Gcaud2506.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2506.t1
Unique Name	Gcaud2506.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	399

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_441_length_25217_cov_4.561570	contig	NODE_441_length_25217_cov_4.561570:10256..11523 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2506	Gcaud2506	Gracilaria caudata M_176_S67 male	gene	NODE_441_length_25217_cov_4.561570 10256..11623 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2506.t1	Gcaud2506.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_441_length_25217_cov_4.561570 10256..11523 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2506.t1.start1	Gcaud2506.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_441_length_25217_cov_4.561570 10256..10258 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2506.t1.CDS1	Gcaud2506.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_441_length_25217_cov_4.561570 10256..11437 +
Gcaud2506.t1.CDS2	Gcaud2506.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_441_length_25217_cov_4.561570 11509..11523 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2506.t1.exon1	Gcaud2506.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_441_length_25217_cov_4.561570 10256..11437 +
Gcaud2506.t1.exon2	Gcaud2506.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_441_length_25217_cov_4.561570 11509..11523 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2506.t1.intron1	Gcaud2506.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_441_length_25217_cov_4.561570 11438..11508 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2506.t1.stop1	Gcaud2506.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_441_length_25217_cov_4.561570 11521..11523 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_441_length_25217_cov_4.561570:10256..11523+
coding sequence from alignment at NODE_441_length_25217_cov_4.561570:10256..11523+

mRNA sequence

>Gcaud2506.t1 ID=Gcaud2506.t1|Name=Gcaud2506.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=399bp
MVTRRIFTGKLVRISDDSMSVEDIVPRAIKLIRTARNRKSTSRGNVSTGL
SRQCVTLMISLIMSVGILLLSVFTDGKTVPTYETRDLFIWNNATFVDSTR
STGLDSRAGDVLGMAGVRRACINRTDADSFNMYAVGFFDIQNFEQGRSAN
GSVCLDGEQTKERQGISLSTNRIFNPPADPVYKEDMEGEPAQFTFIRSID
RTGTPDYCRVLVTTEKSSEVWTLSSEYRSERTRFAVRAVRNESNVIIVKI
GVAYHFLNNDEIESELPQEFEDCDAISTTMFASNRFTAEITEIDVTLNLT
HVELTVADMLSLIVESGYGRLESQEIMLRAYYAGTRDSEEDSGEPLGTFI
RRQVAVATGGQQVTELSTLAIVGAILTAFGTVLLLGVAICFRPQCEGL*

spliced messenger RNA

>Gcaud2506.t1 ID=Gcaud2506.t1|Name=Gcaud2506.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:10256..11523+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAACCCGTCGCATATTCACAGGCAAACTGGTCAGAATATCCGACGA
CTCCATGTCCGTCGAGGACATAGTACCGCGCGCAATCAAGCTAATCCGCA
CCGCGAGGAACAGAAAATCCACTTCGCGCGGTAACGTCAGCACAGGACTC
TCCAGACAATGCGTAACACTAATGATCTCATTAATCATGTCTGTTGGAAT
TCTGCTGCTAAGCGTGTTCACAGACGGTAAAACCGTCCCAACGTACGAAA
CGCGGGATCTGTTCATCTGGAACAACGCCACGTTTGTTGATTCAACGCGA
TCTACGGGCTTGGATAGCAGAGCCGGTGATGTCTTAGGCATGGCCGGTGT
GCGACGTGCGTGCATCAACCGAACCGACGCGGATTCCTTCAACATGTATG
CTGTGGGTTTTTTCGACATACAGAACTTTGAGCAGGGTCGCAGCGCAAAC
GGTTCGGTTTGTCTCGATGGCGAGCAGACAAAGGAGAGGCAGGGCATTTC
TCTCAGTACCAATAGAATTTTCAACCCCCCGGCAGACCCCGTGTACAAGG
AAGATATGGAAGGAGAACCCGCCCAATTCACGTTTATCAGATCCATTGAT
CGTACAGGAACACCAGACTACTGTCGCGTGCTTGTGACCACGGAGAAAAG
CTCGGAAGTATGGACTCTGAGTAGTGAGTATCGCTCTGAGAGAACGAGGT
TTGCGGTGAGAGCTGTAAGAAATGAAAGCAATGTGATTATTGTCAAGATA
GGTGTCGCATATCACTTTCTGAACAACGATGAGATAGAGTCCGAGCTCCC
ACAGGAATTTGAAGATTGTGATGCAATATCCACCACCATGTTTGCGAGCA
ACCGTTTCACAGCGGAGATCACCGAAATCGATGTCACGCTCAATCTCACT
CACGTGGAACTCACTGTGGCCGACATGCTGTCTTTGATCGTTGAATCTGG
GTACGGGCGCTTAGAATCGCAAGAAATCATGCTACGCGCGTATTACGCTG
GCACGAGGGATTCTGAAGAGGATTCCGGCGAGCCGTTGGGTACGTTTATC
CGAAGGCAGGTGGCTGTGGCTACCGGTGGACAACAGGTGACGGAGCTGTC
TACACTTGCTATTGTTGGTGCAATTCTTACCGCGTTCGGCACCGTGCTTC
TTCTTGGCGTTGCCATTTGCTTTCGGCCGCAGTGTGAAGGACTGTGA

