Gcaud2505.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2505.t1
Unique Name	Gcaud2505.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	565

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_441_length_25217_cov_4.561570	contig	NODE_441_length_25217_cov_4.561570:7550..9244 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2505	Gcaud2505	Gracilaria caudata M_176_S67 male	gene	NODE_441_length_25217_cov_4.561570 7550..9244 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2505.t1.start1	Gcaud2505.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_441_length_25217_cov_4.561570 7550..7552 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2505.t1.CDS1	Gcaud2505.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_441_length_25217_cov_4.561570 7550..9244 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2505.t1.exon1	Gcaud2505.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_441_length_25217_cov_4.561570 7550..9244 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2505.t1.stop1	Gcaud2505.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_441_length_25217_cov_4.561570 9242..9244 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2505.t1	Gcaud2505.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_441_length_25217_cov_4.561570 7550..9244 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_441_length_25217_cov_4.561570:7550..9244+
coding sequence from alignment at NODE_441_length_25217_cov_4.561570:7550..9244+

mRNA sequence

>Gcaud2505.t1 ID=Gcaud2505.t1|Name=Gcaud2505.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=565bp
MDPSLLLAQMPTTREHIIETVVERVATKFGNMSSTSCATSSEPREHSPNC
FPAERFLELFSRFEFGSLTLSSVVEEKGGPQTENEDTSSEDLNEIMELRA
FPFHNQVDVWQYHYDQYERLYQYLQSRGVEHWDKAEQWTEYLNDFEGALS
DDSFDRICRLGLSIMQRLLRVVSSENRTFSVGIRFIQVCMLINKLLAESG
VRASILQELNCLGPLFLIDEGENGYTRTFIGGRRYRIGKIRRELLRRNSG
APPRVSPDVVTVAISYRHFWMSGRDRKTRRHRICRLDLEAIASFIEASHA
SRLRFWVDSKLPPTNDGSFERWLTRGVRPYARYMTIICPSADASQDRFWI
ANEKYISNLSRGVFYFRGNGIYFDRGLDEFSMFANHFLHLMIGEQGLPPG
VRDEDEVKVHQWALGVLGSAEKVNAMHSGPRPDQLYSDNYTETRAIRHIE
DVVKQYGPLSLPLVPGTTWNKQNPLMKGTLGHQAHQMVNWIGLVHPEDKQ
TIFFSHVYSLRRINEPNYAVLRVRLRKAFDEPDGNAIEQKDLMAVDTDTL
REMVPVVVPASCDW*

