Gcaud2503.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2503.t1
Unique NameGcaud2503.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length533
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_441_length_25217_cov_4.561570contigNODE_441_length_25217_cov_4.561570:2527..4125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT520CT
PFAMsCIA30,NAD_binding_10
Max annot lvl2759|Eukaryota
Evalue2.04e-131
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota
Descriptiondivinyl chlorophyllide a 8-vinyl-reductase activity
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2503Gcaud2503Gracilaria caudata M_176_S67 malegeneNODE_441_length_25217_cov_4.561570 2527..4125 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2503.t1.start1Gcaud2503.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_441_length_25217_cov_4.561570 2527..2529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2503.t1.CDS1Gcaud2503.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_441_length_25217_cov_4.561570 2527..4125 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2503.t1.exon1Gcaud2503.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_441_length_25217_cov_4.561570 2527..4125 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2503.t1.stop1Gcaud2503.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_441_length_25217_cov_4.561570 4123..4125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2503.t1Gcaud2503.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_441_length_25217_cov_4.561570 2527..4125 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2503.t1 ID=Gcaud2503.t1|Name=Gcaud2503.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=533bp
MKSSSSPWPFPRFIKTALFYSPLRRLLGGDKSDPAAELRVRARKLAKSSE
RAVYLVTGANGGSGRRVVRNLLRAENKVRALTRDRDKLIDALLMVGVDAL
EQEKQGNLDIFVSDLYNVRQELFDNVVAVASCTGTRVGPHDDPDRSKYFQ
GVKFYEPLVLDDTPENVEYRGIKNLMEAARKHFDSINKVDTLPVLEFTDM
NKVSAQWGPLDDVVMGGVSESNLGVSNAELIFSGSVSTDNRGGFTSLRTV
TFDTPMDLSAYNGIDLRVKGDGQSYKLIIRCDQNWDGICHCYTFPTVSSV
WEEVRIPFSEFNTVFRAKTLEKRRPLNPKRIFAFQVMLSKFEYDGQLNEN
FKPGPFQLCISSISAYTEQEEARCPKVVHIGSAATTRPLRTDEQFEDVPP
AVKLNEQLGLLLNWKLAGEDSVRVSGVPYCILRPTALTEEETVGLNRLVF
DQGDNITGRVGRDDIADLILKAFRTPELTNVTTEVTIAEDNEQILSNADE
RLKQLKPDEEESRSFAPFPYVPESKPSEKTAV*
