Gcaud2496.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2496.t1
Unique Name	Gcaud2496.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	231

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1317_length_11484_cov_3.708769	contig	NODE_1317_length_11484_cov_3.708769:1257..1949 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7425.NV11213-PA
Preferred name	MLEC
PFAMs	Malectin
Max annot lvl	33208\|Metazoa
GOs	GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006457,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016192,GO:0019899,GO:0030141,GO:0030246,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0035579,GO:0036230,GO:0042119,GO:0042175,GO:0042581,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099503
Evalue	0.000966
EggNOG OGs	KOG3593@1\|root,KOG3593@2759\|Eukaryota,38DV4@33154\|Opisthokonta,3BBWY@33208\|Metazoa,3CT8I@33213\|Bilateria,41THV@6656\|Arthropoda,3SIY6@50557\|Insecta,46JEN@7399\|Hymenoptera
Description	Di-glucose binding within endoplasmic reticulum
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2496	Gcaud2496	Gracilaria caudata M_176_S67 male	gene	NODE_1317_length_11484_cov_3.708769 1257..1949 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2496.t1.start1	Gcaud2496.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1317_length_11484_cov_3.708769 1257..1259 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2496.t1.CDS1	Gcaud2496.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1317_length_11484_cov_3.708769 1257..1949 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2496.t1.exon1	Gcaud2496.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1317_length_11484_cov_3.708769 1257..1949 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2496.t1.stop1	Gcaud2496.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1317_length_11484_cov_3.708769 1947..1949 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2496.t1	Gcaud2496.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1317_length_11484_cov_3.708769 1257..1949 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1317_length_11484_cov_3.708769:1257..1949+
coding sequence from alignment at NODE_1317_length_11484_cov_3.708769:1257..1949+

mRNA sequence

>Gcaud2496.t1 ID=Gcaud2496.t1|Name=Gcaud2496.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=231bp
MEEMPSAEPTLLVIEQPTLPEETPVEVVEQSLTSADMPEADAEPMPSVEA
AAPPPAAAAAADSTAPVPFFSYNVGGDAFGQVQADPVQHVVGETLIFNMP
DALISDANPALEDAYKSHRYGMLGSVWGYDLPVAQPGYYTCKLHYCETFS
EFFTDEPNRTFEVTLVGDGEPDRVHRAEFDVMVELGGREFTAYDRTFSDI
AVAEMLQLREIPSKGDAFLSGITCLWTAPL*

spliced messenger RNA

>Gcaud2496.t1 ID=Gcaud2496.t1|Name=Gcaud2496.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=693bp|location=Sequence derived from alignment at NODE_1317_length_11484_cov_3.708769:1257..1949+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAGATGCCGTCAGCCGAACCGACGCTTCTGGTGATCGAGCAGCC
CACGCTACCCGAGGAGACGCCCGTCGAGGTGGTCGAGCAGTCGCTCACAT
CCGCCGACATGCCGGAAGCAGACGCAGAGCCCATGCCCTCCGTCGAAGCC
GCTGCGCCACCGCCAGCAGCAGCAGCCGCGGCGGATTCCACAGCACCCGT
GCCGTTCTTCTCGTACAACGTGGGCGGCGACGCGTTCGGACAGGTGCAGG
CGGACCCGGTGCAGCACGTGGTGGGCGAGACGCTTATCTTCAACATGCCG
GACGCGCTGATCAGCGACGCCAATCCCGCGTTGGAAGACGCGTACAAGTC
GCACCGCTACGGCATGCTGGGCTCGGTGTGGGGATACGACCTGCCGGTGG
CGCAGCCGGGATACTACACATGCAAGCTGCACTATTGTGAGACGTTTTCG
GAGTTCTTCACGGACGAACCGAACCGCACGTTCGAGGTGACGCTGGTGGG
CGACGGCGAACCGGATCGCGTGCACCGCGCGGAGTTCGACGTCATGGTGG
AGCTGGGCGGGCGCGAGTTCACGGCTTATGATCGCACGTTCTCTGATATT
GCGGTGGCGGAGATGTTGCAGCTGAGGGAGATTCCGTCCAAGGGCGACGC
CTTCCTGTCGGGCATCACTTGCCTGTGGACGGCGCCGCTCTAG