protein sequence of Gcaud2506.t1

>Gcaud2506.t1 ID=Gcaud2506.t1|Name=Gcaud2506.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=399bp
MVTRRIFTGKLVRISDDSMSVEDIVPRAIKLIRTARNRKSTSRGNVSTGL
SRQCVTLMISLIMSVGILLLSVFTDGKTVPTYETRDLFIWNNATFVDSTR
STGLDSRAGDVLGMAGVRRACINRTDADSFNMYAVGFFDIQNFEQGRSAN
GSVCLDGEQTKERQGISLSTNRIFNPPADPVYKEDMEGEPAQFTFIRSID
RTGTPDYCRVLVTTEKSSEVWTLSSEYRSERTRFAVRAVRNESNVIIVKI
GVAYHFLNNDEIESELPQEFEDCDAISTTMFASNRFTAEITEIDVTLNLT
HVELTVADMLSLIVESGYGRLESQEIMLRAYYAGTRDSEEDSGEPLGTFI
RRQVAVATGGQQVTELSTLAIVGAILTAFGTVLLLGVAICFRPQCEGL*

mRNA from alignment at NODE_441_length_25217_cov_4.561570:10256..11523+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2506.t1 ID=Gcaud2506.t1|Name=Gcaud2506.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1268bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:10256..11523+ (Gracilaria caudata M_176_S67 male)
ATGGTAACCCGTCGCATATTCACAGGCAAACTGGTCAGAATATCCGACGA
CTCCATGTCCGTCGAGGACATAGTACCGCGCGCAATCAAGCTAATCCGCA
CCGCGAGGAACAGAAAATCCACTTCGCGCGGTAACGTCAGCACAGGACTC
TCCAGACAATGCGTAACACTAATGATCTCATTAATCATGTCTGTTGGAAT
TCTGCTGCTAAGCGTGTTCACAGACGGTAAAACCGTCCCAACGTACGAAA
CGCGGGATCTGTTCATCTGGAACAACGCCACGTTTGTTGATTCAACGCGA
TCTACGGGCTTGGATAGCAGAGCCGGTGATGTCTTAGGCATGGCCGGTGT
GCGACGTGCGTGCATCAACCGAACCGACGCGGATTCCTTCAACATGTATG
CTGTGGGTTTTTTCGACATACAGAACTTTGAGCAGGGTCGCAGCGCAAAC
GGTTCGGTTTGTCTCGATGGCGAGCAGACAAAGGAGAGGCAGGGCATTTC
TCTCAGTACCAATAGAATTTTCAACCCCCCGGCAGACCCCGTGTACAAGG
AAGATATGGAAGGAGAACCCGCCCAATTCACGTTTATCAGATCCATTGAT
CGTACAGGAACACCAGACTACTGTCGCGTGCTTGTGACCACGGAGAAAAG
CTCGGAAGTATGGACTCTGAGTAGTGAGTATCGCTCTGAGAGAACGAGGT
TTGCGGTGAGAGCTGTAAGAAATGAAAGCAATGTGATTATTGTCAAGATA
GGTGTCGCATATCACTTTCTGAACAACGATGAGATAGAGTCCGAGCTCCC
ACAGGAATTTGAAGATTGTGATGCAATATCCACCACCATGTTTGCGAGCA
ACCGTTTCACAGCGGAGATCACCGAAATCGATGTCACGCTCAATCTCACT
CACGTGGAACTCACTGTGGCCGACATGCTGTCTTTGATCGTTGAATCTGG
GTACGGGCGCTTAGAATCGCAAGAAATCATGCTACGCGCGTATTACGCTG
GCACGAGGGATTCTGAAGAGGATTCCGGCGAGCCGTTGGGTACGTTTATC
CGAAGGCAGGTGGCTGTGGCTACCGGTGGACAACAGGTGACGGAGCTGTC
TACACTTGCTATTGTTGGTGCAATTCTTACCGCGTTCGGCACCGTGCTTC
TTCTTGGCGTTGCCATTTGCTTTCGGCCGCAGGTACGACTTACTAGTTCC
ACATATGTGTCACAGTTGTACGTCAATAATGCGTCTGAGAATGGCCAGAG
CAGTGTGAAGGACTGTGA