spliced messenger RNA

>Gcaud2505.t1 ID=Gcaud2505.t1|Name=Gcaud2505.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:7550..9244+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCCAAGTCTTCTTTTGGCACAGATGCCGACCACTAGAGAACACAT
TATTGAAACTGTTGTTGAGCGCGTTGCTACCAAATTTGGCAATATGTCCT
CAACATCTTGCGCCACTTCTTCTGAACCTCGAGAGCACTCACCGAACTGT
TTTCCTGCTGAAAGGTTTCTTGAGCTTTTCAGCCGTTTTGAATTTGGTAG
CTTAACTCTTTCAAGCGTGGTTGAAGAGAAAGGAGGCCCACAAACGGAAA
ATGAAGACACCAGTTCCGAAGATTTGAACGAGATCATGGAACTGCGTGCC
TTCCCGTTTCATAACCAAGTTGATGTTTGGCAATATCATTATGACCAGTA
CGAACGACTATATCAATACCTCCAGTCTCGTGGAGTAGAGCACTGGGATA
AGGCAGAGCAATGGACCGAGTATTTGAATGACTTTGAGGGCGCTTTATCT
GACGACAGCTTTGATAGAATATGCCGACTCGGCCTTTCTATCATGCAGCG
GTTGCTGAGAGTGGTAAGTAGCGAAAACAGAACGTTTTCCGTGGGAATAC
GGTTCATTCAAGTGTGCATGCTGATAAATAAGTTACTCGCAGAGTCCGGT
GTCAGGGCTTCGATACTTCAAGAACTTAATTGCCTTGGTCCCTTGTTCTT
GATAGATGAGGGGGAAAATGGTTACACGAGAACATTCATTGGAGGAAGAA
GGTACAGGATAGGGAAGATTAGAAGGGAGCTCTTGCGCAGAAACTCCGGA
GCACCTCCAAGAGTATCGCCTGATGTCGTTACAGTGGCAATTTCGTATAG
GCATTTTTGGATGAGTGGGAGGGACAGGAAAACGAGGAGGCACAGGATCT
GTCGATTGGACTTGGAAGCAATCGCATCTTTCATTGAGGCCAGTCATGCT
TCGCGGCTGAGGTTTTGGGTTGATTCCAAGTTGCCTCCAACCAATGATGG
CTCGTTTGAAAGGTGGTTGACAAGAGGAGTAAGACCTTACGCCCGATACA
TGACGATCATTTGCCCTTCAGCCGACGCATCGCAAGACCGATTCTGGATA
GCAAATGAGAAATACATCTCCAATCTAAGCAGGGGCGTTTTTTACTTCCG
TGGGAATGGCATTTACTTCGACAGAGGGCTTGACGAATTTAGTATGTTTG
CCAATCATTTTCTGCATCTCATGATAGGAGAACAGGGACTGCCACCCGGA
GTCAGGGATGAAGACGAGGTGAAAGTACATCAGTGGGCGTTAGGAGTCCT
TGGCAGTGCCGAAAAAGTGAATGCCATGCATAGTGGACCGAGGCCGGATC
AATTGTATTCCGATAACTACACCGAAACCAGAGCCATACGTCACATCGAG
GATGTCGTTAAGCAATACGGGCCGCTAAGCTTGCCCCTTGTGCCCGGCAC
GACCTGGAACAAACAAAATCCTTTGATGAAGGGAACTCTCGGTCACCAAG
CGCATCAGATGGTCAACTGGATTGGTTTGGTACACCCAGAAGACAAACAG
ACCATCTTCTTCTCTCATGTTTACTCGTTACGAAGGATTAACGAACCTAA
TTATGCTGTCCTACGGGTGCGACTTCGAAAGGCATTCGATGAACCAGATG
GGAATGCAATAGAGCAGAAGGATCTCATGGCAGTTGATACCGATACTCTA
CGCGAAATGGTTCCCGTGGTAGTGCCTGCCTCTTGTGACTGGTAA

protein sequence of Gcaud2505.t1

>Gcaud2505.t1 ID=Gcaud2505.t1|Name=Gcaud2505.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=565bp
MDPSLLLAQMPTTREHIIETVVERVATKFGNMSSTSCATSSEPREHSPNC
FPAERFLELFSRFEFGSLTLSSVVEEKGGPQTENEDTSSEDLNEIMELRA
FPFHNQVDVWQYHYDQYERLYQYLQSRGVEHWDKAEQWTEYLNDFEGALS
DDSFDRICRLGLSIMQRLLRVVSSENRTFSVGIRFIQVCMLINKLLAESG
VRASILQELNCLGPLFLIDEGENGYTRTFIGGRRYRIGKIRRELLRRNSG
APPRVSPDVVTVAISYRHFWMSGRDRKTRRHRICRLDLEAIASFIEASHA
SRLRFWVDSKLPPTNDGSFERWLTRGVRPYARYMTIICPSADASQDRFWI
ANEKYISNLSRGVFYFRGNGIYFDRGLDEFSMFANHFLHLMIGEQGLPPG
VRDEDEVKVHQWALGVLGSAEKVNAMHSGPRPDQLYSDNYTETRAIRHIE
DVVKQYGPLSLPLVPGTTWNKQNPLMKGTLGHQAHQMVNWIGLVHPEDKQ
TIFFSHVYSLRRINEPNYAVLRVRLRKAFDEPDGNAIEQKDLMAVDTDTL
REMVPVVVPASCDW*