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spliced messenger RNA

>Gcaud2503.t1 ID=Gcaud2503.t1|Name=Gcaud2503.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1599bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:2527..4125+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCCAGCTCCTCGCCGTGGCCGTTTCCGCGATTCATCAAAACCGC
TCTCTTCTACTCTCCGCTCCGTCGACTTCTCGGTGGCGACAAGTCCGACC
CGGCCGCCGAGCTTCGCGTGCGCGCGCGAAAGTTGGCAAAGTCCTCTGAA
CGCGCCGTGTATCTGGTCACGGGCGCCAACGGAGGCTCTGGTCGCCGCGT
GGTGCGCAACTTGCTGCGCGCGGAGAACAAGGTGAGGGCGCTCACCAGGG
ACCGTGACAAGTTGATAGACGCGCTTTTGATGGTTGGCGTGGACGCTTTG
GAACAGGAGAAGCAAGGAAACCTTGACATTTTTGTGTCCGATTTGTATAA
TGTGCGTCAGGAGCTTTTCGACAACGTTGTGGCGGTAGCGAGCTGTACTG
GTACCAGAGTGGGGCCTCATGATGATCCCGATCGCTCCAAGTATTTTCAG
GGCGTCAAGTTTTATGAGCCGCTGGTGCTTGATGACACACCGGAGAATGT
GGAGTATCGTGGTATCAAGAATCTCATGGAGGCTGCAAGAAAGCATTTTG
ACTCAATCAATAAGGTTGACACTTTACCGGTACTGGAGTTTACCGACATG
AACAAGGTCAGCGCGCAGTGGGGCCCGCTTGACGACGTCGTCATGGGCGG
CGTCAGTGAGAGCAACTTGGGGGTTAGCAACGCCGAACTCATCTTCTCCG
GCTCTGTATCAACCGACAATCGAGGCGGTTTCACCTCGCTGCGAACCGTT
ACTTTTGACACCCCCATGGATTTGAGCGCCTACAATGGCATTGATCTGCG
AGTGAAGGGCGACGGTCAGAGCTACAAGTTGATTATTCGATGCGATCAAA
ACTGGGACGGCATCTGCCACTGTTACACTTTCCCAACCGTAAGCTCAGTG
TGGGAGGAGGTTCGCATTCCCTTCAGCGAGTTCAACACCGTGTTCCGCGC
CAAAACTTTAGAAAAGCGCAGACCTCTCAACCCAAAACGCATCTTCGCCT
TTCAAGTCATGCTCAGCAAGTTTGAATATGATGGACAGCTCAATGAAAAT
TTCAAGCCCGGACCGTTCCAGCTGTGCATCAGTTCCATTAGCGCTTACAC
AGAACAGGAAGAGGCCCGATGTCCAAAGGTGGTCCACATCGGATCGGCGG
CTACTACTCGCCCTTTGCGAACTGACGAGCAGTTCGAAGATGTGCCCCCT
GCAGTCAAGCTCAATGAACAGCTTGGGTTGCTTTTGAATTGGAAACTGGC
CGGAGAAGATTCGGTGCGCGTGTCGGGTGTTCCGTACTGCATTCTTCGAC
CCACGGCGCTCACGGAGGAAGAAACAGTGGGATTGAATCGTCTTGTGTTT
GACCAAGGAGACAATATCACGGGGCGTGTTGGCAGAGATGATATTGCCGA
TTTGATTCTCAAGGCATTTAGGACGCCCGAACTCACAAATGTGACAACAG
AAGTGACCATTGCTGAGGATAATGAACAGATTTTGAGTAATGCTGATGAA
CGACTCAAGCAATTGAAGCCTGACGAAGAAGAGTCTCGATCGTTTGCTCC
GTTTCCATATGTGCCGGAAAGCAAGCCCTCTGAGAAGACCGCTGTGTAG
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protein sequence of Gcaud2503.t1

>Gcaud2503.t1 ID=Gcaud2503.t1|Name=Gcaud2503.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=533bp
MKSSSSPWPFPRFIKTALFYSPLRRLLGGDKSDPAAELRVRARKLAKSSE
RAVYLVTGANGGSGRRVVRNLLRAENKVRALTRDRDKLIDALLMVGVDAL
