Gcaud2497.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2497.t1
Unique Name	Gcaud2497.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	271

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1317_length_11484_cov_3.708769	contig	NODE_1317_length_11484_cov_3.708769:2368..3180 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr3351
PFAMs	RrnaAD
Max annot lvl	2836\|Bacillariophyta
Evalue	2.67e-58
EggNOG OGs	COG0030@1\|root,KOG0820@2759\|Eukaryota,2XEN7@2836\|Bacillariophyta
Description	Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family
COG category	A

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2497	Gcaud2497	Gracilaria caudata M_176_S67 male	gene	NODE_1317_length_11484_cov_3.708769 2368..3180 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2497.t1.start1	Gcaud2497.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1317_length_11484_cov_3.708769 2368..2370 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2497.t1.CDS1	Gcaud2497.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1317_length_11484_cov_3.708769 2368..3180 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2497.t1.exon1	Gcaud2497.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1317_length_11484_cov_3.708769 2368..3180 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2497.t1.stop1	Gcaud2497.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1317_length_11484_cov_3.708769 3178..3180 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2497.t1	Gcaud2497.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1317_length_11484_cov_3.708769 2368..3180 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1317_length_11484_cov_3.708769:2368..3180+
coding sequence from alignment at NODE_1317_length_11484_cov_3.708769:2368..3180+

mRNA sequence

>Gcaud2497.t1 ID=Gcaud2497.t1|Name=Gcaud2497.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=271bp
LRDRVIIDRIIAAFQHAVQDAHPTPTVVEVGPGLGALTDRLLPLFADMHA
VEIDARAVQHLRTRHAQLNVHHADVLQLQWHAWSSQLGSPLAVIGNLPYN
IVSQILFSLLEAPEHTISTALVMMQKEVAQRVVAAPNTRAYGILSVVSQL
YAQPQQLFCVPNTAFFPVPSVTSAMVQLHFDAHAHFDRANVRMNRALRVV
LRTAFQQRRKRLRNGLKTLCAGKTLPNGWDLKRPQELHPIEFVRLTQFLY
PDGIEEDRDRTGKPAYTVWR*

spliced messenger RNA

>Gcaud2497.t1 ID=Gcaud2497.t1|Name=Gcaud2497.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=813bp|location=Sequence derived from alignment at NODE_1317_length_11484_cov_3.708769:2368..3180+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCGCGACCGCGTCATCATCGACCGCATCATCGCCGCCTTCCAACACGC
CGTGCAAGACGCCCATCCCACGCCCACCGTCGTCGAGGTGGGCCCCGGTC
TCGGCGCGCTTACCGACCGTTTGTTGCCGCTGTTTGCGGACATGCATGCG
GTGGAGATTGATGCGCGCGCCGTACAACACCTGCGTACGCGCCACGCGCA
GCTCAATGTGCACCACGCCGATGTGTTGCAGCTGCAGTGGCACGCATGGT
CGTCGCAGCTCGGCTCTCCGCTCGCTGTGATTGGAAACCTGCCGTACAAC
ATTGTGTCACAGATTCTGTTCTCTCTGTTGGAGGCGCCGGAGCACACCAT
CAGCACCGCGTTAGTGATGATGCAAAAAGAGGTTGCGCAACGCGTGGTCG
CCGCGCCCAACACCCGCGCATACGGCATTTTATCTGTGGTATCACAGCTT
TACGCACAGCCGCAGCAGCTGTTCTGCGTGCCCAACACCGCGTTTTTCCC
CGTGCCCAGCGTCACCTCCGCCATGGTACAACTGCACTTTGACGCGCACG
CGCACTTTGATCGTGCGAATGTGCGCATGAACAGGGCGTTGCGTGTGGTG
CTGAGAACGGCGTTTCAACAGCGACGAAAGCGGCTGCGAAATGGGCTCAA
GACGTTGTGTGCGGGCAAGACGTTGCCCAATGGATGGGATTTGAAGAGAC
CGCAGGAATTGCATCCGATCGAATTCGTGCGCCTTACGCAGTTTTTGTAT
CCTGATGGCATTGAAGAAGATCGAGATCGAACGGGAAAACCGGCTTATAC
GGTGTGGAGATAA

protein sequence of Gcaud2497.t1

>Gcaud2497.t1 ID=Gcaud2497.t1|Name=Gcaud2497.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=271bp
LRDRVIIDRIIAAFQHAVQDAHPTPTVVEVGPGLGALTDRLLPLFADMHA
VEIDARAVQHLRTRHAQLNVHHADVLQLQWHAWSSQLGSPLAVIGNLPYN
IVSQILFSLLEAPEHTISTALVMMQKEVAQRVVAAPNTRAYGILSVVSQL
YAQPQQLFCVPNTAFFPVPSVTSAMVQLHFDAHAHFDRANVRMNRALRVV
LRTAFQQRRKRLRNGLKTLCAGKTLPNGWDLKRPQELHPIEFVRLTQFLY
PDGIEEDRDRTGKPAYTVWR*

