Gcaud2510.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2510.t1
Unique NameGcaud2510.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_441_length_25217_cov_4.561570contigNODE_441_length_25217_cov_4.561570:16957..17760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702838.1
Preferred nameMSMO1
PFAMsFA_hydroxylase
Max annot lvl2759|Eukaryota
KEGG rclassRC01867,RC01952
KEGG koko:K07750,ko:K14424
KEGG ReactionR07485,R07490,R07509,R10057
KEGG Pathwayko00100,ko01100,ko01110,ko01130,map00100,map01100,map01110,map01130
KEGG ModuleM00101
GOsGO:0000003,GO:0000254,GO:0003006,GO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006066,GO:0006082,GO:0006629,GO:0006631,GO:0006694,GO:0006695,GO:0006696,GO:0007275,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008204,GO:0008610,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010154,GO:0012505,GO:0016020,GO:0016021,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016491,GO:0016705,GO:0016709,GO:0019752,GO:0022414,GO:0030258,GO:0031224,GO:0031967,GO:0031975,GO:0031984,GO:0032501,GO:0032502,GO:0032787,GO:0034440,GO:0042175,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046165,GO:0046872,GO:0046914,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0055114,GO:0061458,GO:0071704,GO:0071944,GO:0080065,GO:0097384,GO:0098827,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653
Evalue1.68e-111
EggNOG OGsCOG3000@1|root,KOG0873@2759|Eukaryota
EC1.14.18.9
DescriptionC-4 methylsterol oxidase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2510Gcaud2510Gracilaria caudata M_176_S67 malegeneNODE_441_length_25217_cov_4.561570 16957..17760 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2510.t1.stop1Gcaud2510.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_441_length_25217_cov_4.561570 16957..16959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2510.t1.CDS1Gcaud2510.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_441_length_25217_cov_4.561570 16957..17760 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2510.t1.exon1Gcaud2510.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_441_length_25217_cov_4.561570 16957..17760 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2510.t1.start1Gcaud2510.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_441_length_25217_cov_4.561570 17758..17760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2510.t1Gcaud2510.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_441_length_25217_cov_4.561570 16957..17760 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2510.t1 ID=Gcaud2510.t1|Name=Gcaud2510.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=268bp
MAGIPMIESMWSTVIETFSEYQLKTIVTFVIHEVCYWGSYLPFLLFEQIP
YCKRWKLQPDKPNSVPALKNCSARLLANHFFMVLPMIMFTHPVMDLMGAK
YSVEALPTPSFLAFQVFLFFVIEDFVFYWGHRALHTPFLYKKVHHIHHEH
SAPFGLAAEYAHPFEVVFLGAATLAGPMLFAPHLLTLYVYLALRCAQTVE
CHSGFDFPWSVNRWFPLYGGAHFHDHHHRIHSGNYSSTFVWVDALCGTDS
AFQAWRRKRQISKTKLK*
back to top

spliced messenger RNA

>Gcaud2510.t1 ID=Gcaud2510.t1|Name=Gcaud2510.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=804bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:16957..17760- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGCATCCCGATGATCGAGTCAATGTGGAGCACAGTCATCGAAAC
TTTTTCCGAGTATCAGCTCAAGACCATAGTCACCTTCGTCATCCACGAGG
TCTGCTACTGGGGCTCGTATCTCCCTTTCCTGCTCTTTGAACAAATCCCG
TACTGCAAGCGATGGAAGTTGCAGCCCGACAAACCGAACAGTGTGCCCGC
GCTCAAGAACTGTTCCGCTCGCCTGCTCGCGAATCATTTCTTTATGGTAC
TTCCGATGATCATGTTCACTCATCCTGTCATGGACCTAATGGGTGCTAAA
TATTCCGTTGAAGCGCTGCCCACGCCGTCGTTCCTTGCCTTTCAGGTGTT
TCTGTTCTTCGTCATCGAGGACTTCGTGTTCTACTGGGGACACCGTGCCC
TGCATACTCCTTTTCTGTACAAGAAAGTCCATCATATCCACCACGAGCAT
TCCGCGCCGTTCGGTCTAGCCGCAGAATACGCGCATCCGTTTGAAGTTGT
CTTCTTGGGTGCAGCAACTCTAGCCGGGCCGATGCTGTTTGCACCGCATT
TGCTTACGTTGTATGTTTACCTCGCGCTACGTTGCGCACAGACTGTGGAA
TGCCATTCCGGCTTTGACTTCCCCTGGAGTGTCAACCGCTGGTTCCCTTT
ATACGGTGGTGCGCACTTTCATGATCACCACCATCGAATTCATTCTGGTA
ACTACTCTAGTACGTTCGTATGGGTGGACGCGTTGTGTGGCACCGACAGC
GCCTTCCAAGCGTGGCGGAGAAAGAGACAAATAAGCAAAACAAAGCTCAA
GTAG
back to top