EQEKQGNLDIFVSDLYNVRQELFDNVVAVASCTGTRVGPHDDPDRSKYFQ
GVKFYEPLVLDDTPENVEYRGIKNLMEAARKHFDSINKVDTLPVLEFTDM
NKVSAQWGPLDDVVMGGVSESNLGVSNAELIFSGSVSTDNRGGFTSLRTV
TFDTPMDLSAYNGIDLRVKGDGQSYKLIIRCDQNWDGICHCYTFPTVSSV
WEEVRIPFSEFNTVFRAKTLEKRRPLNPKRIFAFQVMLSKFEYDGQLNEN
FKPGPFQLCISSISAYTEQEEARCPKVVHIGSAATTRPLRTDEQFEDVPP
AVKLNEQLGLLLNWKLAGEDSVRVSGVPYCILRPTALTEEETVGLNRLVF
DQGDNITGRVGRDDIADLILKAFRTPELTNVTTEVTIAEDNEQILSNADE
RLKQLKPDEEESRSFAPFPYVPESKPSEKTAV*
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mRNA from alignment at NODE_441_length_25217_cov_4.561570:2527..4125+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2503.t1 ID=Gcaud2503.t1|Name=Gcaud2503.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1599bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:2527..4125+ (Gracilaria caudata M_176_S67 male)
ATGAAGTCCAGCTCCTCGCCGTGGCCGTTTCCGCGATTCATCAAAACCGC
TCTCTTCTACTCTCCGCTCCGTCGACTTCTCGGTGGCGACAAGTCCGACC
CGGCCGCCGAGCTTCGCGTGCGCGCGCGAAAGTTGGCAAAGTCCTCTGAA
CGCGCCGTGTATCTGGTCACGGGCGCCAACGGAGGCTCTGGTCGCCGCGT
GGTGCGCAACTTGCTGCGCGCGGAGAACAAGGTGAGGGCGCTCACCAGGG
ACCGTGACAAGTTGATAGACGCGCTTTTGATGGTTGGCGTGGACGCTTTG
GAACAGGAGAAGCAAGGAAACCTTGACATTTTTGTGTCCGATTTGTATAA
TGTGCGTCAGGAGCTTTTCGACAACGTTGTGGCGGTAGCGAGCTGTACTG
GTACCAGAGTGGGGCCTCATGATGATCCCGATCGCTCCAAGTATTTTCAG
GGCGTCAAGTTTTATGAGCCGCTGGTGCTTGATGACACACCGGAGAATGT
GGAGTATCGTGGTATCAAGAATCTCATGGAGGCTGCAAGAAAGCATTTTG
ACTCAATCAATAAGGTTGACACTTTACCGGTACTGGAGTTTACCGACATG
AACAAGGTCAGCGCGCAGTGGGGCCCGCTTGACGACGTCGTCATGGGCGG
CGTCAGTGAGAGCAACTTGGGGGTTAGCAACGCCGAACTCATCTTCTCCG
GCTCTGTATCAACCGACAATCGAGGCGGTTTCACCTCGCTGCGAACCGTT
ACTTTTGACACCCCCATGGATTTGAGCGCCTACAATGGCATTGATCTGCG
AGTGAAGGGCGACGGTCAGAGCTACAAGTTGATTATTCGATGCGATCAAA
ACTGGGACGGCATCTGCCACTGTTACACTTTCCCAACCGTAAGCTCAGTG
TGGGAGGAGGTTCGCATTCCCTTCAGCGAGTTCAACACCGTGTTCCGCGC
CAAAACTTTAGAAAAGCGCAGACCTCTCAACCCAAAACGCATCTTCGCCT
TTCAAGTCATGCTCAGCAAGTTTGAATATGATGGACAGCTCAATGAAAAT
TTCAAGCCCGGACCGTTCCAGCTGTGCATCAGTTCCATTAGCGCTTACAC
AGAACAGGAAGAGGCCCGATGTCCAAAGGTGGTCCACATCGGATCGGCGG
CTACTACTCGCCCTTTGCGAACTGACGAGCAGTTCGAAGATGTGCCCCCT
GCAGTCAAGCTCAATGAACAGCTTGGGTTGCTTTTGAATTGGAAACTGGC
CGGAGAAGATTCGGTGCGCGTGTCGGGTGTTCCGTACTGCATTCTTCGAC
CCACGGCGCTCACGGAGGAAGAAACAGTGGGATTGAATCGTCTTGTGTTT
GACCAAGGAGACAATATCACGGGGCGTGTTGGCAGAGATGATATTGCCGA
