Gcaud2507.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2507.t1
Unique Name	Gcaud2507.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	495

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_441_length_25217_cov_4.561570	contig	NODE_441_length_25217_cov_4.561570:12524..14008 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2507	Gcaud2507	Gracilaria caudata M_176_S67 male	gene	NODE_441_length_25217_cov_4.561570 12524..14008 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2507.t1.start1	Gcaud2507.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_441_length_25217_cov_4.561570 12524..12526 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2507.t1.CDS1	Gcaud2507.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_441_length_25217_cov_4.561570 12524..14008 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2507.t1.exon1	Gcaud2507.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_441_length_25217_cov_4.561570 12524..14008 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2507.t1.stop1	Gcaud2507.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_441_length_25217_cov_4.561570 14006..14008 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2507.t1	Gcaud2507.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_441_length_25217_cov_4.561570 12524..14008 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_441_length_25217_cov_4.561570:12524..14008+
coding sequence from alignment at NODE_441_length_25217_cov_4.561570:12524..14008+

mRNA sequence

>Gcaud2507.t1 ID=Gcaud2507.t1|Name=Gcaud2507.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=495bp
MPLIINVRSGIISGIFEAIALLILAPIITRGTAQIYNLMATRRILTGHQV
RICDDSMSVEDIIPRAINLIRTVGSRKPTLRSNISTGIRRQCVTLLISLV
MSLGILLLSVFTDGKTVRTYEMRDLFIWNNATFVDTTPSTGLDSKACDVL
GMFGVRLACINRTDTNSFNMYAVGFYEVQNFEQGRSANGSVCLDGERTKE
RQGIFLSTNRIFSPPEDPARKEDMEGEPAQFTFVRSIDRVRAPDYCRVLV
TTETSSEEWTLSSEDPVGKTRFAVRAMRRNDSNMIIVKVGVAYHFLDIDE
VETELGLEGEDCDAISTTMFANNRFTAEITEIGVTLNLTHLELTVADMLF
WIVQSGYRHIESQAIMLRAYYAGTFDDSEQDNEPLGTFIPRRVAVATGAQ
QVTELSPLAIVGAVLTGFGTMLLLGAAVCLRPQVRLTSSTYVSKLYVNNV
CENGERGVNDWDYVEAFDGDGADVVVRPVSLRCNTAKDCESDFT*

spliced messenger RNA

>Gcaud2507.t1 ID=Gcaud2507.t1|Name=Gcaud2507.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:12524..14008+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTCATCATAAACGTGCGCAGCGGAATCATCAGCGGTATCTTCGA
AGCTATCGCTTTACTCATTCTAGCCCCGATTATAACTAGGGGCACAGCCC
AAATTTACAACCTCATGGCAACCCGTCGCATATTGACAGGCCACCAGGTA
AGAATATGCGACGACTCCATGTCCGTCGAAGATATAATACCGCGCGCAAT
CAACCTCATCCGCACCGTGGGCAGCAGAAAGCCGACTCTGCGCAGTAACA
TCAGTACAGGCATCCGCAGACAATGCGTAACGCTACTCATCTCGTTAGTG
ATGTCTCTTGGAATCCTACTTCTCAGCGTGTTCACAGACGGTAAAACTGT
CCGCACGTACGAAATGCGTGACTTGTTCATTTGGAACAACGCCACTTTTG
TTGATACAACGCCATCAACGGGCTTGGATAGCAAGGCCTGCGATGTCCTA
GGAATGTTCGGTGTGCGGCTTGCGTGCATCAACCGAACCGACACCAATTC
CTTCAACATGTATGCTGTGGGCTTCTACGAGGTACAGAACTTTGAGCAGG
GTCGCAGCGCAAACGGTTCGGTTTGTCTCGATGGCGAACGGACAAAGGAG
AGGCAAGGCATTTTTCTCAGCACCAACAGAATTTTCAGTCCCCCGGAAGA
CCCCGCGCGCAAGGAAGACATGGAAGGAGAACCTGCGCAGTTCACGTTTG
TCAGATCTATTGATCGTGTACGGGCACCGGACTACTGTCGCGTGCTTGTG
ACCACGGAAACGAGCTCGGAAGAATGGACTCTGAGTAGCGAGGATCCCGT
CGGGAAGACGAGGTTTGCGGTGAGAGCTATGAGAAGAAATGATAGCAATA
TGATTATTGTGAAGGTAGGCGTCGCCTACCACTTTCTGGACATCGATGAG
GTGGAGACCGAACTCGGACTGGAAGGAGAAGATTGTGATGCAATATCCAC
CACCATGTTTGCGAACAACCGTTTCACGGCGGAGATTACCGAAATCGGTG
TCACGCTCAACCTCACTCACCTGGAACTCACTGTGGCCGACATGCTGTTT
TGGATTGTTCAATCTGGATACAGGCACATAGAATCGCAAGCAATCATGCT
ACGCGCGTATTACGCTGGCACTTTTGATGATTCTGAGCAGGACAATGAGC
CGTTGGGTACGTTTATCCCAAGGCGGGTGGCTGTAGCTACCGGCGCACAA
CAGGTGACGGAACTGTCTCCGCTTGCCATCGTTGGGGCTGTTCTGACCGG
TTTCGGCACCATGCTGCTACTTGGCGCTGCCGTTTGTTTGCGGCCGCAGG
TACGACTTACCAGTTCCACATATGTGTCAAAGTTGTACGTCAATAACGTG
TGCGAGAATGGCGAGCGCGGTGTGAACGACTGGGACTACGTGGAGGCGTT
TGACGGGGATGGTGCGGATGTGGTTGTGCGACCCGTGTCGCTGAGGTGCA
ATACAGCTAAGGACTGTGAGAGCGATTTCACATGA

