Gcaud2501.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2501.t1
Unique NameGcaud2501.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length123
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_6549_length_1148_cov_9.122044contigNODE_6549_length_1148_cov_9.122044:528..966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2501Gcaud2501Gracilaria caudata M_176_S67 malegeneNODE_6549_length_1148_cov_9.122044 528..966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2501.t1Gcaud2501.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_6549_length_1148_cov_9.122044 528..966 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2501.t1.stop1Gcaud2501.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_6549_length_1148_cov_9.122044 528..530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2501.t1.CDS1Gcaud2501.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_6549_length_1148_cov_9.122044 528..685 -
Gcaud2501.t1.CDS2Gcaud2501.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_6549_length_1148_cov_9.122044 756..966 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2501.t1.exon1Gcaud2501.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_6549_length_1148_cov_9.122044 528..685 -
Gcaud2501.t1.exon2Gcaud2501.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_6549_length_1148_cov_9.122044 756..966 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2501.t1.intron1Gcaud2501.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_6549_length_1148_cov_9.122044 686..755 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2501.t1.start1Gcaud2501.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_6549_length_1148_cov_9.122044 964..966 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2501.t1 ID=Gcaud2501.t1|Name=Gcaud2501.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=123bp
MKYGVFVNVGVERDGLIYFSRMPEKHRTDWKEFEKGIEVCVEVTDIIDDQ
IALALVDVADEMLKEALEMISKDQSKAEAQQNEIVAQRSSEEEDLVGKTA
ENEDFEEIEKFSDEYFEDEYDL*
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spliced messenger RNA

>Gcaud2501.t1 ID=Gcaud2501.t1|Name=Gcaud2501.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=369bp|location=Sequence derived from alignment at NODE_6549_length_1148_cov_9.122044:528..966- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATACGGCGTCTTTGTCAACGTTGGGGTTGAGAGGGACGGATTGAT
CTACTTCTCCCGAATGCCTGAAAAGCATAGAACAGATTGGAAAGAGTTCG
AGAAAGGGATTGAGGTATGTGTGGAAGTGACTGACATTATAGATGATCAA
ATAGCCCTTGCCTTGGTTGATGTCGCGGACGAGATGCTGAAAGAAGCTCT
TGAGATGATCAGCAAAGATCAAAGCAAGGCAGAAGCGCAGCAGAATGAGA
TTGTGGCACAGAGGTCTAGTGAAGAAGAAGATCTGGTCGGGAAGACCGCA
GAGAATGAAGACTTCGAGGAGATTGAAAAGTTCTCAGATGAATACTTCGA
GGATGAATACGATCTGTAG
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protein sequence of Gcaud2501.t1

>Gcaud2501.t1 ID=Gcaud2501.t1|Name=Gcaud2501.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=123bp
MKYGVFVNVGVERDGLIYFSRMPEKHRTDWKEFEKGIEVCVEVTDIIDDQ
IALALVDVADEMLKEALEMISKDQSKAEAQQNEIVAQRSSEEEDLVGKTA
ENEDFEEIEKFSDEYFEDEYDL*
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mRNA from alignment at NODE_6549_length_1148_cov_9.122044:528..966-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2501.t1 ID=Gcaud2501.t1|Name=Gcaud2501.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=439bp|location=Sequence derived from alignment at NODE_6549_length_1148_cov_9.122044:528..966- (Gracilaria caudata M_176_S67 male)
ATGAAATACGGCGTCTTTGTCAACGTTGGGGTTGAGAGGGACGGATTGAT
CTACTTCTCCCGAATGCCTGAAAAGCATAGAACAGATTGGAAAGAGTTCG
AGAAAGGGATTGAGGTATGTGTGGAAGTGACTGACATTATAGATGATCAA
ATAGCCCTTGCCTTGGTTGATGTCGCGGACGAGATGCTGAAAGAAGCTCT
TGAGATGATCAGTTCTGTTACAGCTCGCGTTGAAGATGTTCAACGAGCTC
GAGAGGTCATTGCCTTGCTCCGAAATCCGAGGCAAAGATCAAAGCAAGGC
AGAAGCGCAGCAGAATGAGATTGTGGCACAGAGGTCTAGTGAAGAAGAAG
ATCTGGTCGGGAAGACCGCAGAGAATGAAGACTTCGAGGAGATTGAAAAG
TTCTCAGATGAATACTTCGAGGATGAATACGATCTGTAG
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Coding sequence (CDS) from alignment at NODE_6549_length_1148_cov_9.122044:528..966-

>Gcaud2501.t1 ID=Gcaud2501.t1|Name=Gcaud2501.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=369bp|location=Sequence derived from alignment at NODE_6549_length_1148_cov_9.122044:528..966- (Gracilaria caudata M_176_S67 male)
ATGAAATACGGCGTCTTTGTCAACGTTGGGGTTGAGAGGGACGGATTGAT
CTACTTCTCCCGAATGCCTGAAAAGCATAGAACAGATTGGAAAGAGTTCG
AGAAAGGGATTGAGGTATGTGTGGAAGTGACTGACATTATAGATGATCAA
ATAGCCCTTGCCTTGGTTGATGTCGCGGACGAGATGCTGAAAGAAGCTCT
TGAGATGATCAGCAAAGATCAAAGCAAGGCAGAAGCGCAGCAGAATGAGA
TTGTGGCACAGAGGTCTAGTGAAGAAGAAGATCTGGTCGGGAAGACCGCA
GAGAATGAAGACTTCGAGGAGATTGAAAAGTTCTCAGATGAATACTTCGA
GGATGAATACGATCTGTAG
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