATATGGAAAGACATGTTCTGGGGAGAACTCTACAGGTCTG
GAGTGACCGACCTCACCACGTTGGTCGGCATGTTCATAACTCGATTTCCG
GTCATTCAGTTCAGCAGCACAGAATCTGGCACCGACGCGGCTACAGATGC
CAACAAATTTATCATGAACCAGGAAATATCCGAGTACTTGACGAACGAAC
TCTCTCGTTTTAAGAATCCTGAGGTTATTGAAGGAGTATGGACGGGATCT
CATATGTTTGATAATACCTTGGATACCAAATCGACTACAGTGAATGTGAT
TGCTACTGGTCGGGGAGCGACGGCGTTAATGTGTAGACGTCGAAGAGTGA
CGTATCGAAGTGGTGAAGGGACTACTGTCTTCAATATGACATGCCTTGGA
ACTCTAAATGCTCCCAGCGGTACTATGACAGAAACTCTANNNNNNNNNNG
TGGAAAGACTGTGGTCATCCAAGGTGCGCTGCCGTCGACTGTGAATGTTC
AATACAATGAGAGCGCTGGAGATGCTTATCGTATCCTTGCTTCTAATGGC
AACCGCATTGTTTCGATGGACACTCTTCCGGAGACTTTGGTATTTAGCCT
TACGACAGGGACCGAGAAGAAGATTGTGTTGGTGGATGACGTGACTAAGT
TTTGGACATCCAAACTTACAGGCGGTGTGTATGCCTCCCGACGAGTGTAC
AACTCCAGCTATGAGCAGCAACTTGATTTGTCAATGCGCAACGAGCCGTA
CAGGTTTTCACTGGATATAAATGTGCGGAGCTTGTGGTTGGATGTTGACT
TACTGGAGAAGGGCGTCAAGGTTTACACATGCAAAGTTCCGTCTCGAACC
AGAGGAATGTTTAGTGATCTTGCTGTTGCTCAGGGATTCTCATTAAGCTT
TCTTCAGGGAATTAAGCTGAGAGGAGAAACAAAGGTGGGCAAGCAGATTC
TTGCGATGATTTCGGAATGCTTTAAAGAGAAGCGATACAACGTCACTGGA
GCAAGATCCGTGGATCGCATCGTGCATGCGTCGCAGGTGCCCGGTGGTTA
CCAAGTAGAAGATGGAAATGCTTTGATATACGGAGATCGGAATTACTGGA
GTATTTCCGGGGGACACGGAGATAACATTTTCAAGATGTCGAAGTTTTAT
ATGCGTGTTGACACTGGCACTTGTCGTCCAAATGGGTTTCATATTGTGGA
CATAGACAGAAGTACTTCTTTTGGCCTCACCTTTACTCTGCATGGCAAAA
CGTATTTGATACTGAACAATTTCCCGATTGAGAAGGCTAAACCTTCCGAC
GAGGATGGTGAGCCCTTGCCTTGGGGTTTCGATGAAGAAGATCCCTTCGT
GTTAAGCTATCTTCCATATGCACATTTGCCGCGTGTAATGCGGAAGGTGG
TAAGATTCAACCGAATGCCATTCGCTTTTCTTTTCGGAAGTGATGACGAG
TACAAGGTGGTTCACGACCCGGTGCACTACTGTTATCGCACGAACTATTT
GAGT

protein sequence of Gcaud2514.t1

>Gcaud2514.t1 ID=Gcaud2514.t1|Name=Gcaud2514.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=518bp
MKVQLDNEDNLVFTNASGEVIWKDMFWGELYRSGVTDLTTLVGMFITRFP
VIQFSSTESGTDAATDANKFIMNQEISEYLTNELSRFKNPEVIEGVWTGS
HMFDNTLDTKSTTVNVIATGRGATALMCRRRRVTYRSGEGTTVFNMTCLG
TLNAPSGTMTETLXXXXGKTVVIQGALPSTVNVQYNESAGDAYRILASNG
NRIVSMDTLPETLVFSLTTGTEKKIVLVDDVTKFWTSKLTGGVYASRRVY
NSSYEQQLDLSMRNEPYRFSLDINVRSLWLDVDLLEKGVKVYTCKVPSRT
RGMFSDLAVAQGFSLSFLQGIKLRGETKVGKQILAMISECFKEKRYNVTG
ARSVDRIVHASQVPGGYQVEDGNALIYGDRNYWSISGGHGDNIFKMSKFY
MRVDTGTCRPNGFHIVDIDRSTSFGLTFTLHGKTYLILNNFPIEKAKPSD
EDGEPLPWGFDEEDPFVLSYLPYAHLPRVMRKVVRFNRMPFAFLFGSDDE
YKVVHDPVHYCYRTNYLS