Coding sequence (CDS) from alignment at NODE_441_length_25217_cov_4.561570:10256..11523+

>Gcaud2506.t1 ID=Gcaud2506.t1|Name=Gcaud2506.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1197bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:10256..11523+ (Gracilaria caudata M_176_S67 male)
ATGGTAACCCGTCGCATATTCACAGGCAAACTGGTCAGAATATCCGACGA
CTCCATGTCCGTCGAGGACATAGTACCGCGCGCAATCAAGCTAATCCGCA
CCGCGAGGAACAGAAAATCCACTTCGCGCGGTAACGTCAGCACAGGACTC
TCCAGACAATGCGTAACACTAATGATCTCATTAATCATGTCTGTTGGAAT
TCTGCTGCTAAGCGTGTTCACAGACGGTAAAACCGTCCCAACGTACGAAA
CGCGGGATCTGTTCATCTGGAACAACGCCACGTTTGTTGATTCAACGCGA
TCTACGGGCTTGGATAGCAGAGCCGGTGATGTCTTAGGCATGGCCGGTGT
GCGACGTGCGTGCATCAACCGAACCGACGCGGATTCCTTCAACATGTATG
CTGTGGGTTTTTTCGACATACAGAACTTTGAGCAGGGTCGCAGCGCAAAC
GGTTCGGTTTGTCTCGATGGCGAGCAGACAAAGGAGAGGCAGGGCATTTC
TCTCAGTACCAATAGAATTTTCAACCCCCCGGCAGACCCCGTGTACAAGG
AAGATATGGAAGGAGAACCCGCCCAATTCACGTTTATCAGATCCATTGAT
CGTACAGGAACACCAGACTACTGTCGCGTGCTTGTGACCACGGAGAAAAG
CTCGGAAGTATGGACTCTGAGTAGTGAGTATCGCTCTGAGAGAACGAGGT
TTGCGGTGAGAGCTGTAAGAAATGAAAGCAATGTGATTATTGTCAAGATA
GGTGTCGCATATCACTTTCTGAACAACGATGAGATAGAGTCCGAGCTCCC
ACAGGAATTTGAAGATTGTGATGCAATATCCACCACCATGTTTGCGAGCA
ACCGTTTCACAGCGGAGATCACCGAAATCGATGTCACGCTCAATCTCACT
CACGTGGAACTCACTGTGGCCGACATGCTGTCTTTGATCGTTGAATCTGG
GTACGGGCGCTTAGAATCGCAAGAAATCATGCTACGCGCGTATTACGCTG
GCACGAGGGATTCTGAAGAGGATTCCGGCGAGCCGTTGGGTACGTTTATC
CGAAGGCAGGTGGCTGTGGCTACCGGTGGACAACAGGTGACGGAGCTGTC
TACACTTGCTATTGTTGGTGCAATTCTTACCGCGTTCGGCACCGTGCTTC
TTCTTGGCGTTGCCATTTGCTTTCGGCCGCAGTGTGAAGGACTGTGA