protein sequence of Gcaud2507.t1

>Gcaud2507.t1 ID=Gcaud2507.t1|Name=Gcaud2507.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=495bp
MPLIINVRSGIISGIFEAIALLILAPIITRGTAQIYNLMATRRILTGHQV
RICDDSMSVEDIIPRAINLIRTVGSRKPTLRSNISTGIRRQCVTLLISLV
MSLGILLLSVFTDGKTVRTYEMRDLFIWNNATFVDTTPSTGLDSKACDVL
GMFGVRLACINRTDTNSFNMYAVGFYEVQNFEQGRSANGSVCLDGERTKE
RQGIFLSTNRIFSPPEDPARKEDMEGEPAQFTFVRSIDRVRAPDYCRVLV
TTETSSEEWTLSSEDPVGKTRFAVRAMRRNDSNMIIVKVGVAYHFLDIDE
VETELGLEGEDCDAISTTMFANNRFTAEITEIGVTLNLTHLELTVADMLF
WIVQSGYRHIESQAIMLRAYYAGTFDDSEQDNEPLGTFIPRRVAVATGAQ
QVTELSPLAIVGAVLTGFGTMLLLGAAVCLRPQVRLTSSTYVSKLYVNNV
CENGERGVNDWDYVEAFDGDGADVVVRPVSLRCNTAKDCESDFT*

mRNA from alignment at NODE_441_length_25217_cov_4.561570:12524..14008+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2507.t1 ID=Gcaud2507.t1|Name=Gcaud2507.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:12524..14008+ (Gracilaria caudata M_176_S67 male)
ATGCCGCTCATCATAAACGTGCGCAGCGGAATCATCAGCGGTATCTTCGA
AGCTATCGCTTTACTCATTCTAGCCCCGATTATAACTAGGGGCACAGCCC
AAATTTACAACCTCATGGCAACCCGTCGCATATTGACAGGCCACCAGGTA
AGAATATGCGACGACTCCATGTCCGTCGAAGATATAATACCGCGCGCAAT
CAACCTCATCCGCACCGTGGGCAGCAGAAAGCCGACTCTGCGCAGTAACA
TCAGTACAGGCATCCGCAGACAATGCGTAACGCTACTCATCTCGTTAGTG
ATGTCTCTTGGAATCCTACTTCTCAGCGTGTTCACAGACGGTAAAACTGT
CCGCACGTACGAAATGCGTGACTTGTTCATTTGGAACAACGCCACTTTTG
TTGATACAACGCCATCAACGGGCTTGGATAGCAAGGCCTGCGATGTCCTA
GGAATGTTCGGTGTGCGGCTTGCGTGCATCAACCGAACCGACACCAATTC
CTTCAACATGTATGCTGTGGGCTTCTACGAGGTACAGAACTTTGAGCAGG
GTCGCAGCGCAAACGGTTCGGTTTGTCTCGATGGCGAACGGACAAAGGAG
AGGCAAGGCATTTTTCTCAGCACCAACAGAATTTTCAGTCCCCCGGAAGA
CCCCGCGCGCAAGGAAGACATGGAAGGAGAACCTGCGCAGTTCACGTTTG
TCAGATCTATTGATCGTGTACGGGCACCGGACTACTGTCGCGTGCTTGTG
ACCACGGAAACGAGCTCGGAAGAATGGACTCTGAGTAGCGAGGATCCCGT
CGGGAAGACGAGGTTTGCGGTGAGAGCTATGAGAAGAAATGATAGCAATA
TGATTATTGTGAAGGTAGGCGTCGCCTACCACTTTCTGGACATCGATGAG
GTGGAGACCGAACTCGGACTGGAAGGAGAAGATTGTGATGCAATATCCAC
CACCATGTTTGCGAACAACCGTTTCACGGCGGAGATTACCGAAATCGGTG
TCACGCTCAACCTCACTCACCTGGAACTCACTGTGGCCGACATGCTGTTT
TGGATTGTTCAATCTGGATACAGGCACATAGAATCGCAAGCAATCATGCT
ACGCGCGTATTACGCTGGCACTTTTGATGATTCTGAGCAGGACAATGAGC
CGTTGGGTACGTTTATCCCAAGGCGGGTGGCTGTAGCTACCGGCGCACAA
CAGGTGACGGAACTGTCTCCGCTTGCCATCGTTGGGGCTGTTCTGACCGG
TTTCGGCACCATGCTGCTACTTGGCGCTGCCGTTTGTTTGCGGCCGCAGG
TACGACTTACCAGTTCCACATATGTGTCAAAGTTGTACGTCAATAACGTG
TGCGAGAATGGCGAGCGCGGTGTGAACGACTGGGACTACGTGGAGGCGTT
TGACGGGGATGGTGCGGATGTGGTTGTGCGACCCGTGTCGCTGAGGTGCA
ATACAGCTAAGGACTGTGAGAGCGATTTCACATGA