mRNA from alignment at NODE_5452_length_1578_cov_3.998655:2..1555-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2514.t1 ID=Gcaud2514.t1|Name=Gcaud2514.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at NODE_5452_length_1578_cov_3.998655:2..1555- (Gracilaria caudata M_176_S67 male)
ATGAAGGTACAACTTGACAATGAAGACAATTTAGTGTTCACAAACGCTTC
AGGTGAAGTTATATGGAAAGACATGTTCTGGGGAGAACTCTACAGGTCTG
GAGTGACCGACCTCACCACGTTGGTCGGCATGTTCATAACTCGATTTCCG
GTCATTCAGTTCAGCAGCACAGAATCTGGCACCGACGCGGCTACAGATGC
CAACAAATTTATCATGAACCAGGAAATATCCGAGTACTTGACGAACGAAC
TCTCTCGTTTTAAGAATCCTGAGGTTATTGAAGGAGTATGGACGGGATCT
CATATGTTTGATAATACCTTGGATACCAAATCGACTACAGTGAATGTGAT
TGCTACTGGTCGGGGAGCGACGGCGTTAATGTGTAGACGTCGAAGAGTGA
CGTATCGAAGTGGTGAAGGGACTACTGTCTTCAATATGACATGCCTTGGA
ACTCTAAATGCTCCCAGCGGTACTATGACAGAAACTCTANNNNNNNNNNG
TGGAAAGACTGTGGTCATCCAAGGTGCGCTGCCGTCGACTGTGAATGTTC
AATACAATGAGAGCGCTGGAGATGCTTATCGTATCCTTGCTTCTAATGGC
AACCGCATTGTTTCGATGGACACTCTTCCGGAGACTTTGGTATTTAGCCT
TACGACAGGGACCGAGAAGAAGATTGTGTTGGTGGATGACGTGACTAAGT
TTTGGACATCCAAACTTACAGGCGGTGTGTATGCCTCCCGACGAGTGTAC
AACTCCAGCTATGAGCAGCAACTTGATTTGTCAATGCGCAACGAGCCGTA
CAGGTTTTCACTGGATATAAATGTGCGGAGCTTGTGGTTGGATGTTGACT
TACTGGAGAAGGGCGTCAAGGTTTACACATGCAAAGTTCCGTCTCGAACC
AGAGGAATGTTTAGTGATCTTGCTGTTGCTCAGGGATTCTCATTAAGCTT
TCTTCAGGGAATTAAGCTGAGAGGAGAAACAAAGGTGGGCAAGCAGATTC
TTGCGATGATTTCGGAATGCTTTAAAGAGAAGCGATACAACGTCACTGGA
GCAAGATCCGTGGATCGCATCGTGCATGCGTCGCAGGTGCCCGGTGGTTA
CCAAGTAGAAGATGGAAATGCTTTGATATACGGAGATCGGAATTACTGGA
GTATTTCCGGGGGACACGGAGATAACATTTTCAAGATGTCGAAGTTTTAT
ATGCGTGTTGACACTGGCACTTGTCGTCCAAATGGGTTTCATATTGTGGA
CATAGACAGAAGTACTTCTTTTGGCCTCACCTTTACTCTGCATGGCAAAA
CGTATTTGATACTGAACAATTTCCCGATTGAGAAGGCTAAACCTTCCGAC
GAGGATGGTGAGCCCTTGCCTTGGGGTTTCGATGAAGAAGATCCCTTCGT
GTTAAGCTATCTTCCATATGCACATTTGCCGCGTGTAATGCGGAAGGTGG
TAAGATTCAACCGAATGCCATTCGCTTTTCTTTTCGGAAGTGATGACGAG
TACAAGGTGGTTCACGACCCGGTGCACTACTGTTATCGCACGAACTATTT
GAGT