mRNA from alignment at NODE_1317_length_11484_cov_3.708769:2368..3180+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2497.t1 ID=Gcaud2497.t1|Name=Gcaud2497.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=813bp|location=Sequence derived from alignment at NODE_1317_length_11484_cov_3.708769:2368..3180+ (Gracilaria caudata M_176_S67 male)
CTGCGCGACCGCGTCATCATCGACCGCATCATCGCCGCCTTCCAACACGC
CGTGCAAGACGCCCATCCCACGCCCACCGTCGTCGAGGTGGGCCCCGGTC
TCGGCGCGCTTACCGACCGTTTGTTGCCGCTGTTTGCGGACATGCATGCG
GTGGAGATTGATGCGCGCGCCGTACAACACCTGCGTACGCGCCACGCGCA
GCTCAATGTGCACCACGCCGATGTGTTGCAGCTGCAGTGGCACGCATGGT
CGTCGCAGCTCGGCTCTCCGCTCGCTGTGATTGGAAACCTGCCGTACAAC
ATTGTGTCACAGATTCTGTTCTCTCTGTTGGAGGCGCCGGAGCACACCAT
CAGCACCGCGTTAGTGATGATGCAAAAAGAGGTTGCGCAACGCGTGGTCG
CCGCGCCCAACACCCGCGCATACGGCATTTTATCTGTGGTATCACAGCTT
TACGCACAGCCGCAGCAGCTGTTCTGCGTGCCCAACACCGCGTTTTTCCC
CGTGCCCAGCGTCACCTCCGCCATGGTACAACTGCACTTTGACGCGCACG
CGCACTTTGATCGTGCGAATGTGCGCATGAACAGGGCGTTGCGTGTGGTG
CTGAGAACGGCGTTTCAACAGCGACGAAAGCGGCTGCGAAATGGGCTCAA
GACGTTGTGTGCGGGCAAGACGTTGCCCAATGGATGGGATTTGAAGAGAC
CGCAGGAATTGCATCCGATCGAATTCGTGCGCCTTACGCAGTTTTTGTAT
CCTGATGGCATTGAAGAAGATCGAGATCGAACGGGAAAACCGGCTTATAC
GGTGTGGAGATAA

Coding sequence (CDS) from alignment at NODE_1317_length_11484_cov_3.708769:2368..3180+

>Gcaud2497.t1 ID=Gcaud2497.t1|Name=Gcaud2497.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=813bp|location=Sequence derived from alignment at NODE_1317_length_11484_cov_3.708769:2368..3180+ (Gracilaria caudata M_176_S67 male)
CTGCGCGACCGCGTCATCATCGACCGCATCATCGCCGCCTTCCAACACGC
CGTGCAAGACGCCCATCCCACGCCCACCGTCGTCGAGGTGGGCCCCGGTC
TCGGCGCGCTTACCGACCGTTTGTTGCCGCTGTTTGCGGACATGCATGCG
GTGGAGATTGATGCGCGCGCCGTACAACACCTGCGTACGCGCCACGCGCA
GCTCAATGTGCACCACGCCGATGTGTTGCAGCTGCAGTGGCACGCATGGT
CGTCGCAGCTCGGCTCTCCGCTCGCTGTGATTGGAAACCTGCCGTACAAC
ATTGTGTCACAGATTCTGTTCTCTCTGTTGGAGGCGCCGGAGCACACCAT
CAGCACCGCGTTAGTGATGATGCAAAAAGAGGTTGCGCAACGCGTGGTCG
CCGCGCCCAACACCCGCGCATACGGCATTTTATCTGTGGTATCACAGCTT
TACGCACAGCCGCAGCAGCTGTTCTGCGTGCCCAACACCGCGTTTTTCCC
CGTGCCCAGCGTCACCTCCGCCATGGTACAACTGCACTTTGACGCGCACG
CGCACTTTGATCGTGCGAATGTGCGCATGAACAGGGCGTTGCGTGTGGTG
CTGAGAACGGCGTTTCAACAGCGACGAAAGCGGCTGCGAAATGGGCTCAA
GACGTTGTGTGCGGGCAAGACGTTGCCCAATGGATGGGATTTGAAGAGAC
CGCAGGAATTGCATCCGATCGAATTCGTGCGCCTTACGCAGTTTTTGTAT
CCTGATGGCATTGAAGAAGATCGAGATCGAACGGGAAAACCGGCTTATAC
GGTGTGGAGATAA