mRNA from alignment at NODE_441_length_25217_cov_4.561570:7550..9244+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2505.t1 ID=Gcaud2505.t1|Name=Gcaud2505.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:7550..9244+ (Gracilaria caudata M_176_S67 male)
ATGGACCCAAGTCTTCTTTTGGCACAGATGCCGACCACTAGAGAACACAT
TATTGAAACTGTTGTTGAGCGCGTTGCTACCAAATTTGGCAATATGTCCT
CAACATCTTGCGCCACTTCTTCTGAACCTCGAGAGCACTCACCGAACTGT
TTTCCTGCTGAAAGGTTTCTTGAGCTTTTCAGCCGTTTTGAATTTGGTAG
CTTAACTCTTTCAAGCGTGGTTGAAGAGAAAGGAGGCCCACAAACGGAAA
ATGAAGACACCAGTTCCGAAGATTTGAACGAGATCATGGAACTGCGTGCC
TTCCCGTTTCATAACCAAGTTGATGTTTGGCAATATCATTATGACCAGTA
CGAACGACTATATCAATACCTCCAGTCTCGTGGAGTAGAGCACTGGGATA
AGGCAGAGCAATGGACCGAGTATTTGAATGACTTTGAGGGCGCTTTATCT
GACGACAGCTTTGATAGAATATGCCGACTCGGCCTTTCTATCATGCAGCG
GTTGCTGAGAGTGGTAAGTAGCGAAAACAGAACGTTTTCCGTGGGAATAC
GGTTCATTCAAGTGTGCATGCTGATAAATAAGTTACTCGCAGAGTCCGGT
GTCAGGGCTTCGATACTTCAAGAACTTAATTGCCTTGGTCCCTTGTTCTT
GATAGATGAGGGGGAAAATGGTTACACGAGAACATTCATTGGAGGAAGAA
GGTACAGGATAGGGAAGATTAGAAGGGAGCTCTTGCGCAGAAACTCCGGA
GCACCTCCAAGAGTATCGCCTGATGTCGTTACAGTGGCAATTTCGTATAG
GCATTTTTGGATGAGTGGGAGGGACAGGAAAACGAGGAGGCACAGGATCT
GTCGATTGGACTTGGAAGCAATCGCATCTTTCATTGAGGCCAGTCATGCT
TCGCGGCTGAGGTTTTGGGTTGATTCCAAGTTGCCTCCAACCAATGATGG
CTCGTTTGAAAGGTGGTTGACAAGAGGAGTAAGACCTTACGCCCGATACA
TGACGATCATTTGCCCTTCAGCCGACGCATCGCAAGACCGATTCTGGATA
GCAAATGAGAAATACATCTCCAATCTAAGCAGGGGCGTTTTTTACTTCCG
TGGGAATGGCATTTACTTCGACAGAGGGCTTGACGAATTTAGTATGTTTG
CCAATCATTTTCTGCATCTCATGATAGGAGAACAGGGACTGCCACCCGGA
GTCAGGGATGAAGACGAGGTGAAAGTACATCAGTGGGCGTTAGGAGTCCT
TGGCAGTGCCGAAAAAGTGAATGCCATGCATAGTGGACCGAGGCCGGATC
AATTGTATTCCGATAACTACACCGAAACCAGAGCCATACGTCACATCGAG
GATGTCGTTAAGCAATACGGGCCGCTAAGCTTGCCCCTTGTGCCCGGCAC
GACCTGGAACAAACAAAATCCTTTGATGAAGGGAACTCTCGGTCACCAAG
CGCATCAGATGGTCAACTGGATTGGTTTGGTACACCCAGAAGACAAACAG
ACCATCTTCTTCTCTCATGTTTACTCGTTACGAAGGATTAACGAACCTAA
TTATGCTGTCCTACGGGTGCGACTTCGAAAGGCATTCGATGAACCAGATG
GGAATGCAATAGAGCAGAAGGATCTCATGGCAGTTGATACCGATACTCTA
CGCGAAATGGTTCCCGTGGTAGTGCCTGCCTCTTGTGACTGGTAA

Coding sequence (CDS) from alignment at NODE_441_length_25217_cov_4.561570:7550..9244+

