Gcaud2498.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2498.t1
Unique NameGcaud2498.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1317_length_11484_cov_3.708769contigNODE_1317_length_11484_cov_3.708769:6475..7506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706964.1
Preferred nameTOMM40L
PFAMsPorin_3
Max annot lvl2759|Eukaryota
KEGG koko:K11518
KEGG TC3.A.8.1
KEGG Pathwayko05014,map05014
GOsGO:0001666,GO:0003674,GO:0005048,GO:0005215,GO:0005216,GO:0005261,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005742,GO:0005743,GO:0005758,GO:0005773,GO:0005774,GO:0005829,GO:0006605,GO:0006626,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008320,GO:0008324,GO:0008565,GO:0009628,GO:0009987,GO:0010941,GO:0010942,GO:0015031,GO:0015075,GO:0015267,GO:0015318,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0019867,GO:0022803,GO:0022804,GO:0022838,GO:0022857,GO:0022884,GO:0022890,GO:0030150,GO:0030943,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031970,GO:0031974,GO:0031975,GO:0032592,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034220,GO:0034613,GO:0036293,GO:0036294,GO:0042221,GO:0042277,GO:0042719,GO:0042886,GO:0042887,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051204,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0070013,GO:0070482,GO:0070585,GO:0070678,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098573,GO:0098588,GO:0098655,GO:0098796,GO:0098798,GO:0098799,GO:0098805,GO:1904680,GO:1990351,GO:1990542
Evalue3.87e-118
EggNOG OGsKOG3296@1|root,KOG3296@2759|Eukaryota
Descriptionprotein import into mitochondrial matrix
COG categoryS
BRITEko00000,ko00001,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2498Gcaud2498Gracilaria caudata M_176_S67 malegeneNODE_1317_length_11484_cov_3.708769 6475..7506 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2498.t1.stop1Gcaud2498.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1317_length_11484_cov_3.708769 6475..6477 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2498.t1.CDS1Gcaud2498.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1317_length_11484_cov_3.708769 6475..7506 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2498.t1.exon1Gcaud2498.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1317_length_11484_cov_3.708769 6475..7506 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2498.t1.start1Gcaud2498.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1317_length_11484_cov_3.708769 7504..7506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2498.t1Gcaud2498.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1317_length_11484_cov_3.708769 6475..7506 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2498.t1 ID=Gcaud2498.t1|Name=Gcaud2498.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=344bp
