Gcaud2504.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2504.t1
Unique NameGcaud2504.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_441_length_25217_cov_4.561570contigNODE_441_length_25217_cov_4.561570:4670..5488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERN12594
PFAMsEndonuclease_5
Max annot lvl35493|Streptophyta
KEGG koko:K21813
GOsGO:0000287,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004521,GO:0004536,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016888,GO:0016891,GO:0016893,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901363
Evalue2.54e-50
EggNOG OGsCOG1515@1|root,KOG4417@2759|Eukaryota,37NHV@33090|Viridiplantae,3GG9X@35493|Streptophyta
Descriptionendonuclease
COG categoryL
BRITEko00000,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2504Gcaud2504Gracilaria caudata M_176_S67 malegeneNODE_441_length_25217_cov_4.561570 4670..5488 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2504.t1.stop1Gcaud2504.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_441_length_25217_cov_4.561570 4670..4672 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2504.t1.CDS1Gcaud2504.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_441_length_25217_cov_4.561570 4670..5488 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2504.t1.exon1Gcaud2504.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_441_length_25217_cov_4.561570 4670..5488 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2504.t1.start1Gcaud2504.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_441_length_25217_cov_4.561570 5486..5488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2504.t1Gcaud2504.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_441_length_25217_cov_4.561570 4670..5488 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2504.t1 ID=Gcaud2504.t1|Name=Gcaud2504.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=273bp
MSSSNETALPYEALISSWVAAQEQIAHKVDCSDNNNWGDFFTPDGFKPKR
ELFVAGADVSFSTTEDLAIGTLAVVKLFSDASHQLVFSKSYKVSMAQPYV
PTFLGFREAPVISTLLKQLPEEVRTSIDCLLVDGNGLLHPRKAGLACHVG
VEHEIPCIGVSKTLLCVDGLDEKTIRERAAANGLLGIDVIGESGFLWGKA
IMTGNAQRKPIYVSIGHRVSLETAVRLVLTLCEYRVPAPVRYADLHSRAF
IRGECNDLFEAEQFSSLQPEDD*
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spliced messenger RNA

>Gcaud2504.t1 ID=Gcaud2504.t1|Name=Gcaud2504.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=819bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:4670..5488- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTCGAGCAATGAGACAGCGTTACCCTACGAAGCTCTCATTTCGTC
ATGGGTAGCAGCCCAAGAGCAAATAGCGCACAAAGTCGACTGCAGCGACA
ACAACAATTGGGGTGATTTCTTTACCCCCGACGGGTTTAAACCCAAACGC
GAACTGTTCGTAGCAGGTGCTGATGTATCGTTTTCCACCACGGAAGATCT
TGCGATTGGAACGCTTGCAGTTGTGAAGCTTTTTTCCGATGCTTCCCATC
AACTTGTGTTTTCGAAGTCATACAAGGTTTCAATGGCACAACCATATGTG
CCAACATTCTTGGGTTTTCGGGAGGCACCGGTGATATCTACATTGCTGAA
GCAGCTACCTGAGGAGGTCCGTACAAGCATCGATTGTTTGTTGGTTGATG
GAAACGGTCTTCTACATCCGCGCAAGGCCGGTTTGGCTTGTCACGTCGGA
GTGGAGCACGAGATTCCGTGTATCGGAGTATCGAAGACCTTGCTTTGCGT
TGACGGTCTTGATGAGAAAACTATTCGTGAGCGGGCGGCAGCTAACGGTT
TGCTTGGGATTGATGTGATTGGAGAGAGCGGATTCTTGTGGGGCAAAGCA
ATCATGACGGGAAACGCACAACGCAAGCCCATATACGTTTCGATCGGTCA
TAGAGTATCTCTTGAGACTGCAGTTCGGCTGGTGTTGACGCTGTGCGAGT
ATCGAGTTCCAGCTCCGGTTCGGTACGCAGATTTGCACTCTCGAGCCTTT
ATCAGGGGCGAATGTAACGACTTATTTGAAGCGGAGCAGTTCAGTTCGTT
GCAGCCGGAAGACGACTAG
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protein sequence of Gcaud2504.t1