TTTGATTCTCAAGGCATTTAGGACGCCCGAACTCACAAATGTGACAACAG
AAGTGACCATTGCTGAGGATAATGAACAGATTTTGAGTAATGCTGATGAA
CGACTCAAGCAATTGAAGCCTGACGAAGAAGAGTCTCGATCGTTTGCTCC
GTTTCCATATGTGCCGGAAAGCAAGCCCTCTGAGAAGACCGCTGTGTAG
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Coding sequence (CDS) from alignment at NODE_441_length_25217_cov_4.561570:2527..4125+

>Gcaud2503.t1 ID=Gcaud2503.t1|Name=Gcaud2503.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1599bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:2527..4125+ (Gracilaria caudata M_176_S67 male)
ATGAAGTCCAGCTCCTCGCCGTGGCCGTTTCCGCGATTCATCAAAACCGC
TCTCTTCTACTCTCCGCTCCGTCGACTTCTCGGTGGCGACAAGTCCGACC
CGGCCGCCGAGCTTCGCGTGCGCGCGCGAAAGTTGGCAAAGTCCTCTGAA
CGCGCCGTGTATCTGGTCACGGGCGCCAACGGAGGCTCTGGTCGCCGCGT
GGTGCGCAACTTGCTGCGCGCGGAGAACAAGGTGAGGGCGCTCACCAGGG
ACCGTGACAAGTTGATAGACGCGCTTTTGATGGTTGGCGTGGACGCTTTG
GAACAGGAGAAGCAAGGAAACCTTGACATTTTTGTGTCCGATTTGTATAA
TGTGCGTCAGGAGCTTTTCGACAACGTTGTGGCGGTAGCGAGCTGTACTG
GTACCAGAGTGGGGCCTCATGATGATCCCGATCGCTCCAAGTATTTTCAG
GGCGTCAAGTTTTATGAGCCGCTGGTGCTTGATGACACACCGGAGAATGT
GGAGTATCGTGGTATCAAGAATCTCATGGAGGCTGCAAGAAAGCATTTTG
ACTCAATCAATAAGGTTGACACTTTACCGGTACTGGAGTTTACCGACATG
AACAAGGTCAGCGCGCAGTGGGGCCCGCTTGACGACGTCGTCATGGGCGG
CGTCAGTGAGAGCAACTTGGGGGTTAGCAACGCCGAACTCATCTTCTCCG
GCTCTGTATCAACCGACAATCGAGGCGGTTTCACCTCGCTGCGAACCGTT
ACTTTTGACACCCCCATGGATTTGAGCGCCTACAATGGCATTGATCTGCG
AGTGAAGGGCGACGGTCAGAGCTACAAGTTGATTATTCGATGCGATCAAA
ACTGGGACGGCATCTGCCACTGTTACACTTTCCCAACCGTAAGCTCAGTG
TGGGAGGAGGTTCGCATTCCCTTCAGCGAGTTCAACACCGTGTTCCGCGC
CAAAACTTTAGAAAAGCGCAGACCTCTCAACCCAAAACGCATCTTCGCCT
TTCAAGTCATGCTCAGCAAGTTTGAATATGATGGACAGCTCAATGAAAAT
TTCAAGCCCGGACCGTTCCAGCTGTGCATCAGTTCCATTAGCGCTTACAC
AGAACAGGAAGAGGCCCGATGTCCAAAGGTGGTCCACATCGGATCGGCGG
CTACTACTCGCCCTTTGCGAACTGACGAGCAGTTCGAAGATGTGCCCCCT
GCAGTCAAGCTCAATGAACAGCTTGGGTTGCTTTTGAATTGGAAACTGGC
CGGAGAAGATTCGGTGCGCGTGTCGGGTGTTCCGTACTGCATTCTTCGAC
CCACGGCGCTCACGGAGGAAGAAACAGTGGGATTGAATCGTCTTGTGTTT
GACCAAGGAGACAATATCACGGGGCGTGTTGGCAGAGATGATATTGCCGA
TTTGATTCTCAAGGCATTTAGGACGCCCGAACTCACAAATGTGACAACAG
AAGTGACCATTGCTGAGGATAATGAACAGATTTTGAGTAATGCTGATGAA
CGACTCAAGCAATTGAAGCCTGACGAAGAAGAGTCTCGATCGTTTGCTCC
GTTTCCATATGTGCCGGAAAGCAAGCCCTCTGAGAAGACCGCTGTGTAG
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