MGTTYSRAEASPASAVAASAAAQAESTPSKAQPTAPLTPFTSRILSKDKP
QTSTTKKTASGSWWRNFERSELPNPGGYEEISQDAMQILRPNLIEGMQFN
FTAPVTNTFALGNSVEMGAKDHPGMFALNANYFTNRIVMMSRTTPSDGRV
NGRIFINHTPALTSKIIADVGLEPDSSKGSWDLDYRGSDYCGQLKFANGV
VAVSYLQSVAPWLAFGGEGFYQHKSCFSAVTLAAKYFTKDDTASLSFSSF
GPILANYVHRVNPKLSFATEIFVDARTRDSHLTLGYRFDLKSATVIGHMD
STGRVAATLEEKINPALSLTLSGELDHVKEDYKFGFGVNIGGG*
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spliced messenger RNA

>Gcaud2498.t1 ID=Gcaud2498.t1|Name=Gcaud2498.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_1317_length_11484_cov_3.708769:6475..7506- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAACTACGTATTCTCGGGCTGAGGCAAGCCCGGCATCTGCAGTCGC
CGCATCAGCCGCCGCACAAGCAGAATCCACACCATCCAAAGCACAGCCAA
CAGCACCTTTGACACCATTCACGTCCCGGATTCTTTCAAAGGACAAGCCA
CAAACTTCCACAACAAAGAAAACAGCATCTGGATCATGGTGGCGAAATTT
TGAGCGATCGGAGCTTCCAAACCCGGGTGGCTACGAAGAAATCAGTCAGG
ATGCAATGCAAATCTTGCGTCCGAACCTTATTGAAGGAATGCAGTTTAAC
TTCACAGCTCCTGTTACTAACACGTTTGCATTGGGAAATTCCGTGGAAAT
GGGCGCTAAAGATCATCCCGGCATGTTCGCACTTAACGCAAACTATTTTA
CCAACCGCATCGTCATGATGTCTCGCACCACACCTTCTGACGGCAGGGTG
AATGGTCGTATTTTCATCAATCACACCCCCGCTCTGACGAGCAAGATCAT
TGCGGACGTCGGCTTGGAACCAGACTCTTCGAAGGGTTCATGGGATCTTG
ATTATCGTGGAAGCGATTATTGTGGTCAACTGAAATTCGCGAATGGTGTC
GTGGCTGTCTCATACCTTCAATCTGTTGCGCCCTGGCTGGCGTTTGGAGG
GGAAGGGTTTTACCAACATAAGAGCTGTTTCTCAGCAGTGACCTTGGCAG
CCAAGTATTTCACAAAGGACGACACTGCATCTCTTTCATTTTCTTCTTTC
GGACCGATTTTGGCCAACTACGTACATCGCGTTAACCCGAAGCTGTCGTT
CGCGACCGAGATTTTTGTGGATGCACGTACGAGAGATTCTCATTTGACGT
TGGGGTACCGATTCGACCTGAAAAGCGCTACTGTTATTGGGCATATGGAT
TCGACCGGCAGAGTGGCTGCGACGCTTGAGGAGAAGATTAATCCGGCCTT
GTCACTCACTTTGTCGGGTGAGCTTGATCACGTGAAAGAAGATTACAAGT
TTGGATTTGGTGTGAATATTGGGGGTGGATAA
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protein sequence of Gcaud2498.t1

>Gcaud2498.t1 ID=Gcaud2498.t1|Name=Gcaud2498.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=344bp
MGTTYSRAEASPASAVAASAAAQAESTPSKAQPTAPLTPFTSRILSKDKP
QTSTTKKTASGSWWRNFERSELPNPGGYEEISQDAMQILRPNLIEGMQFN
FTAPVTNTFALGNSVEMGAKDHPGMFALNANYFTNRIVMMSRTTPSDGRV
NGRIFINHTPALTSKIIADVGLEPDSSKGSWDLDYRGSDYCGQLKFANGV
VAVSYLQSVAPWLAFGGEGFYQHKSCFSAVTLAAKYFTKDDTASLSFSSF
GPILANYVHRVNPKLSFATEIFVDARTRDSHLTLGYRFDLKSATVIGHMD
STGRVAATLEEKINPALSLTLSGELDHVKEDYKFGFGVNIGGG*
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mRNA from alignment at NODE_1317_length_11484_cov_3.708769:6475..7506-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2498.t1 ID=Gcaud2498.t1|Name=Gcaud2498.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_1317_length_11484_cov_3.708769:6475..7506- (Gracilaria caudata M_176_S67 male)