protein sequence of Gcaud2510.t1

>Gcaud2510.t1 ID=Gcaud2510.t1|Name=Gcaud2510.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=268bp
MAGIPMIESMWSTVIETFSEYQLKTIVTFVIHEVCYWGSYLPFLLFEQIP
YCKRWKLQPDKPNSVPALKNCSARLLANHFFMVLPMIMFTHPVMDLMGAK
YSVEALPTPSFLAFQVFLFFVIEDFVFYWGHRALHTPFLYKKVHHIHHEH
SAPFGLAAEYAHPFEVVFLGAATLAGPMLFAPHLLTLYVYLALRCAQTVE
CHSGFDFPWSVNRWFPLYGGAHFHDHHHRIHSGNYSSTFVWVDALCGTDS
AFQAWRRKRQISKTKLK*
back to top

mRNA from alignment at NODE_441_length_25217_cov_4.561570:16957..17760-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2510.t1 ID=Gcaud2510.t1|Name=Gcaud2510.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=804bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:16957..17760- (Gracilaria caudata M_176_S67 male)
ATGGCGGGCATCCCGATGATCGAGTCAATGTGGAGCACAGTCATCGAAAC
TTTTTCCGAGTATCAGCTCAAGACCATAGTCACCTTCGTCATCCACGAGG
TCTGCTACTGGGGCTCGTATCTCCCTTTCCTGCTCTTTGAACAAATCCCG
TACTGCAAGCGATGGAAGTTGCAGCCCGACAAACCGAACAGTGTGCCCGC
GCTCAAGAACTGTTCCGCTCGCCTGCTCGCGAATCATTTCTTTATGGTAC
TTCCGATGATCATGTTCACTCATCCTGTCATGGACCTAATGGGTGCTAAA
TATTCCGTTGAAGCGCTGCCCACGCCGTCGTTCCTTGCCTTTCAGGTGTT
TCTGTTCTTCGTCATCGAGGACTTCGTGTTCTACTGGGGACACCGTGCCC
TGCATACTCCTTTTCTGTACAAGAAAGTCCATCATATCCACCACGAGCAT
TCCGCGCCGTTCGGTCTAGCCGCAGAATACGCGCATCCGTTTGAAGTTGT
CTTCTTGGGTGCAGCAACTCTAGCCGGGCCGATGCTGTTTGCACCGCATT
TGCTTACGTTGTATGTTTACCTCGCGCTACGTTGCGCACAGACTGTGGAA
TGCCATTCCGGCTTTGACTTCCCCTGGAGTGTCAACCGCTGGTTCCCTTT
ATACGGTGGTGCGCACTTTCATGATCACCACCATCGAATTCATTCTGGTA
ACTACTCTAGTACGTTCGTATGGGTGGACGCGTTGTGTGGCACCGACAGC
GCCTTCCAAGCGTGGCGGAGAAAGAGACAAATAAGCAAAACAAAGCTCAA
GTAG
back to top

Coding sequence (CDS) from alignment at NODE_441_length_25217_cov_4.561570:16957..17760-

>Gcaud2510.t1 ID=Gcaud2510.t1|Name=Gcaud2510.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=804bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:16957..17760- (Gracilaria caudata M_176_S67 male)
ATGGCGGGCATCCCGATGATCGAGTCAATGTGGAGCACAGTCATCGAAAC
TTTTTCCGAGTATCAGCTCAAGACCATAGTCACCTTCGTCATCCACGAGG
TCTGCTACTGGGGCTCGTATCTCCCTTTCCTGCTCTTTGAACAAATCCCG
TACTGCAAGCGATGGAAGTTGCAGCCCGACAAACCGAACAGTGTGCCCGC
GCTCAAGAACTGTTCCGCTCGCCTGCTCGCGAATCATTTCTTTATGGTAC
TTCCGATGATCATGTTCACTCATCCTGTCATGGACCTAATGGGTGCTAAA
TATTCCGTTGAAGCGCTGCCCACGCCGTCGTTCCTTGCCTTTCAGGTGTT
TCTGTTCTTCGTCATCGAGGACTTCGTGTTCTACTGGGGACACCGTGCCC
TGCATACTCCTTTTCTGTACAAGAAAGTCCATCATATCCACCACGAGCAT
TCCGCGCCGTTCGGTCTAGCCGCAGAATACGCGCATCCGTTTGAAGTTGT
CTTCTTGGGTGCAGCAACTCTAGCCGGGCCGATGCTGTTTGCACCGCATT
TGCTTACGTTGTATGTTTACCTCGCGCTACGTTGCGCACAGACTGTGGAA
TGCCATTCCGGCTTTGACTTCCCCTGGAGTGTCAACCGCTGGTTCCCTTT
ATACGGTGGTGCGCACTTTCATGATCACCACCATCGAATTCATTCTGGTA
ACTACTCTAGTACGTTCGTATGGGTGGACGCGTTGTGTGGCACCGACAGC
GCCTTCCAAGCGTGGCGGAGAAAGAGACAAATAAGCAAAACAAAGCTCAA
GTAG
back to top