>Gcaud2504.t1 ID=Gcaud2504.t1|Name=Gcaud2504.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=273bp
MSSSNETALPYEALISSWVAAQEQIAHKVDCSDNNNWGDFFTPDGFKPKR
ELFVAGADVSFSTTEDLAIGTLAVVKLFSDASHQLVFSKSYKVSMAQPYV
PTFLGFREAPVISTLLKQLPEEVRTSIDCLLVDGNGLLHPRKAGLACHVG
VEHEIPCIGVSKTLLCVDGLDEKTIRERAAANGLLGIDVIGESGFLWGKA
IMTGNAQRKPIYVSIGHRVSLETAVRLVLTLCEYRVPAPVRYADLHSRAF
IRGECNDLFEAEQFSSLQPEDD*
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mRNA from alignment at NODE_441_length_25217_cov_4.561570:4670..5488-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2504.t1 ID=Gcaud2504.t1|Name=Gcaud2504.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=819bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:4670..5488- (Gracilaria caudata M_176_S67 male)
ATGAGTTCGAGCAATGAGACAGCGTTACCCTACGAAGCTCTCATTTCGTC
ATGGGTAGCAGCCCAAGAGCAAATAGCGCACAAAGTCGACTGCAGCGACA
ACAACAATTGGGGTGATTTCTTTACCCCCGACGGGTTTAAACCCAAACGC
GAACTGTTCGTAGCAGGTGCTGATGTATCGTTTTCCACCACGGAAGATCT
TGCGATTGGAACGCTTGCAGTTGTGAAGCTTTTTTCCGATGCTTCCCATC
AACTTGTGTTTTCGAAGTCATACAAGGTTTCAATGGCACAACCATATGTG
CCAACATTCTTGGGTTTTCGGGAGGCACCGGTGATATCTACATTGCTGAA
GCAGCTACCTGAGGAGGTCCGTACAAGCATCGATTGTTTGTTGGTTGATG
GAAACGGTCTTCTACATCCGCGCAAGGCCGGTTTGGCTTGTCACGTCGGA
GTGGAGCACGAGATTCCGTGTATCGGAGTATCGAAGACCTTGCTTTGCGT
TGACGGTCTTGATGAGAAAACTATTCGTGAGCGGGCGGCAGCTAACGGTT
TGCTTGGGATTGATGTGATTGGAGAGAGCGGATTCTTGTGGGGCAAAGCA
ATCATGACGGGAAACGCACAACGCAAGCCCATATACGTTTCGATCGGTCA
TAGAGTATCTCTTGAGACTGCAGTTCGGCTGGTGTTGACGCTGTGCGAGT
ATCGAGTTCCAGCTCCGGTTCGGTACGCAGATTTGCACTCTCGAGCCTTT
ATCAGGGGCGAATGTAACGACTTATTTGAAGCGGAGCAGTTCAGTTCGTT
GCAGCCGGAAGACGACTAG
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Coding sequence (CDS) from alignment at NODE_441_length_25217_cov_4.561570:4670..5488-

>Gcaud2504.t1 ID=Gcaud2504.t1|Name=Gcaud2504.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=819bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:4670..5488- (Gracilaria caudata M_176_S67 male)
ATGAGTTCGAGCAATGAGACAGCGTTACCCTACGAAGCTCTCATTTCGTC
ATGGGTAGCAGCCCAAGAGCAAATAGCGCACAAAGTCGACTGCAGCGACA
ACAACAATTGGGGTGATTTCTTTACCCCCGACGGGTTTAAACCCAAACGC
GAACTGTTCGTAGCAGGTGCTGATGTATCGTTTTCCACCACGGAAGATCT
TGCGATTGGAACGCTTGCAGTTGTGAAGCTTTTTTCCGATGCTTCCCATC
AACTTGTGTTTTCGAAGTCATACAAGGTTTCAATGGCACAACCATATGTG
CCAACATTCTTGGGTTTTCGGGAGGCACCGGTGATATCTACATTGCTGAA
GCAGCTACCTGAGGAGGTCCGTACAAGCATCGATTGTTTGTTGGTTGATG
GAAACGGTCTTCTACATCCGCGCAAGGCCGGTTTGGCTTGTCACGTCGGA
GTGGAGCACGAGATTCCGTGTATCGGAGTATCGAAGACCTTGCTTTGCGT
TGACGGTCTTGATGAGAAAACTATTCGTGAGCGGGCGGCAGCTAACGGTT
TGCTTGGGATTGATGTGATTGGAGAGAGCGGATTCTTGTGGGGCAAAGCA
ATCATGACGGGAAACGCACAACGCAAGCCCATATACGTTTCGATCGGTCA
TAGAGTATCTCTTGAGACTGCAGTTCGGCTGGTGTTGACGCTGTGCGAGT
ATCGAGTTCCAGCTCCGGTTCGGTACGCAGATTTGCACTCTCGAGCCTTT
ATCAGGGGCGAATGTAACGACTTATTTGAAGCGGAGCAGTTCAGTTCGTT
GCAGCCGGAAGACGACTAG
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