>Gcaud2505.t1 ID=Gcaud2505.t1|Name=Gcaud2505.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1695bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:7550..9244+ (Gracilaria caudata M_176_S67 male)
ATGGACCCAAGTCTTCTTTTGGCACAGATGCCGACCACTAGAGAACACAT
TATTGAAACTGTTGTTGAGCGCGTTGCTACCAAATTTGGCAATATGTCCT
CAACATCTTGCGCCACTTCTTCTGAACCTCGAGAGCACTCACCGAACTGT
TTTCCTGCTGAAAGGTTTCTTGAGCTTTTCAGCCGTTTTGAATTTGGTAG
CTTAACTCTTTCAAGCGTGGTTGAAGAGAAAGGAGGCCCACAAACGGAAA
ATGAAGACACCAGTTCCGAAGATTTGAACGAGATCATGGAACTGCGTGCC
TTCCCGTTTCATAACCAAGTTGATGTTTGGCAATATCATTATGACCAGTA
CGAACGACTATATCAATACCTCCAGTCTCGTGGAGTAGAGCACTGGGATA
AGGCAGAGCAATGGACCGAGTATTTGAATGACTTTGAGGGCGCTTTATCT
GACGACAGCTTTGATAGAATATGCCGACTCGGCCTTTCTATCATGCAGCG
GTTGCTGAGAGTGGTAAGTAGCGAAAACAGAACGTTTTCCGTGGGAATAC
GGTTCATTCAAGTGTGCATGCTGATAAATAAGTTACTCGCAGAGTCCGGT
GTCAGGGCTTCGATACTTCAAGAACTTAATTGCCTTGGTCCCTTGTTCTT
GATAGATGAGGGGGAAAATGGTTACACGAGAACATTCATTGGAGGAAGAA
GGTACAGGATAGGGAAGATTAGAAGGGAGCTCTTGCGCAGAAACTCCGGA
GCACCTCCAAGAGTATCGCCTGATGTCGTTACAGTGGCAATTTCGTATAG
GCATTTTTGGATGAGTGGGAGGGACAGGAAAACGAGGAGGCACAGGATCT
GTCGATTGGACTTGGAAGCAATCGCATCTTTCATTGAGGCCAGTCATGCT
TCGCGGCTGAGGTTTTGGGTTGATTCCAAGTTGCCTCCAACCAATGATGG
CTCGTTTGAAAGGTGGTTGACAAGAGGAGTAAGACCTTACGCCCGATACA
TGACGATCATTTGCCCTTCAGCCGACGCATCGCAAGACCGATTCTGGATA
GCAAATGAGAAATACATCTCCAATCTAAGCAGGGGCGTTTTTTACTTCCG
TGGGAATGGCATTTACTTCGACAGAGGGCTTGACGAATTTAGTATGTTTG
CCAATCATTTTCTGCATCTCATGATAGGAGAACAGGGACTGCCACCCGGA
GTCAGGGATGAAGACGAGGTGAAAGTACATCAGTGGGCGTTAGGAGTCCT
TGGCAGTGCCGAAAAAGTGAATGCCATGCATAGTGGACCGAGGCCGGATC
AATTGTATTCCGATAACTACACCGAAACCAGAGCCATACGTCACATCGAG
GATGTCGTTAAGCAATACGGGCCGCTAAGCTTGCCCCTTGTGCCCGGCAC
GACCTGGAACAAACAAAATCCTTTGATGAAGGGAACTCTCGGTCACCAAG
CGCATCAGATGGTCAACTGGATTGGTTTGGTACACCCAGAAGACAAACAG
ACCATCTTCTTCTCTCATGTTTACTCGTTACGAAGGATTAACGAACCTAA
TTATGCTGTCCTACGGGTGCGACTTCGAAAGGCATTCGATGAACCAGATG
GGAATGCAATAGAGCAGAAGGATCTCATGGCAGTTGATACCGATACTCTA
CGCGAAATGGTTCCCGTGGTAGTGCCTGCCTCTTGTGACTGGTAA