protein sequence of Gcaud2496.t1

>Gcaud2496.t1 ID=Gcaud2496.t1|Name=Gcaud2496.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=231bp
MEEMPSAEPTLLVIEQPTLPEETPVEVVEQSLTSADMPEADAEPMPSVEA
AAPPPAAAAAADSTAPVPFFSYNVGGDAFGQVQADPVQHVVGETLIFNMP
DALISDANPALEDAYKSHRYGMLGSVWGYDLPVAQPGYYTCKLHYCETFS
EFFTDEPNRTFEVTLVGDGEPDRVHRAEFDVMVELGGREFTAYDRTFSDI
AVAEMLQLREIPSKGDAFLSGITCLWTAPL*

mRNA from alignment at NODE_1317_length_11484_cov_3.708769:1257..1949+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2496.t1 ID=Gcaud2496.t1|Name=Gcaud2496.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=693bp|location=Sequence derived from alignment at NODE_1317_length_11484_cov_3.708769:1257..1949+ (Gracilaria caudata M_176_S67 male)
ATGGAAGAGATGCCGTCAGCCGAACCGACGCTTCTGGTGATCGAGCAGCC
CACGCTACCCGAGGAGACGCCCGTCGAGGTGGTCGAGCAGTCGCTCACAT
CCGCCGACATGCCGGAAGCAGACGCAGAGCCCATGCCCTCCGTCGAAGCC
GCTGCGCCACCGCCAGCAGCAGCAGCCGCGGCGGATTCCACAGCACCCGT
GCCGTTCTTCTCGTACAACGTGGGCGGCGACGCGTTCGGACAGGTGCAGG
CGGACCCGGTGCAGCACGTGGTGGGCGAGACGCTTATCTTCAACATGCCG
GACGCGCTGATCAGCGACGCCAATCCCGCGTTGGAAGACGCGTACAAGTC
GCACCGCTACGGCATGCTGGGCTCGGTGTGGGGATACGACCTGCCGGTGG
CGCAGCCGGGATACTACACATGCAAGCTGCACTATTGTGAGACGTTTTCG
GAGTTCTTCACGGACGAACCGAACCGCACGTTCGAGGTGACGCTGGTGGG
CGACGGCGAACCGGATCGCGTGCACCGCGCGGAGTTCGACGTCATGGTGG
AGCTGGGCGGGCGCGAGTTCACGGCTTATGATCGCACGTTCTCTGATATT
GCGGTGGCGGAGATGTTGCAGCTGAGGGAGATTCCGTCCAAGGGCGACGC
CTTCCTGTCGGGCATCACTTGCCTGTGGACGGCGCCGCTCTAG

Coding sequence (CDS) from alignment at NODE_1317_length_11484_cov_3.708769:1257..1949+

>Gcaud2496.t1 ID=Gcaud2496.t1|Name=Gcaud2496.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=693bp|location=Sequence derived from alignment at NODE_1317_length_11484_cov_3.708769:1257..1949+ (Gracilaria caudata M_176_S67 male)
ATGGAAGAGATGCCGTCAGCCGAACCGACGCTTCTGGTGATCGAGCAGCC
CACGCTACCCGAGGAGACGCCCGTCGAGGTGGTCGAGCAGTCGCTCACAT
CCGCCGACATGCCGGAAGCAGACGCAGAGCCCATGCCCTCCGTCGAAGCC
GCTGCGCCACCGCCAGCAGCAGCAGCCGCGGCGGATTCCACAGCACCCGT
GCCGTTCTTCTCGTACAACGTGGGCGGCGACGCGTTCGGACAGGTGCAGG
CGGACCCGGTGCAGCACGTGGTGGGCGAGACGCTTATCTTCAACATGCCG
GACGCGCTGATCAGCGACGCCAATCCCGCGTTGGAAGACGCGTACAAGTC
GCACCGCTACGGCATGCTGGGCTCGGTGTGGGGATACGACCTGCCGGTGG
CGCAGCCGGGATACTACACATGCAAGCTGCACTATTGTGAGACGTTTTCG
GAGTTCTTCACGGACGAACCGAACCGCACGTTCGAGGTGACGCTGGTGGG
CGACGGCGAACCGGATCGCGTGCACCGCGCGGAGTTCGACGTCATGGTGG
AGCTGGGCGGGCGCGAGTTCACGGCTTATGATCGCACGTTCTCTGATATT
GCGGTGGCGGAGATGTTGCAGCTGAGGGAGATTCCGTCCAAGGGCGACGC
CTTCCTGTCGGGCATCACTTGCCTGTGGACGGCGCCGCTCTAG