Coding sequence (CDS) from alignment at NODE_441_length_25217_cov_4.561570:12524..14008+

>Gcaud2507.t1 ID=Gcaud2507.t1|Name=Gcaud2507.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1485bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:12524..14008+ (Gracilaria caudata M_176_S67 male)
ATGCCGCTCATCATAAACGTGCGCAGCGGAATCATCAGCGGTATCTTCGA
AGCTATCGCTTTACTCATTCTAGCCCCGATTATAACTAGGGGCACAGCCC
AAATTTACAACCTCATGGCAACCCGTCGCATATTGACAGGCCACCAGGTA
AGAATATGCGACGACTCCATGTCCGTCGAAGATATAATACCGCGCGCAAT
CAACCTCATCCGCACCGTGGGCAGCAGAAAGCCGACTCTGCGCAGTAACA
TCAGTACAGGCATCCGCAGACAATGCGTAACGCTACTCATCTCGTTAGTG
ATGTCTCTTGGAATCCTACTTCTCAGCGTGTTCACAGACGGTAAAACTGT
CCGCACGTACGAAATGCGTGACTTGTTCATTTGGAACAACGCCACTTTTG
TTGATACAACGCCATCAACGGGCTTGGATAGCAAGGCCTGCGATGTCCTA
GGAATGTTCGGTGTGCGGCTTGCGTGCATCAACCGAACCGACACCAATTC
CTTCAACATGTATGCTGTGGGCTTCTACGAGGTACAGAACTTTGAGCAGG
GTCGCAGCGCAAACGGTTCGGTTTGTCTCGATGGCGAACGGACAAAGGAG
AGGCAAGGCATTTTTCTCAGCACCAACAGAATTTTCAGTCCCCCGGAAGA
CCCCGCGCGCAAGGAAGACATGGAAGGAGAACCTGCGCAGTTCACGTTTG
TCAGATCTATTGATCGTGTACGGGCACCGGACTACTGTCGCGTGCTTGTG
ACCACGGAAACGAGCTCGGAAGAATGGACTCTGAGTAGCGAGGATCCCGT
CGGGAAGACGAGGTTTGCGGTGAGAGCTATGAGAAGAAATGATAGCAATA
TGATTATTGTGAAGGTAGGCGTCGCCTACCACTTTCTGGACATCGATGAG
GTGGAGACCGAACTCGGACTGGAAGGAGAAGATTGTGATGCAATATCCAC
CACCATGTTTGCGAACAACCGTTTCACGGCGGAGATTACCGAAATCGGTG
TCACGCTCAACCTCACTCACCTGGAACTCACTGTGGCCGACATGCTGTTT
TGGATTGTTCAATCTGGATACAGGCACATAGAATCGCAAGCAATCATGCT
ACGCGCGTATTACGCTGGCACTTTTGATGATTCTGAGCAGGACAATGAGC
CGTTGGGTACGTTTATCCCAAGGCGGGTGGCTGTAGCTACCGGCGCACAA
CAGGTGACGGAACTGTCTCCGCTTGCCATCGTTGGGGCTGTTCTGACCGG
TTTCGGCACCATGCTGCTACTTGGCGCTGCCGTTTGTTTGCGGCCGCAGG
TACGACTTACCAGTTCCACATATGTGTCAAAGTTGTACGTCAATAACGTG
TGCGAGAATGGCGAGCGCGGTGTGAACGACTGGGACTACGTGGAGGCGTT
TGACGGGGATGGTGCGGATGTGGTTGTGCGACCCGTGTCGCTGAGGTGCA
ATACAGCTAAGGACTGTGAGAGCGATTTCACATGA