Coding sequence (CDS) from alignment at NODE_5452_length_1578_cov_3.998655:2..1555-

>Gcaud2514.t1 ID=Gcaud2514.t1|Name=Gcaud2514.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1554bp|location=Sequence derived from alignment at NODE_5452_length_1578_cov_3.998655:2..1555- (Gracilaria caudata M_176_S67 male)
ATGAAGGTACAACTTGACAATGAAGACAATTTAGTGTTCACAAACGCTTC
AGGTGAAGTTATATGGAAAGACATGTTCTGGGGAGAACTCTACAGGTCTG
GAGTGACCGACCTCACCACGTTGGTCGGCATGTTCATAACTCGATTTCCG
GTCATTCAGTTCAGCAGCACAGAATCTGGCACCGACGCGGCTACAGATGC
CAACAAATTTATCATGAACCAGGAAATATCCGAGTACTTGACGAACGAAC
TCTCTCGTTTTAAGAATCCTGAGGTTATTGAAGGAGTATGGACGGGATCT
CATATGTTTGATAATACCTTGGATACCAAATCGACTACAGTGAATGTGAT
TGCTACTGGTCGGGGAGCGACGGCGTTAATGTGTAGACGTCGAAGAGTGA
CGTATCGAAGTGGTGAAGGGACTACTGTCTTCAATATGACATGCCTTGGA
ACTCTAAATGCTCCCAGCGGTACTATGACAGAAACTCTANNNNNNNNNNG
TGGAAAGACTGTGGTCATCCAAGGTGCGCTGCCGTCGACTGTGAATGTTC
AATACAATGAGAGCGCTGGAGATGCTTATCGTATCCTTGCTTCTAATGGC
AACCGCATTGTTTCGATGGACACTCTTCCGGAGACTTTGGTATTTAGCCT
TACGACAGGGACCGAGAAGAAGATTGTGTTGGTGGATGACGTGACTAAGT
TTTGGACATCCAAACTTACAGGCGGTGTGTATGCCTCCCGACGAGTGTAC
AACTCCAGCTATGAGCAGCAACTTGATTTGTCAATGCGCAACGAGCCGTA
CAGGTTTTCACTGGATATAAATGTGCGGAGCTTGTGGTTGGATGTTGACT
TACTGGAGAAGGGCGTCAAGGTTTACACATGCAAAGTTCCGTCTCGAACC
AGAGGAATGTTTAGTGATCTTGCTGTTGCTCAGGGATTCTCATTAAGCTT
TCTTCAGGGAATTAAGCTGAGAGGAGAAACAAAGGTGGGCAAGCAGATTC
TTGCGATGATTTCGGAATGCTTTAAAGAGAAGCGATACAACGTCACTGGA
GCAAGATCCGTGGATCGCATCGTGCATGCGTCGCAGGTGCCCGGTGGTTA
CCAAGTAGAAGATGGAAATGCTTTGATATACGGAGATCGGAATTACTGGA
GTATTTCCGGGGGACACGGAGATAACATTTTCAAGATGTCGAAGTTTTAT
ATGCGTGTTGACACTGGCACTTGTCGTCCAAATGGGTTTCATATTGTGGA
CATAGACAGAAGTACTTCTTTTGGCCTCACCTTTACTCTGCATGGCAAAA
CGTATTTGATACTGAACAATTTCCCGATTGAGAAGGCTAAACCTTCCGAC
GAGGATGGTGAGCCCTTGCCTTGGGGTTTCGATGAAGAAGATCCCTTCGT
GTTAAGCTATCTTCCATATGCACATTTGCCGCGTGTAATGCGGAAGGTGG
TAAGATTCAACCGAATGCCATTCGCTTTTCTTTTCGGAAGTGATGACGAG
TACAAGGTGGTTCACGACCCGGTGCACTACTGTTATCGCACGAACTATTT
GAGT