ATGGGAACTACGTATTCTCGGGCTGAGGCAAGCCCGGCATCTGCAGTCGC
CGCATCAGCCGCCGCACAAGCAGAATCCACACCATCCAAAGCACAGCCAA
CAGCACCTTTGACACCATTCACGTCCCGGATTCTTTCAAAGGACAAGCCA
CAAACTTCCACAACAAAGAAAACAGCATCTGGATCATGGTGGCGAAATTT
TGAGCGATCGGAGCTTCCAAACCCGGGTGGCTACGAAGAAATCAGTCAGG
ATGCAATGCAAATCTTGCGTCCGAACCTTATTGAAGGAATGCAGTTTAAC
TTCACAGCTCCTGTTACTAACACGTTTGCATTGGGAAATTCCGTGGAAAT
GGGCGCTAAAGATCATCCCGGCATGTTCGCACTTAACGCAAACTATTTTA
CCAACCGCATCGTCATGATGTCTCGCACCACACCTTCTGACGGCAGGGTG
AATGGTCGTATTTTCATCAATCACACCCCCGCTCTGACGAGCAAGATCAT
TGCGGACGTCGGCTTGGAACCAGACTCTTCGAAGGGTTCATGGGATCTTG
ATTATCGTGGAAGCGATTATTGTGGTCAACTGAAATTCGCGAATGGTGTC
GTGGCTGTCTCATACCTTCAATCTGTTGCGCCCTGGCTGGCGTTTGGAGG
GGAAGGGTTTTACCAACATAAGAGCTGTTTCTCAGCAGTGACCTTGGCAG
CCAAGTATTTCACAAAGGACGACACTGCATCTCTTTCATTTTCTTCTTTC
GGACCGATTTTGGCCAACTACGTACATCGCGTTAACCCGAAGCTGTCGTT
CGCGACCGAGATTTTTGTGGATGCACGTACGAGAGATTCTCATTTGACGT
TGGGGTACCGATTCGACCTGAAAAGCGCTACTGTTATTGGGCATATGGAT
TCGACCGGCAGAGTGGCTGCGACGCTTGAGGAGAAGATTAATCCGGCCTT
GTCACTCACTTTGTCGGGTGAGCTTGATCACGTGAAAGAAGATTACAAGT
TTGGATTTGGTGTGAATATTGGGGGTGGATAA
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Coding sequence (CDS) from alignment at NODE_1317_length_11484_cov_3.708769:6475..7506-

>Gcaud2498.t1 ID=Gcaud2498.t1|Name=Gcaud2498.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1032bp|location=Sequence derived from alignment at NODE_1317_length_11484_cov_3.708769:6475..7506- (Gracilaria caudata M_176_S67 male)
ATGGGAACTACGTATTCTCGGGCTGAGGCAAGCCCGGCATCTGCAGTCGC
CGCATCAGCCGCCGCACAAGCAGAATCCACACCATCCAAAGCACAGCCAA
CAGCACCTTTGACACCATTCACGTCCCGGATTCTTTCAAAGGACAAGCCA
CAAACTTCCACAACAAAGAAAACAGCATCTGGATCATGGTGGCGAAATTT
TGAGCGATCGGAGCTTCCAAACCCGGGTGGCTACGAAGAAATCAGTCAGG
ATGCAATGCAAATCTTGCGTCCGAACCTTATTGAAGGAATGCAGTTTAAC
TTCACAGCTCCTGTTACTAACACGTTTGCATTGGGAAATTCCGTGGAAAT
GGGCGCTAAAGATCATCCCGGCATGTTCGCACTTAACGCAAACTATTTTA
CCAACCGCATCGTCATGATGTCTCGCACCACACCTTCTGACGGCAGGGTG
AATGGTCGTATTTTCATCAATCACACCCCCGCTCTGACGAGCAAGATCAT
TGCGGACGTCGGCTTGGAACCAGACTCTTCGAAGGGTTCATGGGATCTTG
ATTATCGTGGAAGCGATTATTGTGGTCAACTGAAATTCGCGAATGGTGTC
GTGGCTGTCTCATACCTTCAATCTGTTGCGCCCTGGCTGGCGTTTGGAGG
GGAAGGGTTTTACCAACATAAGAGCTGTTTCTCAGCAGTGACCTTGGCAG
CCAAGTATTTCACAAAGGACGACACTGCATCTCTTTCATTTTCTTCTTTC
GGACCGATTTTGGCCAACTACGTACATCGCGTTAACCCGAAGCTGTCGTT
CGCGACCGAGATTTTTGTGGATGCACGTACGAGAGATTCTCATTTGACGT
TGGGGTACCGATTCGACCTGAAAAGCGCTACTGTTATTGGGCATATGGAT
TCGACCGGCAGAGTGGCTGCGACGCTTGAGGAGAAGATTAATCCGGCCTT
GTCACTCACTTTGTCGGGTGAGCTTGATCACGTGAAAGAAGATTACAAGT
TTGGATTTGGTGTGAATATTGGGGGTGGATAA
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